Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABI39_RS21250 and ABI39_RS21255 overlap by 4 nucleotides ABI39_RS21255 and ABI39_RS21260 are separated by 58 nucleotides ABI39_RS21260 and ABI39_RS21265 are separated by 4 nucleotides
ABI39_RS21250: ABI39_RS21250 - hypothetical protein, at 5,233,428 to 5,234,357
_RS21250
ABI39_RS21255: ABI39_RS21255 - ABC transporter ATP-binding protein, at 5,234,354 to 5,235,031
_RS21255
ABI39_RS21260: ABI39_RS21260 - carboxypeptidase-like regulatory domain-containing protein, at 5,235,090 to 5,237,750
_RS21260
ABI39_RS21265: ABI39_RS21265 - GLPGLI family protein, at 5,237,755 to 5,238,621
_RS21265
Position (kb) 5235
5236
5237
5238 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5234.102 kb on + strand, within ABI39_RS21250 at 5234.152 kb on - strand, within ABI39_RS21250 at 5234.169 kb on + strand, within ABI39_RS21250 at 5234.237 kb on - strand, within ABI39_RS21250 at 5234.378 kb on - strand at 5234.440 kb on - strand, within ABI39_RS21255 at 5234.481 kb on + strand, within ABI39_RS21255 at 5234.504 kb on + strand, within ABI39_RS21255 at 5234.510 kb on + strand, within ABI39_RS21255 at 5234.576 kb on + strand, within ABI39_RS21255 at 5234.615 kb on - strand, within ABI39_RS21255 at 5234.766 kb on + strand, within ABI39_RS21255 at 5234.812 kb on + strand, within ABI39_RS21255 at 5234.866 kb on - strand, within ABI39_RS21255 at 5234.909 kb on - strand, within ABI39_RS21255 at 5234.985 kb on + strand at 5234.985 kb on + strand at 5234.988 kb on + strand at 5235.069 kb on + strand at 5235.116 kb on + strand at 5235.177 kb on - strand at 5235.209 kb on + strand at 5235.595 kb on + strand, within ABI39_RS21260 at 5235.595 kb on + strand, within ABI39_RS21260 at 5235.628 kb on + strand, within ABI39_RS21260 at 5235.629 kb on - strand, within ABI39_RS21260 at 5235.689 kb on + strand, within ABI39_RS21260 at 5235.786 kb on - strand, within ABI39_RS21260 at 5235.787 kb on + strand, within ABI39_RS21260 at 5236.070 kb on - strand, within ABI39_RS21260 at 5236.093 kb on + strand, within ABI39_RS21260 at 5236.097 kb on + strand, within ABI39_RS21260 at 5236.098 kb on - strand, within ABI39_RS21260 at 5236.142 kb on + strand, within ABI39_RS21260 at 5236.199 kb on - strand, within ABI39_RS21260 at 5236.226 kb on - strand, within ABI39_RS21260 at 5236.247 kb on - strand, within ABI39_RS21260 at 5236.247 kb on - strand, within ABI39_RS21260 at 5236.247 kb on - strand, within ABI39_RS21260 at 5236.451 kb on - strand, within ABI39_RS21260 at 5236.609 kb on - strand, within ABI39_RS21260 at 5236.671 kb on - strand, within ABI39_RS21260 at 5236.684 kb on + strand, within ABI39_RS21260 at 5236.685 kb on - strand, within ABI39_RS21260 at 5236.732 kb on + strand, within ABI39_RS21260 at 5236.898 kb on + strand, within ABI39_RS21260 at 5236.949 kb on + strand, within ABI39_RS21260 at 5236.961 kb on - strand, within ABI39_RS21260 at 5236.961 kb on - strand, within ABI39_RS21260 at 5236.961 kb on - strand, within ABI39_RS21260 at 5236.967 kb on - strand, within ABI39_RS21260 at 5236.967 kb on - strand, within ABI39_RS21260 at 5237.249 kb on - strand, within ABI39_RS21260 at 5237.275 kb on + strand, within ABI39_RS21260 at 5237.334 kb on + strand, within ABI39_RS21260 at 5237.384 kb on + strand, within ABI39_RS21260 at 5237.478 kb on - strand, within ABI39_RS21260 at 5237.482 kb on - strand, within ABI39_RS21260 at 5237.513 kb on - strand at 5237.586 kb on - strand at 5237.601 kb on - strand at 5238.282 kb on + strand, within ABI39_RS21265 at 5238.283 kb on - strand, within ABI39_RS21265 at 5238.343 kb on - strand, within ABI39_RS21265 at 5238.382 kb on - strand, within ABI39_RS21265 at 5238.459 kb on + strand, within ABI39_RS21265
Per-strain Table
Position Strand Gene LocusTag Fraction Amylopectin from Potato; autoclaved 2.5 mg/ml (C) remove 5,234,102 + ABI39_RS21250 0.72 -1.9 5,234,152 - ABI39_RS21250 0.78 -0.5 5,234,169 + ABI39_RS21250 0.80 +1.0 5,234,237 - ABI39_RS21250 0.87 -2.6 5,234,378 - +1.0 5,234,440 - ABI39_RS21255 0.13 -1.7 5,234,481 + ABI39_RS21255 0.19 +0.0 5,234,504 + ABI39_RS21255 0.22 -0.3 5,234,510 + ABI39_RS21255 0.23 +1.3 5,234,576 + ABI39_RS21255 0.33 +1.0 5,234,615 - ABI39_RS21255 0.38 -0.4 5,234,766 + ABI39_RS21255 0.61 +1.0 5,234,812 + ABI39_RS21255 0.68 +0.1 5,234,866 - ABI39_RS21255 0.76 +2.6 5,234,909 - ABI39_RS21255 0.82 +1.1 5,234,985 + +0.3 5,234,985 + -0.7 5,234,988 + -3.2 5,235,069 + +1.2 5,235,116 + +0.2 5,235,177 - +1.1 5,235,209 + -0.2 5,235,595 + ABI39_RS21260 0.19 -0.1 5,235,595 + ABI39_RS21260 0.19 -1.4 5,235,628 + ABI39_RS21260 0.20 -0.6 5,235,629 - ABI39_RS21260 0.20 -0.9 5,235,689 + ABI39_RS21260 0.23 -2.3 5,235,786 - ABI39_RS21260 0.26 +0.9 5,235,787 + ABI39_RS21260 0.26 -0.3 5,236,070 - ABI39_RS21260 0.37 -0.2 5,236,093 + ABI39_RS21260 0.38 +0.4 5,236,097 + ABI39_RS21260 0.38 +0.6 5,236,098 - ABI39_RS21260 0.38 +1.0 5,236,142 + ABI39_RS21260 0.40 +3.9 5,236,199 - ABI39_RS21260 0.42 -0.2 5,236,226 - ABI39_RS21260 0.43 +0.9 5,236,247 - ABI39_RS21260 0.43 -0.7 5,236,247 - ABI39_RS21260 0.43 -1.7 5,236,247 - ABI39_RS21260 0.43 +0.2 5,236,451 - ABI39_RS21260 0.51 -0.7 5,236,609 - ABI39_RS21260 0.57 -0.6 5,236,671 - ABI39_RS21260 0.59 +0.7 5,236,684 + ABI39_RS21260 0.60 +0.2 5,236,685 - ABI39_RS21260 0.60 +0.8 5,236,732 + ABI39_RS21260 0.62 -0.7 5,236,898 + ABI39_RS21260 0.68 -0.6 5,236,949 + ABI39_RS21260 0.70 +0.5 5,236,961 - ABI39_RS21260 0.70 -2.2 5,236,961 - ABI39_RS21260 0.70 -0.7 5,236,961 - ABI39_RS21260 0.70 -0.3 5,236,967 - ABI39_RS21260 0.71 -0.8 5,236,967 - ABI39_RS21260 0.71 -0.1 5,237,249 - ABI39_RS21260 0.81 +0.8 5,237,275 + ABI39_RS21260 0.82 -1.5 5,237,334 + ABI39_RS21260 0.84 -1.6 5,237,384 + ABI39_RS21260 0.86 +1.4 5,237,478 - ABI39_RS21260 0.90 -0.0 5,237,482 - ABI39_RS21260 0.90 -1.2 5,237,513 - -0.4 5,237,586 - +0.9 5,237,601 - -1.3 5,238,282 + ABI39_RS21265 0.61 -0.1 5,238,283 - ABI39_RS21265 0.61 +0.9 5,238,343 - ABI39_RS21265 0.68 +0.4 5,238,382 - ABI39_RS21265 0.72 +2.1 5,238,459 + ABI39_RS21265 0.81 +0.3
Or see this region's nucleotide sequence