Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS00035

Experiment: Thymine 0.793 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS00025 and A4249_RS00030 overlap by 17 nucleotidesA4249_RS00030 and A4249_RS00035 are separated by 5 nucleotidesA4249_RS00035 and A4249_RS00040 are separated by 36 nucleotidesA4249_RS00040 and A4249_RS00045 are separated by 79 nucleotides A4249_RS00025: A4249_RS00025 - retropepsin-like aspartic protease, at 4,734 to 5,681 _RS00025 A4249_RS00030: A4249_RS00030 - hypothetical protein, at 5,665 to 6,123 _RS00030 A4249_RS00035: A4249_RS00035 - phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent), at 6,129 to 7,766 _RS00035 A4249_RS00040: A4249_RS00040 - neutral zinc metallopeptidase, at 7,803 to 8,654 _RS00040 A4249_RS00045: A4249_RS00045 - hypothetical protein, at 8,734 to 9,123 _RS00045 Position (kb) 6 7 8Strain fitness (log2 ratio) -1 0 1at 5.795 kb on + strand, within A4249_RS00030at 5.795 kb on + strand, within A4249_RS00030at 6.059 kb on + strand, within A4249_RS00030at 6.059 kb on + strand, within A4249_RS00030at 6.059 kb on + strand, within A4249_RS00030at 6.059 kb on + strand, within A4249_RS00030at 6.059 kb on + strand, within A4249_RS00030at 6.059 kb on + strand, within A4249_RS00030at 6.059 kb on + strand, within A4249_RS00030at 6.059 kb on + strand, within A4249_RS00030at 6.059 kb on + strand, within A4249_RS00030at 6.060 kb on - strand, within A4249_RS00030at 6.060 kb on - strand, within A4249_RS00030at 6.060 kb on - strand, within A4249_RS00030at 6.060 kb on - strand, within A4249_RS00030at 6.060 kb on - strand, within A4249_RS00030at 6.060 kb on - strand, within A4249_RS00030at 6.077 kb on + strand, within A4249_RS00030at 6.077 kb on + strand, within A4249_RS00030at 6.077 kb on + strand, within A4249_RS00030at 6.077 kb on + strand, within A4249_RS00030at 6.077 kb on + strand, within A4249_RS00030at 6.077 kb on + strand, within A4249_RS00030at 6.078 kb on - strandat 6.078 kb on - strandat 6.078 kb on - strandat 6.089 kb on + strandat 6.214 kb on + strandat 6.214 kb on + strandat 6.224 kb on - strandat 6.224 kb on - strandat 6.433 kb on + strand, within A4249_RS00035at 6.469 kb on + strand, within A4249_RS00035at 6.469 kb on + strand, within A4249_RS00035at 6.469 kb on + strand, within A4249_RS00035at 6.470 kb on - strand, within A4249_RS00035at 6.470 kb on - strand, within A4249_RS00035at 6.470 kb on - strand, within A4249_RS00035at 6.555 kb on + strand, within A4249_RS00035at 6.556 kb on - strand, within A4249_RS00035at 6.775 kb on + strand, within A4249_RS00035at 6.775 kb on + strand, within A4249_RS00035at 6.775 kb on + strand, within A4249_RS00035at 6.776 kb on - strand, within A4249_RS00035at 6.776 kb on - strand, within A4249_RS00035at 6.776 kb on - strand, within A4249_RS00035at 6.880 kb on + strand, within A4249_RS00035at 6.880 kb on + strand, within A4249_RS00035at 7.051 kb on + strand, within A4249_RS00035at 7.051 kb on + strand, within A4249_RS00035at 7.051 kb on + strand, within A4249_RS00035at 7.052 kb on - strand, within A4249_RS00035at 7.052 kb on - strand, within A4249_RS00035at 7.052 kb on - strand, within A4249_RS00035at 7.146 kb on - strand, within A4249_RS00035at 7.146 kb on - strand, within A4249_RS00035at 7.147 kb on + strand, within A4249_RS00035at 7.147 kb on + strand, within A4249_RS00035at 7.147 kb on + strand, within A4249_RS00035at 7.147 kb on + strand, within A4249_RS00035at 7.147 kb on + strand, within A4249_RS00035at 7.148 kb on - strand, within A4249_RS00035at 7.148 kb on - strand, within A4249_RS00035at 7.148 kb on - strand, within A4249_RS00035at 7.148 kb on - strand, within A4249_RS00035at 7.148 kb on - strand, within A4249_RS00035at 7.148 kb on - strand, within A4249_RS00035at 7.159 kb on + strand, within A4249_RS00035at 7.160 kb on - strand, within A4249_RS00035at 7.303 kb on + strand, within A4249_RS00035at 7.303 kb on + strand, within A4249_RS00035at 7.303 kb on + strand, within A4249_RS00035at 7.303 kb on + strand, within A4249_RS00035at 7.303 kb on + strand, within A4249_RS00035at 7.303 kb on + strand, within A4249_RS00035at 7.303 kb on + strand, within A4249_RS00035at 7.303 kb on + strand, within A4249_RS00035at 7.303 kb on + strand, within A4249_RS00035at 7.303 kb on + strand, within A4249_RS00035at 7.303 kb on + strand, within A4249_RS00035at 7.304 kb on - strand, within A4249_RS00035at 7.304 kb on - strand, within A4249_RS00035at 7.304 kb on - strand, within A4249_RS00035at 7.304 kb on - strand, within A4249_RS00035at 7.304 kb on - strand, within A4249_RS00035at 7.304 kb on - strand, within A4249_RS00035at 7.304 kb on - strand, within A4249_RS00035at 7.304 kb on - strand, within A4249_RS00035at 7.304 kb on - strand, within A4249_RS00035at 7.304 kb on - strand, within A4249_RS00035at 7.304 kb on - strand, within A4249_RS00035at 7.304 kb on - strand, within A4249_RS00035at 7.304 kb on - strand, within A4249_RS00035at 7.370 kb on + strand, within A4249_RS00035at 7.371 kb on - strand, within A4249_RS00035at 7.415 kb on + strand, within A4249_RS00035at 7.561 kb on + strand, within A4249_RS00035at 7.697 kb on - strandat 7.970 kb on + strand, within A4249_RS00040at 7.970 kb on + strand, within A4249_RS00040at 7.970 kb on + strand, within A4249_RS00040at 7.970 kb on + strand, within A4249_RS00040at 7.970 kb on + strand, within A4249_RS00040at 7.971 kb on - strand, within A4249_RS00040at 8.050 kb on + strand, within A4249_RS00040at 8.050 kb on + strand, within A4249_RS00040at 8.051 kb on - strand, within A4249_RS00040at 8.051 kb on - strand, within A4249_RS00040at 8.083 kb on + strand, within A4249_RS00040at 8.084 kb on - strand, within A4249_RS00040at 8.084 kb on - strand, within A4249_RS00040at 8.084 kb on - strand, within A4249_RS00040at 8.191 kb on + strand, within A4249_RS00040at 8.191 kb on + strand, within A4249_RS00040at 8.191 kb on + strand, within A4249_RS00040at 8.191 kb on + strand, within A4249_RS00040at 8.191 kb on + strand, within A4249_RS00040at 8.191 kb on + strand, within A4249_RS00040at 8.192 kb on - strand, within A4249_RS00040at 8.192 kb on - strand, within A4249_RS00040at 8.192 kb on - strand, within A4249_RS00040at 8.192 kb on - strand, within A4249_RS00040at 8.192 kb on - strand, within A4249_RS00040at 8.192 kb on - strand, within A4249_RS00040at 8.192 kb on - strand, within A4249_RS00040at 8.192 kb on - strand, within A4249_RS00040at 8.192 kb on - strand, within A4249_RS00040at 8.192 kb on - strand, within A4249_RS00040at 8.263 kb on + strand, within A4249_RS00040at 8.263 kb on + strand, within A4249_RS00040at 8.263 kb on + strand, within A4249_RS00040at 8.264 kb on - strand, within A4249_RS00040at 8.287 kb on + strand, within A4249_RS00040at 8.287 kb on + strand, within A4249_RS00040at 8.288 kb on - strand, within A4249_RS00040at 8.288 kb on - strand, within A4249_RS00040at 8.288 kb on - strand, within A4249_RS00040at 8.288 kb on - strand, within A4249_RS00040at 8.288 kb on - strand, within A4249_RS00040at 8.288 kb on - strand, within A4249_RS00040at 8.288 kb on - strand, within A4249_RS00040at 8.288 kb on - strand, within A4249_RS00040at 8.315 kb on - strand, within A4249_RS00040at 8.315 kb on - strand, within A4249_RS00040at 8.344 kb on + strand, within A4249_RS00040at 8.345 kb on - strand, within A4249_RS00040at 8.368 kb on + strand, within A4249_RS00040at 8.403 kb on - strand, within A4249_RS00040at 8.403 kb on - strand, within A4249_RS00040at 8.403 kb on - strand, within A4249_RS00040at 8.403 kb on - strand, within A4249_RS00040at 8.542 kb on + strand, within A4249_RS00040at 8.543 kb on - strand, within A4249_RS00040at 8.659 kb on + strandat 8.659 kb on + strandat 8.681 kb on + strandat 8.682 kb on - strandat 8.682 kb on - strandat 8.682 kb on - strandat 8.686 kb on + strandat 8.686 kb on + strandat 8.686 kb on + strandat 8.686 kb on + strandat 8.687 kb on - strandat 8.687 kb on - strandat 8.687 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Thymine 0.793 mM (C)
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5,795 + A4249_RS00030 0.28 +0.5
5,795 + A4249_RS00030 0.28 -0.1
6,059 + A4249_RS00030 0.86 +1.1
6,059 + A4249_RS00030 0.86 +0.2
6,059 + A4249_RS00030 0.86 -0.6
6,059 + A4249_RS00030 0.86 -0.1
6,059 + A4249_RS00030 0.86 -0.2
6,059 + A4249_RS00030 0.86 -0.1
6,059 + A4249_RS00030 0.86 +0.8
6,059 + A4249_RS00030 0.86 +0.2
6,059 + A4249_RS00030 0.86 +0.2
6,060 - A4249_RS00030 0.86 +1.3
6,060 - A4249_RS00030 0.86 +0.1
6,060 - A4249_RS00030 0.86 +0.7
6,060 - A4249_RS00030 0.86 -0.5
6,060 - A4249_RS00030 0.86 -0.8
6,060 - A4249_RS00030 0.86 -0.0
6,077 + A4249_RS00030 0.90 -0.0
6,077 + A4249_RS00030 0.90 +0.0
6,077 + A4249_RS00030 0.90 +0.5
6,077 + A4249_RS00030 0.90 -0.6
6,077 + A4249_RS00030 0.90 -0.6
6,077 + A4249_RS00030 0.90 +0.5
6,078 - +0.7
6,078 - +1.0
6,078 - +0.8
6,089 + -0.2
6,214 + -0.9
6,214 + -0.2
6,224 - -0.1
6,224 - -0.3
6,433 + A4249_RS00035 0.19 +0.3
6,469 + A4249_RS00035 0.21 +0.3
6,469 + A4249_RS00035 0.21 +0.2
6,469 + A4249_RS00035 0.21 +0.4
6,470 - A4249_RS00035 0.21 -0.2
6,470 - A4249_RS00035 0.21 +0.6
6,470 - A4249_RS00035 0.21 +0.4
6,555 + A4249_RS00035 0.26 +1.0
6,556 - A4249_RS00035 0.26 +0.5
6,775 + A4249_RS00035 0.39 -0.3
6,775 + A4249_RS00035 0.39 +0.0
6,775 + A4249_RS00035 0.39 -0.0
6,776 - A4249_RS00035 0.39 -0.8
6,776 - A4249_RS00035 0.39 +0.2
6,776 - A4249_RS00035 0.39 +0.6
6,880 + A4249_RS00035 0.46 +0.3
6,880 + A4249_RS00035 0.46 +0.5
7,051 + A4249_RS00035 0.56 +0.5
7,051 + A4249_RS00035 0.56 +0.7
7,051 + A4249_RS00035 0.56 -0.0
7,052 - A4249_RS00035 0.56 +0.7
7,052 - A4249_RS00035 0.56 +0.1
7,052 - A4249_RS00035 0.56 -0.1
7,146 - A4249_RS00035 0.62 +0.1
7,146 - A4249_RS00035 0.62 +0.0
7,147 + A4249_RS00035 0.62 -0.3
7,147 + A4249_RS00035 0.62 +0.2
7,147 + A4249_RS00035 0.62 +1.0
7,147 + A4249_RS00035 0.62 +0.4
7,147 + A4249_RS00035 0.62 +0.2
7,148 - A4249_RS00035 0.62 -0.4
7,148 - A4249_RS00035 0.62 +0.6
7,148 - A4249_RS00035 0.62 -0.3
7,148 - A4249_RS00035 0.62 -0.4
7,148 - A4249_RS00035 0.62 +1.2
7,148 - A4249_RS00035 0.62 -0.1
7,159 + A4249_RS00035 0.63 -0.5
7,160 - A4249_RS00035 0.63 +0.3
7,303 + A4249_RS00035 0.72 +0.5
7,303 + A4249_RS00035 0.72 -0.2
7,303 + A4249_RS00035 0.72 -1.6
7,303 + A4249_RS00035 0.72 +0.5
7,303 + A4249_RS00035 0.72 -0.1
7,303 + A4249_RS00035 0.72 -0.5
7,303 + A4249_RS00035 0.72 +0.0
7,303 + A4249_RS00035 0.72 +0.3
7,303 + A4249_RS00035 0.72 +0.2
7,303 + A4249_RS00035 0.72 +0.1
7,303 + A4249_RS00035 0.72 +0.2
7,304 - A4249_RS00035 0.72 +0.6
7,304 - A4249_RS00035 0.72 +0.1
7,304 - A4249_RS00035 0.72 +0.3
7,304 - A4249_RS00035 0.72 -0.6
7,304 - A4249_RS00035 0.72 -0.4
7,304 - A4249_RS00035 0.72 -0.5
7,304 - A4249_RS00035 0.72 -1.0
7,304 - A4249_RS00035 0.72 +0.5
7,304 - A4249_RS00035 0.72 +0.0
7,304 - A4249_RS00035 0.72 +0.4
7,304 - A4249_RS00035 0.72 +0.1
7,304 - A4249_RS00035 0.72 +0.5
7,304 - A4249_RS00035 0.72 +0.0
7,370 + A4249_RS00035 0.76 +0.1
7,371 - A4249_RS00035 0.76 +0.2
7,415 + A4249_RS00035 0.79 +0.2
7,561 + A4249_RS00035 0.87 -0.4
7,697 - +0.3
7,970 + A4249_RS00040 0.20 +0.4
7,970 + A4249_RS00040 0.20 +0.3
7,970 + A4249_RS00040 0.20 -0.1
7,970 + A4249_RS00040 0.20 -0.1
7,970 + A4249_RS00040 0.20 +0.3
7,971 - A4249_RS00040 0.20 -0.5
8,050 + A4249_RS00040 0.29 +0.6
8,050 + A4249_RS00040 0.29 +0.3
8,051 - A4249_RS00040 0.29 +0.3
8,051 - A4249_RS00040 0.29 -0.2
8,083 + A4249_RS00040 0.33 +0.8
8,084 - A4249_RS00040 0.33 -0.6
8,084 - A4249_RS00040 0.33 -0.1
8,084 - A4249_RS00040 0.33 +0.0
8,191 + A4249_RS00040 0.46 -0.8
8,191 + A4249_RS00040 0.46 +0.0
8,191 + A4249_RS00040 0.46 +0.8
8,191 + A4249_RS00040 0.46 -0.2
8,191 + A4249_RS00040 0.46 +0.6
8,191 + A4249_RS00040 0.46 +0.2
8,192 - A4249_RS00040 0.46 -0.1
8,192 - A4249_RS00040 0.46 -0.8
8,192 - A4249_RS00040 0.46 +1.2
8,192 - A4249_RS00040 0.46 +0.5
8,192 - A4249_RS00040 0.46 +1.2
8,192 - A4249_RS00040 0.46 -1.2
8,192 - A4249_RS00040 0.46 -0.1
8,192 - A4249_RS00040 0.46 +0.3
8,192 - A4249_RS00040 0.46 +0.6
8,192 - A4249_RS00040 0.46 +0.8
8,263 + A4249_RS00040 0.54 -0.5
8,263 + A4249_RS00040 0.54 +0.5
8,263 + A4249_RS00040 0.54 -0.3
8,264 - A4249_RS00040 0.54 +1.1
8,287 + A4249_RS00040 0.57 +0.8
8,287 + A4249_RS00040 0.57 +0.6
8,288 - A4249_RS00040 0.57 +0.6
8,288 - A4249_RS00040 0.57 +0.6
8,288 - A4249_RS00040 0.57 +0.2
8,288 - A4249_RS00040 0.57 -0.3
8,288 - A4249_RS00040 0.57 +1.7
8,288 - A4249_RS00040 0.57 -0.2
8,288 - A4249_RS00040 0.57 -1.7
8,288 - A4249_RS00040 0.57 -0.1
8,315 - A4249_RS00040 0.60 +0.9
8,315 - A4249_RS00040 0.60 +0.2
8,344 + A4249_RS00040 0.63 -0.6
8,345 - A4249_RS00040 0.64 +0.2
8,368 + A4249_RS00040 0.66 +0.4
8,403 - A4249_RS00040 0.70 -0.1
8,403 - A4249_RS00040 0.70 +0.0
8,403 - A4249_RS00040 0.70 -0.4
8,403 - A4249_RS00040 0.70 +0.2
8,542 + A4249_RS00040 0.87 +0.2
8,543 - A4249_RS00040 0.87 -0.8
8,659 + -0.3
8,659 + +0.4
8,681 + -0.4
8,682 - +0.8
8,682 - +0.7
8,682 - -0.1
8,686 + -0.4
8,686 + -1.4
8,686 + +0.6
8,686 + +0.3
8,687 - -0.0
8,687 - +0.8
8,687 - +0.3

Or see this region's nucleotide sequence