Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06875

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06865 and A4249_RS06870 overlap by 47 nucleotidesA4249_RS06870 and A4249_RS16540 are separated by 23 nucleotidesA4249_RS16540 and A4249_RS06875 are separated by 3 nucleotidesA4249_RS06875 and A4249_RS16545 overlap by 4 nucleotidesA4249_RS16545 and A4249_RS06880 are separated by 187 nucleotidesA4249_RS06880 and A4249_RS06885 overlap by 4 nucleotides A4249_RS06865: A4249_RS06865 - hypothetical protein, at 1,397,103 to 1,397,444 _RS06865 A4249_RS06870: A4249_RS06870 - hypothetical protein, at 1,397,398 to 1,397,994 _RS06870 A4249_RS16540: A4249_RS16540 - hypothetical protein, at 1,398,018 to 1,398,158 _RS16540 A4249_RS06875: A4249_RS06875 - hypothetical protein, at 1,398,162 to 1,398,521 _RS06875 A4249_RS16545: A4249_RS16545 - hypothetical protein, at 1,398,518 to 1,398,676 _RS16545 A4249_RS06880: A4249_RS06880 - hypothetical protein, at 1,398,864 to 1,399,205 _RS06880 A4249_RS06885: A4249_RS06885 - hypothetical protein, at 1,399,202 to 1,399,717 _RS06885 Position (kb) 1398 1399Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1397.214 kb on + strand, within A4249_RS06865at 1397.214 kb on + strand, within A4249_RS06865at 1397.214 kb on + strand, within A4249_RS06865at 1397.214 kb on + strand, within A4249_RS06865at 1397.214 kb on + strand, within A4249_RS06865at 1397.215 kb on - strand, within A4249_RS06865at 1397.215 kb on - strand, within A4249_RS06865at 1397.215 kb on - strand, within A4249_RS06865at 1397.358 kb on + strand, within A4249_RS06865at 1397.359 kb on - strand, within A4249_RS06865at 1397.671 kb on + strand, within A4249_RS06870at 1397.672 kb on - strand, within A4249_RS06870at 1397.788 kb on + strand, within A4249_RS06870at 1397.788 kb on + strand, within A4249_RS06870at 1397.789 kb on - strand, within A4249_RS06870at 1397.789 kb on - strand, within A4249_RS06870at 1397.789 kb on - strand, within A4249_RS06870at 1397.789 kb on - strand, within A4249_RS06870at 1397.851 kb on + strand, within A4249_RS06870at 1397.852 kb on - strand, within A4249_RS06870at 1397.852 kb on - strand, within A4249_RS06870at 1397.852 kb on - strand, within A4249_RS06870at 1397.930 kb on + strand, within A4249_RS06870at 1397.962 kb on + strandat 1397.962 kb on + strandat 1397.963 kb on - strandat 1397.963 kb on - strandat 1397.992 kb on + strandat 1397.992 kb on + strandat 1397.993 kb on - strandat 1398.109 kb on + strand, within A4249_RS16540at 1398.109 kb on + strand, within A4249_RS16540at 1398.109 kb on + strand, within A4249_RS16540at 1398.109 kb on + strand, within A4249_RS16540at 1398.109 kb on + strand, within A4249_RS16540at 1398.109 kb on + strand, within A4249_RS16540at 1398.110 kb on - strand, within A4249_RS16540at 1398.110 kb on - strand, within A4249_RS16540at 1398.110 kb on - strand, within A4249_RS16540at 1398.110 kb on - strand, within A4249_RS16540at 1398.110 kb on - strand, within A4249_RS16540at 1398.110 kb on - strand, within A4249_RS16540at 1398.110 kb on - strand, within A4249_RS16540at 1398.193 kb on + strandat 1398.193 kb on + strandat 1398.193 kb on + strandat 1398.193 kb on + strandat 1398.193 kb on + strandat 1398.193 kb on + strandat 1398.193 kb on + strandat 1398.193 kb on + strandat 1398.194 kb on - strandat 1398.194 kb on - strandat 1398.194 kb on - strandat 1398.194 kb on - strandat 1398.194 kb on - strandat 1398.410 kb on + strand, within A4249_RS06875at 1398.410 kb on + strand, within A4249_RS06875at 1398.410 kb on + strand, within A4249_RS06875at 1398.410 kb on + strand, within A4249_RS06875at 1398.410 kb on + strand, within A4249_RS06875at 1398.411 kb on - strand, within A4249_RS06875at 1398.411 kb on - strand, within A4249_RS06875at 1398.411 kb on - strand, within A4249_RS06875at 1398.411 kb on - strand, within A4249_RS06875at 1398.411 kb on - strand, within A4249_RS06875at 1398.411 kb on - strand, within A4249_RS06875at 1398.411 kb on - strand, within A4249_RS06875at 1398.411 kb on - strand, within A4249_RS06875at 1398.411 kb on - strand, within A4249_RS06875at 1398.411 kb on - strand, within A4249_RS06875at 1398.519 kb on + strandat 1398.520 kb on - strandat 1398.520 kb on - strandat 1398.644 kb on + strand, within A4249_RS16545at 1398.644 kb on + strand, within A4249_RS16545at 1398.644 kb on + strand, within A4249_RS16545at 1398.645 kb on - strand, within A4249_RS16545at 1398.645 kb on - strand, within A4249_RS16545at 1398.645 kb on - strand, within A4249_RS16545at 1398.645 kb on - strand, within A4249_RS16545at 1398.851 kb on - strandat 1398.851 kb on - strandat 1398.946 kb on - strand, within A4249_RS06880at 1398.946 kb on - strand, within A4249_RS06880at 1399.153 kb on + strand, within A4249_RS06880at 1399.295 kb on + strand, within A4249_RS06885at 1399.295 kb on + strand, within A4249_RS06885at 1399.295 kb on + strand, within A4249_RS06885at 1399.295 kb on + strand, within A4249_RS06885at 1399.295 kb on + strand, within A4249_RS06885at 1399.296 kb on - strand, within A4249_RS06885at 1399.296 kb on - strand, within A4249_RS06885at 1399.296 kb on - strand, within A4249_RS06885at 1399.296 kb on - strand, within A4249_RS06885at 1399.296 kb on - strand, within A4249_RS06885at 1399.326 kb on + strand, within A4249_RS06885at 1399.327 kb on - strand, within A4249_RS06885at 1399.327 kb on - strand, within A4249_RS06885at 1399.327 kb on - strand, within A4249_RS06885at 1399.414 kb on + strand, within A4249_RS06885at 1399.414 kb on + strand, within A4249_RS06885at 1399.414 kb on + strand, within A4249_RS06885at 1399.414 kb on + strand, within A4249_RS06885at 1399.414 kb on + strand, within A4249_RS06885at 1399.414 kb on + strand, within A4249_RS06885at 1399.414 kb on + strand, within A4249_RS06885at 1399.414 kb on + strand, within A4249_RS06885at 1399.414 kb on + strand, within A4249_RS06885at 1399.414 kb on + strand, within A4249_RS06885at 1399.414 kb on + strand, within A4249_RS06885at 1399.414 kb on + strand, within A4249_RS06885at 1399.414 kb on + strand, within A4249_RS06885at 1399.414 kb on + strand, within A4249_RS06885at 1399.414 kb on + strand, within A4249_RS06885at 1399.414 kb on + strand, within A4249_RS06885at 1399.415 kb on - strand, within A4249_RS06885at 1399.415 kb on - strand, within A4249_RS06885at 1399.415 kb on - strand, within A4249_RS06885at 1399.415 kb on - strand, within A4249_RS06885at 1399.415 kb on - strand, within A4249_RS06885at 1399.415 kb on - strand, within A4249_RS06885at 1399.415 kb on - strand, within A4249_RS06885at 1399.415 kb on - strand, within A4249_RS06885at 1399.415 kb on - strand, within A4249_RS06885at 1399.415 kb on - strand, within A4249_RS06885at 1399.415 kb on - strand, within A4249_RS06885at 1399.415 kb on - strand, within A4249_RS06885at 1399.415 kb on - strand, within A4249_RS06885at 1399.415 kb on - strand, within A4249_RS06885at 1399.415 kb on - strand, within A4249_RS06885at 1399.415 kb on - strand, within A4249_RS06885at 1399.415 kb on - strand, within A4249_RS06885at 1399.415 kb on - strand, within A4249_RS06885at 1399.415 kb on - strand, within A4249_RS06885at 1399.415 kb on - strand, within A4249_RS06885at 1399.415 kb on - strand, within A4249_RS06885at 1399.415 kb on - strand, within A4249_RS06885at 1399.415 kb on - strand, within A4249_RS06885

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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1,397,214 + A4249_RS06865 0.32 +0.7
1,397,214 + A4249_RS06865 0.32 +0.5
1,397,214 + A4249_RS06865 0.32 +1.0
1,397,214 + A4249_RS06865 0.32 +0.0
1,397,214 + A4249_RS06865 0.32 +0.3
1,397,215 - A4249_RS06865 0.33 +0.3
1,397,215 - A4249_RS06865 0.33 +0.8
1,397,215 - A4249_RS06865 0.33 -1.0
1,397,358 + A4249_RS06865 0.75 +0.7
1,397,359 - A4249_RS06865 0.75 -0.7
1,397,671 + A4249_RS06870 0.46 -0.1
1,397,672 - A4249_RS06870 0.46 -0.1
1,397,788 + A4249_RS06870 0.65 +0.2
1,397,788 + A4249_RS06870 0.65 -0.2
1,397,789 - A4249_RS06870 0.65 +0.3
1,397,789 - A4249_RS06870 0.65 +0.2
1,397,789 - A4249_RS06870 0.65 +0.1
1,397,789 - A4249_RS06870 0.65 +0.4
1,397,851 + A4249_RS06870 0.76 -0.5
1,397,852 - A4249_RS06870 0.76 +0.6
1,397,852 - A4249_RS06870 0.76 -1.6
1,397,852 - A4249_RS06870 0.76 -0.7
1,397,930 + A4249_RS06870 0.89 +0.8
1,397,962 + -0.1
1,397,962 + -0.5
1,397,963 - +0.4
1,397,963 - +0.0
1,397,992 + -0.2
1,397,992 + -0.3
1,397,993 - -1.3
1,398,109 + A4249_RS16540 0.65 -0.2
1,398,109 + A4249_RS16540 0.65 -0.5
1,398,109 + A4249_RS16540 0.65 -2.2
1,398,109 + A4249_RS16540 0.65 +1.3
1,398,109 + A4249_RS16540 0.65 +0.7
1,398,109 + A4249_RS16540 0.65 +0.6
1,398,110 - A4249_RS16540 0.65 +2.8
1,398,110 - A4249_RS16540 0.65 +0.3
1,398,110 - A4249_RS16540 0.65 +0.0
1,398,110 - A4249_RS16540 0.65 +0.6
1,398,110 - A4249_RS16540 0.65 +0.2
1,398,110 - A4249_RS16540 0.65 +1.3
1,398,110 - A4249_RS16540 0.65 +0.3
1,398,193 + -0.2
1,398,193 + -0.3
1,398,193 + -0.0
1,398,193 + +0.1
1,398,193 + +0.1
1,398,193 + +0.0
1,398,193 + +0.7
1,398,193 + +1.3
1,398,194 - -0.3
1,398,194 - +0.5
1,398,194 - +0.1
1,398,194 - +1.0
1,398,194 - +0.2
1,398,410 + A4249_RS06875 0.69 -0.2
1,398,410 + A4249_RS06875 0.69 -0.6
1,398,410 + A4249_RS06875 0.69 -0.3
1,398,410 + A4249_RS06875 0.69 -0.4
1,398,410 + A4249_RS06875 0.69 -0.5
1,398,411 - A4249_RS06875 0.69 -0.1
1,398,411 - A4249_RS06875 0.69 -0.2
1,398,411 - A4249_RS06875 0.69 +0.1
1,398,411 - A4249_RS06875 0.69 -1.0
1,398,411 - A4249_RS06875 0.69 -0.9
1,398,411 - A4249_RS06875 0.69 -0.2
1,398,411 - A4249_RS06875 0.69 +0.1
1,398,411 - A4249_RS06875 0.69 +0.4
1,398,411 - A4249_RS06875 0.69 -0.3
1,398,411 - A4249_RS06875 0.69 +0.0
1,398,519 + +0.2
1,398,520 - -0.6
1,398,520 - +0.6
1,398,644 + A4249_RS16545 0.79 +0.5
1,398,644 + A4249_RS16545 0.79 +0.8
1,398,644 + A4249_RS16545 0.79 -0.0
1,398,645 - A4249_RS16545 0.80 -0.1
1,398,645 - A4249_RS16545 0.80 -0.2
1,398,645 - A4249_RS16545 0.80 -1.0
1,398,645 - A4249_RS16545 0.80 -0.8
1,398,851 - +0.3
1,398,851 - -0.2
1,398,946 - A4249_RS06880 0.24 +0.2
1,398,946 - A4249_RS06880 0.24 -0.1
1,399,153 + A4249_RS06880 0.85 -0.1
1,399,295 + A4249_RS06885 0.18 -0.1
1,399,295 + A4249_RS06885 0.18 +0.3
1,399,295 + A4249_RS06885 0.18 -1.2
1,399,295 + A4249_RS06885 0.18 -0.2
1,399,295 + A4249_RS06885 0.18 -0.6
1,399,296 - A4249_RS06885 0.18 -0.1
1,399,296 - A4249_RS06885 0.18 +0.7
1,399,296 - A4249_RS06885 0.18 +0.1
1,399,296 - A4249_RS06885 0.18 -0.4
1,399,296 - A4249_RS06885 0.18 +0.1
1,399,326 + A4249_RS06885 0.24 +0.7
1,399,327 - A4249_RS06885 0.24 +0.1
1,399,327 - A4249_RS06885 0.24 -0.2
1,399,327 - A4249_RS06885 0.24 -0.1
1,399,414 + A4249_RS06885 0.41 -1.0
1,399,414 + A4249_RS06885 0.41 +0.6
1,399,414 + A4249_RS06885 0.41 +0.3
1,399,414 + A4249_RS06885 0.41 -0.1
1,399,414 + A4249_RS06885 0.41 -0.3
1,399,414 + A4249_RS06885 0.41 -1.2
1,399,414 + A4249_RS06885 0.41 -0.0
1,399,414 + A4249_RS06885 0.41 +0.8
1,399,414 + A4249_RS06885 0.41 +0.1
1,399,414 + A4249_RS06885 0.41 +0.2
1,399,414 + A4249_RS06885 0.41 +0.5
1,399,414 + A4249_RS06885 0.41 -0.9
1,399,414 + A4249_RS06885 0.41 +0.4
1,399,414 + A4249_RS06885 0.41 -0.3
1,399,414 + A4249_RS06885 0.41 -0.3
1,399,414 + A4249_RS06885 0.41 -1.3
1,399,415 - A4249_RS06885 0.41 -0.8
1,399,415 - A4249_RS06885 0.41 +0.8
1,399,415 - A4249_RS06885 0.41 +0.2
1,399,415 - A4249_RS06885 0.41 +0.6
1,399,415 - A4249_RS06885 0.41 -0.3
1,399,415 - A4249_RS06885 0.41 +0.4
1,399,415 - A4249_RS06885 0.41 -0.6
1,399,415 - A4249_RS06885 0.41 -0.1
1,399,415 - A4249_RS06885 0.41 -0.2
1,399,415 - A4249_RS06885 0.41 +0.1
1,399,415 - A4249_RS06885 0.41 -1.0
1,399,415 - A4249_RS06885 0.41 +0.2
1,399,415 - A4249_RS06885 0.41 +1.4
1,399,415 - A4249_RS06885 0.41 -0.3
1,399,415 - A4249_RS06885 0.41 -0.7
1,399,415 - A4249_RS06885 0.41 +0.5
1,399,415 - A4249_RS06885 0.41 -1.3
1,399,415 - A4249_RS06885 0.41 -0.3
1,399,415 - A4249_RS06885 0.41 -0.2
1,399,415 - A4249_RS06885 0.41 -0.1
1,399,415 - A4249_RS06885 0.41 -0.7
1,399,415 - A4249_RS06885 0.41 -0.2
1,399,415 - A4249_RS06885 0.41 +0.2

Or see this region's nucleotide sequence