Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS04440

Experiment: Thymine 0.793 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS04435 and A4249_RS04440 are separated by 92 nucleotidesA4249_RS04440 and A4249_RS04445 are separated by 210 nucleotides A4249_RS04435: A4249_RS04435 - hypothetical protein, at 921,376 to 922,728 _RS04435 A4249_RS04440: A4249_RS04440 - MFS transporter, at 922,821 to 924,173 _RS04440 A4249_RS04445: A4249_RS04445 - ubiquinol oxidase subunit II, at 924,384 to 925,613 _RS04445 Position (kb) 922 923 924 925Strain fitness (log2 ratio) -2 -1 0 1at 921.878 kb on - strand, within A4249_RS04435at 921.958 kb on + strand, within A4249_RS04435at 921.958 kb on + strand, within A4249_RS04435at 921.958 kb on + strand, within A4249_RS04435at 921.959 kb on - strand, within A4249_RS04435at 921.959 kb on - strand, within A4249_RS04435at 921.959 kb on - strand, within A4249_RS04435at 921.988 kb on + strand, within A4249_RS04435at 921.988 kb on + strand, within A4249_RS04435at 921.989 kb on - strand, within A4249_RS04435at 921.997 kb on + strand, within A4249_RS04435at 921.997 kb on + strand, within A4249_RS04435at 921.998 kb on - strand, within A4249_RS04435at 921.998 kb on - strand, within A4249_RS04435at 921.998 kb on - strand, within A4249_RS04435at 922.058 kb on + strand, within A4249_RS04435at 922.070 kb on + strand, within A4249_RS04435at 922.167 kb on + strand, within A4249_RS04435at 922.168 kb on - strand, within A4249_RS04435at 922.168 kb on - strand, within A4249_RS04435at 922.214 kb on + strand, within A4249_RS04435at 922.214 kb on + strand, within A4249_RS04435at 922.214 kb on + strand, within A4249_RS04435at 922.214 kb on + strand, within A4249_RS04435at 922.215 kb on - strand, within A4249_RS04435at 922.215 kb on - strand, within A4249_RS04435at 922.290 kb on + strand, within A4249_RS04435at 922.290 kb on + strand, within A4249_RS04435at 922.290 kb on + strand, within A4249_RS04435at 922.291 kb on - strand, within A4249_RS04435at 922.291 kb on - strand, within A4249_RS04435at 922.291 kb on - strand, within A4249_RS04435at 922.291 kb on - strand, within A4249_RS04435at 922.297 kb on + strand, within A4249_RS04435at 922.298 kb on - strand, within A4249_RS04435at 922.298 kb on - strand, within A4249_RS04435at 922.382 kb on - strand, within A4249_RS04435at 922.382 kb on - strand, within A4249_RS04435at 922.475 kb on - strand, within A4249_RS04435at 922.475 kb on - strand, within A4249_RS04435at 922.475 kb on - strand, within A4249_RS04435at 922.511 kb on + strand, within A4249_RS04435at 922.511 kb on + strand, within A4249_RS04435at 922.511 kb on + strand, within A4249_RS04435at 922.511 kb on + strand, within A4249_RS04435at 922.511 kb on + strand, within A4249_RS04435at 922.511 kb on + strand, within A4249_RS04435at 922.512 kb on - strand, within A4249_RS04435at 922.512 kb on - strand, within A4249_RS04435at 922.512 kb on - strand, within A4249_RS04435at 922.512 kb on - strand, within A4249_RS04435at 922.512 kb on - strand, within A4249_RS04435at 922.545 kb on + strand, within A4249_RS04435at 922.545 kb on + strand, within A4249_RS04435at 922.545 kb on + strand, within A4249_RS04435at 922.545 kb on + strand, within A4249_RS04435at 922.546 kb on - strand, within A4249_RS04435at 922.546 kb on - strand, within A4249_RS04435at 922.567 kb on + strand, within A4249_RS04435at 922.567 kb on + strand, within A4249_RS04435at 922.567 kb on + strand, within A4249_RS04435at 922.567 kb on + strand, within A4249_RS04435at 922.568 kb on - strand, within A4249_RS04435at 922.568 kb on - strand, within A4249_RS04435at 922.667 kb on - strandat 922.667 kb on - strandat 922.667 kb on - strandat 922.815 kb on - strandat 922.844 kb on + strandat 922.844 kb on + strandat 922.845 kb on - strandat 922.845 kb on - strandat 922.845 kb on - strandat 922.875 kb on + strandat 922.875 kb on + strandat 922.876 kb on - strandat 922.918 kb on + strandat 922.918 kb on + strandat 922.918 kb on + strandat 922.919 kb on - strandat 922.919 kb on - strandat 922.919 kb on - strandat 923.027 kb on + strand, within A4249_RS04440at 923.027 kb on + strand, within A4249_RS04440at 923.027 kb on + strand, within A4249_RS04440at 923.027 kb on + strand, within A4249_RS04440at 923.027 kb on + strand, within A4249_RS04440at 923.027 kb on + strand, within A4249_RS04440at 923.027 kb on + strand, within A4249_RS04440at 923.027 kb on + strand, within A4249_RS04440at 923.027 kb on + strand, within A4249_RS04440at 923.028 kb on - strand, within A4249_RS04440at 923.028 kb on - strand, within A4249_RS04440at 923.028 kb on - strand, within A4249_RS04440at 923.028 kb on - strand, within A4249_RS04440at 923.028 kb on - strand, within A4249_RS04440at 923.029 kb on + strand, within A4249_RS04440at 923.551 kb on + strand, within A4249_RS04440at 923.665 kb on + strand, within A4249_RS04440at 923.665 kb on + strand, within A4249_RS04440at 923.665 kb on + strand, within A4249_RS04440at 923.666 kb on - strand, within A4249_RS04440at 923.801 kb on - strand, within A4249_RS04440at 923.983 kb on + strand, within A4249_RS04440at 923.983 kb on + strand, within A4249_RS04440at 923.984 kb on - strand, within A4249_RS04440at 924.029 kb on - strand, within A4249_RS04440at 924.200 kb on - strandat 924.203 kb on + strandat 924.203 kb on + strandat 924.203 kb on + strandat 924.213 kb on - strandat 924.230 kb on + strandat 924.230 kb on + strandat 924.230 kb on + strandat 924.231 kb on - strandat 924.231 kb on - strandat 924.272 kb on + strandat 924.272 kb on + strandat 924.272 kb on + strandat 924.272 kb on + strandat 924.279 kb on + strandat 924.279 kb on + strandat 924.279 kb on + strandat 924.279 kb on + strandat 924.279 kb on + strandat 924.279 kb on + strandat 924.279 kb on + strandat 924.279 kb on + strandat 924.279 kb on + strandat 924.279 kb on + strandat 924.279 kb on + strandat 924.279 kb on + strandat 924.279 kb on + strandat 924.280 kb on - strandat 924.280 kb on - strandat 924.280 kb on - strandat 924.280 kb on - strandat 924.280 kb on - strandat 924.280 kb on - strandat 924.280 kb on - strandat 924.280 kb on - strandat 924.280 kb on - strandat 924.280 kb on - strandat 924.280 kb on - strandat 924.312 kb on + strandat 924.312 kb on + strandat 924.313 kb on - strandat 924.325 kb on - strandat 924.325 kb on - strandat 924.325 kb on - strandat 924.603 kb on + strand, within A4249_RS04445at 924.921 kb on + strand, within A4249_RS04445at 924.921 kb on + strand, within A4249_RS04445at 924.948 kb on + strand, within A4249_RS04445at 925.026 kb on + strand, within A4249_RS04445

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
remove
921,878 - A4249_RS04435 0.37 -0.2
921,958 + A4249_RS04435 0.43 +0.1
921,958 + A4249_RS04435 0.43 -0.2
921,958 + A4249_RS04435 0.43 -0.2
921,959 - A4249_RS04435 0.43 +0.1
921,959 - A4249_RS04435 0.43 +1.2
921,959 - A4249_RS04435 0.43 -0.3
921,988 + A4249_RS04435 0.45 -0.8
921,988 + A4249_RS04435 0.45 -1.2
921,989 - A4249_RS04435 0.45 +0.4
921,997 + A4249_RS04435 0.46 -0.3
921,997 + A4249_RS04435 0.46 -0.8
921,998 - A4249_RS04435 0.46 -0.6
921,998 - A4249_RS04435 0.46 -0.1
921,998 - A4249_RS04435 0.46 -0.1
922,058 + A4249_RS04435 0.50 +0.3
922,070 + A4249_RS04435 0.51 -1.1
922,167 + A4249_RS04435 0.58 +0.4
922,168 - A4249_RS04435 0.59 -1.5
922,168 - A4249_RS04435 0.59 +0.0
922,214 + A4249_RS04435 0.62 -0.6
922,214 + A4249_RS04435 0.62 +0.0
922,214 + A4249_RS04435 0.62 -0.3
922,214 + A4249_RS04435 0.62 +0.0
922,215 - A4249_RS04435 0.62 +0.5
922,215 - A4249_RS04435 0.62 -0.7
922,290 + A4249_RS04435 0.68 +0.6
922,290 + A4249_RS04435 0.68 -0.2
922,290 + A4249_RS04435 0.68 +0.4
922,291 - A4249_RS04435 0.68 +0.9
922,291 - A4249_RS04435 0.68 -0.4
922,291 - A4249_RS04435 0.68 -0.3
922,291 - A4249_RS04435 0.68 -1.0
922,297 + A4249_RS04435 0.68 -0.6
922,298 - A4249_RS04435 0.68 -0.3
922,298 - A4249_RS04435 0.68 -0.1
922,382 - A4249_RS04435 0.74 -0.5
922,382 - A4249_RS04435 0.74 +0.5
922,475 - A4249_RS04435 0.81 +0.1
922,475 - A4249_RS04435 0.81 -0.2
922,475 - A4249_RS04435 0.81 -0.0
922,511 + A4249_RS04435 0.84 -0.9
922,511 + A4249_RS04435 0.84 -0.1
922,511 + A4249_RS04435 0.84 -0.5
922,511 + A4249_RS04435 0.84 -0.1
922,511 + A4249_RS04435 0.84 -0.2
922,511 + A4249_RS04435 0.84 +0.3
922,512 - A4249_RS04435 0.84 -1.9
922,512 - A4249_RS04435 0.84 -0.1
922,512 - A4249_RS04435 0.84 +0.6
922,512 - A4249_RS04435 0.84 -0.3
922,512 - A4249_RS04435 0.84 +0.1
922,545 + A4249_RS04435 0.86 -0.4
922,545 + A4249_RS04435 0.86 +0.1
922,545 + A4249_RS04435 0.86 -0.6
922,545 + A4249_RS04435 0.86 +0.4
922,546 - A4249_RS04435 0.86 +0.2
922,546 - A4249_RS04435 0.86 +0.1
922,567 + A4249_RS04435 0.88 +0.4
922,567 + A4249_RS04435 0.88 +0.2
922,567 + A4249_RS04435 0.88 -1.2
922,567 + A4249_RS04435 0.88 -0.2
922,568 - A4249_RS04435 0.88 +0.1
922,568 - A4249_RS04435 0.88 -0.1
922,667 - -0.1
922,667 - -0.1
922,667 - -0.2
922,815 - -0.1
922,844 + +0.4
922,844 + -0.8
922,845 - -0.0
922,845 - +0.7
922,845 - -0.9
922,875 + +0.4
922,875 + +0.4
922,876 - +1.0
922,918 + +0.8
922,918 + -0.3
922,918 + -0.1
922,919 - +0.0
922,919 - +0.1
922,919 - -0.2
923,027 + A4249_RS04440 0.15 +0.2
923,027 + A4249_RS04440 0.15 -0.1
923,027 + A4249_RS04440 0.15 +0.3
923,027 + A4249_RS04440 0.15 -0.2
923,027 + A4249_RS04440 0.15 -0.1
923,027 + A4249_RS04440 0.15 -0.1
923,027 + A4249_RS04440 0.15 +0.6
923,027 + A4249_RS04440 0.15 +0.1
923,027 + A4249_RS04440 0.15 +0.2
923,028 - A4249_RS04440 0.15 +0.8
923,028 - A4249_RS04440 0.15 -0.4
923,028 - A4249_RS04440 0.15 +0.3
923,028 - A4249_RS04440 0.15 +0.7
923,028 - A4249_RS04440 0.15 -0.9
923,029 + A4249_RS04440 0.15 +0.4
923,551 + A4249_RS04440 0.54 -0.5
923,665 + A4249_RS04440 0.62 +0.5
923,665 + A4249_RS04440 0.62 -0.4
923,665 + A4249_RS04440 0.62 +0.0
923,666 - A4249_RS04440 0.62 +0.3
923,801 - A4249_RS04440 0.72 +0.4
923,983 + A4249_RS04440 0.86 -0.1
923,983 + A4249_RS04440 0.86 +0.1
923,984 - A4249_RS04440 0.86 +0.2
924,029 - A4249_RS04440 0.89 +0.3
924,200 - +0.3
924,203 + -0.2
924,203 + -0.5
924,203 + -0.1
924,213 - +0.2
924,230 + +0.1
924,230 + +0.2
924,230 + +0.0
924,231 - -0.2
924,231 - -0.0
924,272 + -0.3
924,272 + +0.5
924,272 + +0.0
924,272 + -0.4
924,279 + -0.0
924,279 + +0.2
924,279 + -0.2
924,279 + +0.2
924,279 + +0.0
924,279 + -0.2
924,279 + -1.4
924,279 + -0.3
924,279 + -0.6
924,279 + -0.6
924,279 + -0.3
924,279 + -2.3
924,279 + +0.1
924,280 - -0.9
924,280 - -0.1
924,280 - -0.4
924,280 - +0.4
924,280 - -0.9
924,280 - -2.0
924,280 - +0.0
924,280 - +0.6
924,280 - -1.1
924,280 - -0.0
924,280 - -0.3
924,312 + -0.1
924,312 + +0.4
924,313 - -0.6
924,325 - +0.4
924,325 - -0.3
924,325 - -0.3
924,603 + A4249_RS04445 0.18 -0.9
924,921 + A4249_RS04445 0.44 -0.1
924,921 + A4249_RS04445 0.44 +1.6
924,948 + A4249_RS04445 0.46 -1.0
925,026 + A4249_RS04445 0.52 -2.5

Or see this region's nucleotide sequence