Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS06125

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS06115 and A4249_RS06120 overlap by 4 nucleotidesA4249_RS06120 and A4249_RS06125 are separated by 39 nucleotidesA4249_RS06125 and A4249_RS06130 are separated by 57 nucleotides A4249_RS06115: A4249_RS06115 - S9 family peptidase, at 1,243,043 to 1,245,262 _RS06115 A4249_RS06120: A4249_RS06120 - GNAT family N-acetyltransferase, at 1,245,259 to 1,245,825 _RS06120 A4249_RS06125: A4249_RS06125 - hypothetical protein, at 1,245,865 to 1,246,203 _RS06125 A4249_RS06130: A4249_RS06130 - hypothetical protein, at 1,246,261 to 1,247,613 _RS06130 Position (kb) 1245 1246 1247Strain fitness (log2 ratio) -1 0 1at 1244.909 kb on - strand, within A4249_RS06115at 1244.975 kb on + strand, within A4249_RS06115at 1244.981 kb on + strand, within A4249_RS06115at 1244.981 kb on + strand, within A4249_RS06115at 1244.981 kb on + strand, within A4249_RS06115at 1244.981 kb on + strand, within A4249_RS06115at 1244.981 kb on + strand, within A4249_RS06115at 1244.981 kb on + strand, within A4249_RS06115at 1244.981 kb on + strand, within A4249_RS06115at 1244.981 kb on + strand, within A4249_RS06115at 1244.981 kb on + strand, within A4249_RS06115at 1244.981 kb on + strand, within A4249_RS06115at 1244.981 kb on + strand, within A4249_RS06115at 1244.981 kb on + strand, within A4249_RS06115at 1244.981 kb on + strand, within A4249_RS06115at 1244.982 kb on - strand, within A4249_RS06115at 1244.982 kb on - strand, within A4249_RS06115at 1244.982 kb on - strand, within A4249_RS06115at 1244.982 kb on - strand, within A4249_RS06115at 1244.982 kb on - strand, within A4249_RS06115at 1244.982 kb on - strand, within A4249_RS06115at 1244.982 kb on - strand, within A4249_RS06115at 1244.993 kb on + strand, within A4249_RS06115at 1244.993 kb on + strand, within A4249_RS06115at 1244.993 kb on + strand, within A4249_RS06115at 1244.994 kb on - strand, within A4249_RS06115at 1244.994 kb on - strand, within A4249_RS06115at 1244.994 kb on - strand, within A4249_RS06115at 1245.003 kb on - strand, within A4249_RS06115at 1245.074 kb on + strandat 1245.075 kb on - strandat 1245.075 kb on - strandat 1245.191 kb on + strandat 1245.216 kb on - strandat 1245.216 kb on - strandat 1245.242 kb on - strandat 1245.319 kb on + strand, within A4249_RS06120at 1245.319 kb on + strand, within A4249_RS06120at 1245.319 kb on + strand, within A4249_RS06120at 1245.320 kb on - strand, within A4249_RS06120at 1245.320 kb on - strand, within A4249_RS06120at 1245.320 kb on - strand, within A4249_RS06120at 1245.467 kb on - strand, within A4249_RS06120at 1245.496 kb on + strand, within A4249_RS06120at 1245.497 kb on - strand, within A4249_RS06120at 1245.502 kb on + strand, within A4249_RS06120at 1245.502 kb on + strand, within A4249_RS06120at 1245.502 kb on + strand, within A4249_RS06120at 1245.502 kb on + strand, within A4249_RS06120at 1245.502 kb on + strand, within A4249_RS06120at 1245.502 kb on + strand, within A4249_RS06120at 1245.502 kb on + strand, within A4249_RS06120at 1245.502 kb on + strand, within A4249_RS06120at 1245.502 kb on + strand, within A4249_RS06120at 1245.502 kb on + strand, within A4249_RS06120at 1245.503 kb on - strand, within A4249_RS06120at 1245.503 kb on - strand, within A4249_RS06120at 1245.503 kb on - strand, within A4249_RS06120at 1245.503 kb on - strand, within A4249_RS06120at 1245.503 kb on - strand, within A4249_RS06120at 1245.503 kb on - strand, within A4249_RS06120at 1245.503 kb on - strand, within A4249_RS06120at 1245.503 kb on - strand, within A4249_RS06120at 1245.503 kb on - strand, within A4249_RS06120at 1245.503 kb on - strand, within A4249_RS06120at 1245.523 kb on + strand, within A4249_RS06120at 1245.523 kb on + strand, within A4249_RS06120at 1245.659 kb on + strand, within A4249_RS06120at 1245.660 kb on - strand, within A4249_RS06120at 1245.853 kb on + strandat 1245.854 kb on - strandat 1246.020 kb on + strand, within A4249_RS06125at 1246.021 kb on - strand, within A4249_RS06125at 1246.021 kb on - strand, within A4249_RS06125at 1246.041 kb on + strand, within A4249_RS06125at 1246.041 kb on + strand, within A4249_RS06125at 1246.041 kb on + strand, within A4249_RS06125at 1246.042 kb on - strand, within A4249_RS06125at 1246.042 kb on - strand, within A4249_RS06125at 1246.042 kb on - strand, within A4249_RS06125at 1246.042 kb on - strand, within A4249_RS06125at 1246.042 kb on - strand, within A4249_RS06125at 1246.458 kb on + strand, within A4249_RS06130at 1246.588 kb on + strand, within A4249_RS06130at 1246.588 kb on + strand, within A4249_RS06130at 1246.588 kb on + strand, within A4249_RS06130at 1246.588 kb on + strand, within A4249_RS06130at 1246.588 kb on + strand, within A4249_RS06130at 1246.589 kb on - strand, within A4249_RS06130at 1246.589 kb on - strand, within A4249_RS06130at 1246.589 kb on - strand, within A4249_RS06130at 1246.589 kb on - strand, within A4249_RS06130at 1246.589 kb on - strand, within A4249_RS06130at 1246.691 kb on + strand, within A4249_RS06130at 1246.691 kb on + strand, within A4249_RS06130at 1246.692 kb on - strand, within A4249_RS06130at 1246.834 kb on + strand, within A4249_RS06130at 1246.867 kb on + strand, within A4249_RS06130at 1246.867 kb on + strand, within A4249_RS06130at 1246.867 kb on + strand, within A4249_RS06130at 1246.867 kb on + strand, within A4249_RS06130at 1246.867 kb on + strand, within A4249_RS06130at 1246.867 kb on + strand, within A4249_RS06130at 1246.868 kb on - strand, within A4249_RS06130at 1246.868 kb on - strand, within A4249_RS06130at 1246.868 kb on - strand, within A4249_RS06130at 1246.868 kb on - strand, within A4249_RS06130at 1246.868 kb on - strand, within A4249_RS06130at 1246.873 kb on + strand, within A4249_RS06130at 1246.873 kb on + strand, within A4249_RS06130at 1246.873 kb on + strand, within A4249_RS06130at 1246.873 kb on + strand, within A4249_RS06130at 1246.874 kb on - strand, within A4249_RS06130at 1246.874 kb on - strand, within A4249_RS06130at 1246.874 kb on - strand, within A4249_RS06130at 1246.874 kb on - strand, within A4249_RS06130at 1246.874 kb on - strand, within A4249_RS06130at 1246.874 kb on - strand, within A4249_RS06130at 1246.874 kb on - strand, within A4249_RS06130at 1246.874 kb on - strand, within A4249_RS06130at 1246.874 kb on - strand, within A4249_RS06130at 1246.876 kb on - strand, within A4249_RS06130at 1246.876 kb on - strand, within A4249_RS06130at 1246.986 kb on + strand, within A4249_RS06130at 1246.987 kb on - strand, within A4249_RS06130at 1247.154 kb on - strand, within A4249_RS06130at 1247.154 kb on - strand, within A4249_RS06130at 1247.154 kb on - strand, within A4249_RS06130at 1247.164 kb on + strand, within A4249_RS06130at 1247.165 kb on - strand, within A4249_RS06130at 1247.165 kb on - strand, within A4249_RS06130

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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1,244,909 - A4249_RS06115 0.84 -0.6
1,244,975 + A4249_RS06115 0.87 +0.2
1,244,981 + A4249_RS06115 0.87 -0.4
1,244,981 + A4249_RS06115 0.87 -0.6
1,244,981 + A4249_RS06115 0.87 -0.4
1,244,981 + A4249_RS06115 0.87 -0.4
1,244,981 + A4249_RS06115 0.87 +0.9
1,244,981 + A4249_RS06115 0.87 +0.2
1,244,981 + A4249_RS06115 0.87 +0.1
1,244,981 + A4249_RS06115 0.87 -0.3
1,244,981 + A4249_RS06115 0.87 -0.7
1,244,981 + A4249_RS06115 0.87 +1.1
1,244,981 + A4249_RS06115 0.87 -0.2
1,244,981 + A4249_RS06115 0.87 +0.1
1,244,981 + A4249_RS06115 0.87 -0.2
1,244,982 - A4249_RS06115 0.87 -0.6
1,244,982 - A4249_RS06115 0.87 +0.1
1,244,982 - A4249_RS06115 0.87 -0.2
1,244,982 - A4249_RS06115 0.87 -1.1
1,244,982 - A4249_RS06115 0.87 +0.0
1,244,982 - A4249_RS06115 0.87 -0.8
1,244,982 - A4249_RS06115 0.87 +0.6
1,244,993 + A4249_RS06115 0.88 -0.2
1,244,993 + A4249_RS06115 0.88 -0.2
1,244,993 + A4249_RS06115 0.88 +0.3
1,244,994 - A4249_RS06115 0.88 -0.2
1,244,994 - A4249_RS06115 0.88 +0.2
1,244,994 - A4249_RS06115 0.88 -0.3
1,245,003 - A4249_RS06115 0.88 +0.4
1,245,074 + +0.1
1,245,075 - -0.5
1,245,075 - +0.4
1,245,191 + -0.2
1,245,216 - +0.8
1,245,216 - -0.9
1,245,242 - -0.0
1,245,319 + A4249_RS06120 0.11 -0.9
1,245,319 + A4249_RS06120 0.11 -0.3
1,245,319 + A4249_RS06120 0.11 +0.3
1,245,320 - A4249_RS06120 0.11 -0.1
1,245,320 - A4249_RS06120 0.11 -0.5
1,245,320 - A4249_RS06120 0.11 +0.3
1,245,467 - A4249_RS06120 0.37 +0.4
1,245,496 + A4249_RS06120 0.42 -0.4
1,245,497 - A4249_RS06120 0.42 +0.1
1,245,502 + A4249_RS06120 0.43 -0.9
1,245,502 + A4249_RS06120 0.43 +1.0
1,245,502 + A4249_RS06120 0.43 -0.4
1,245,502 + A4249_RS06120 0.43 -0.0
1,245,502 + A4249_RS06120 0.43 +0.2
1,245,502 + A4249_RS06120 0.43 +0.5
1,245,502 + A4249_RS06120 0.43 -0.7
1,245,502 + A4249_RS06120 0.43 +0.1
1,245,502 + A4249_RS06120 0.43 -0.7
1,245,502 + A4249_RS06120 0.43 +1.6
1,245,503 - A4249_RS06120 0.43 -0.1
1,245,503 - A4249_RS06120 0.43 -1.7
1,245,503 - A4249_RS06120 0.43 +1.2
1,245,503 - A4249_RS06120 0.43 +1.1
1,245,503 - A4249_RS06120 0.43 -0.2
1,245,503 - A4249_RS06120 0.43 +1.0
1,245,503 - A4249_RS06120 0.43 -0.5
1,245,503 - A4249_RS06120 0.43 +0.9
1,245,503 - A4249_RS06120 0.43 -1.3
1,245,503 - A4249_RS06120 0.43 +0.0
1,245,523 + A4249_RS06120 0.47 +0.9
1,245,523 + A4249_RS06120 0.47 -0.7
1,245,659 + A4249_RS06120 0.71 -0.1
1,245,660 - A4249_RS06120 0.71 +0.9
1,245,853 + +0.5
1,245,854 - +0.1
1,246,020 + A4249_RS06125 0.46 +0.9
1,246,021 - A4249_RS06125 0.46 +0.2
1,246,021 - A4249_RS06125 0.46 -0.5
1,246,041 + A4249_RS06125 0.52 -0.1
1,246,041 + A4249_RS06125 0.52 -0.1
1,246,041 + A4249_RS06125 0.52 -0.3
1,246,042 - A4249_RS06125 0.52 -0.1
1,246,042 - A4249_RS06125 0.52 +0.3
1,246,042 - A4249_RS06125 0.52 -0.2
1,246,042 - A4249_RS06125 0.52 +0.3
1,246,042 - A4249_RS06125 0.52 -1.3
1,246,458 + A4249_RS06130 0.15 -0.1
1,246,588 + A4249_RS06130 0.24 -0.7
1,246,588 + A4249_RS06130 0.24 +1.0
1,246,588 + A4249_RS06130 0.24 -0.4
1,246,588 + A4249_RS06130 0.24 -0.1
1,246,588 + A4249_RS06130 0.24 -0.8
1,246,589 - A4249_RS06130 0.24 +0.3
1,246,589 - A4249_RS06130 0.24 -0.3
1,246,589 - A4249_RS06130 0.24 +0.5
1,246,589 - A4249_RS06130 0.24 -0.7
1,246,589 - A4249_RS06130 0.24 -0.3
1,246,691 + A4249_RS06130 0.32 +0.2
1,246,691 + A4249_RS06130 0.32 +0.1
1,246,692 - A4249_RS06130 0.32 +0.4
1,246,834 + A4249_RS06130 0.42 -0.1
1,246,867 + A4249_RS06130 0.45 +0.6
1,246,867 + A4249_RS06130 0.45 -0.1
1,246,867 + A4249_RS06130 0.45 +0.5
1,246,867 + A4249_RS06130 0.45 -1.1
1,246,867 + A4249_RS06130 0.45 +0.2
1,246,867 + A4249_RS06130 0.45 +0.4
1,246,868 - A4249_RS06130 0.45 +0.2
1,246,868 - A4249_RS06130 0.45 -0.4
1,246,868 - A4249_RS06130 0.45 -1.4
1,246,868 - A4249_RS06130 0.45 +0.4
1,246,868 - A4249_RS06130 0.45 +0.2
1,246,873 + A4249_RS06130 0.45 +0.0
1,246,873 + A4249_RS06130 0.45 +0.2
1,246,873 + A4249_RS06130 0.45 +0.0
1,246,873 + A4249_RS06130 0.45 -0.8
1,246,874 - A4249_RS06130 0.45 +0.2
1,246,874 - A4249_RS06130 0.45 -0.1
1,246,874 - A4249_RS06130 0.45 +1.2
1,246,874 - A4249_RS06130 0.45 +0.6
1,246,874 - A4249_RS06130 0.45 -0.3
1,246,874 - A4249_RS06130 0.45 -0.4
1,246,874 - A4249_RS06130 0.45 -1.1
1,246,874 - A4249_RS06130 0.45 -0.1
1,246,874 - A4249_RS06130 0.45 -0.8
1,246,876 - A4249_RS06130 0.45 -0.5
1,246,876 - A4249_RS06130 0.45 +0.1
1,246,986 + A4249_RS06130 0.54 +0.1
1,246,987 - A4249_RS06130 0.54 -0.4
1,247,154 - A4249_RS06130 0.66 +0.2
1,247,154 - A4249_RS06130 0.66 +0.1
1,247,154 - A4249_RS06130 0.66 +0.1
1,247,164 + A4249_RS06130 0.67 +1.5
1,247,165 - A4249_RS06130 0.67 +0.1
1,247,165 - A4249_RS06130 0.67 -1.4

Or see this region's nucleotide sequence