Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS18430

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
4,641,665	-		ABI39_RS18425	0.54	+1.6
4,641,700	+		ABI39_RS18425	0.56	+2.4
4,641,858	-		ABI39_RS18425	0.64	-1.0
4,641,858	-		ABI39_RS18425	0.64	-1.0
4,641,858	-		ABI39_RS18425	0.64	+1.2
4,641,858	-		ABI39_RS18425	0.64	+0.9
4,641,923	+		ABI39_RS18425	0.67	+0.1
4,641,926	+		ABI39_RS18425	0.67	-0.1
4,641,935	+		ABI39_RS18425	0.68	-0.3
4,641,935	+		ABI39_RS18425	0.68	+1.7
4,641,947	-		ABI39_RS18425	0.69	+1.6
4,642,001	+		ABI39_RS18425	0.71	+2.2
4,642,062	+		ABI39_RS18425	0.74	+0.5
4,642,097	-		ABI39_RS18425	0.76	+3.0
4,642,150	+		ABI39_RS18425	0.79	+1.5
4,642,222	+		ABI39_RS18425	0.82	+1.4
4,642,223	-		ABI39_RS18425	0.82	+1.3
4,642,232	+		ABI39_RS18425	0.83	+0.3
4,642,246	+		ABI39_RS18425	0.83	+1.7
4,642,273	+		ABI39_RS18425	0.85	+0.5
4,642,331	+		ABI39_RS18425	0.88	+2.5
4,642,344	+		ABI39_RS18425	0.88	-1.1
4,642,345	-		ABI39_RS18425	0.88	-3.0
4,642,352	-		ABI39_RS18425	0.89	+0.1
4,642,356	-		ABI39_RS18425	0.89	-0.4
4,642,356	-		ABI39_RS18425	0.89	+1.6
4,642,399	+				+0.7
4,642,464	+				+0.7
4,642,465	-				+1.6
4,642,540	+				+1.3
4,642,552	-				-2.8
4,642,576	+				+1.7
4,642,577	-				-0.1
4,642,594	+				-0.1
4,642,595	-				+0.1
4,642,597	+				+0.1
4,642,597	+				+0.8
4,642,597	+				+0.1
4,642,598	-				-0.7
4,642,604	-				+2.3
4,642,612	-				-0.3
4,642,612	-				-1.7
4,642,654	+				-0.1
4,642,823	-		ABI39_RS18430	0.17	+0.9
4,642,924	-		ABI39_RS18430	0.24	+1.2
4,643,017	-		ABI39_RS18430	0.31	-3.5
4,643,019	-		ABI39_RS18430	0.31	-0.4
4,643,025	-		ABI39_RS18430	0.32	+0.9
4,643,039	+		ABI39_RS18430	0.33	-1.1
4,643,106	+		ABI39_RS18430	0.37	-0.3
4,643,106	+		ABI39_RS18430	0.37	+1.2
4,643,106	+		ABI39_RS18430	0.37	+0.7
4,643,116	-		ABI39_RS18430	0.38	-0.1
4,643,120	-		ABI39_RS18430	0.38	-1.1
4,643,120	-		ABI39_RS18430	0.38	+1.2
4,643,155	-		ABI39_RS18430	0.41	+0.4
4,643,210	-		ABI39_RS18430	0.45	+0.9
4,643,257	-		ABI39_RS18430	0.48	-0.3
4,643,307	+		ABI39_RS18430	0.51	+0.3
4,643,328	+		ABI39_RS18430	0.53	-0.0
4,643,379	+		ABI39_RS18430	0.57	-0.8
4,643,395	-		ABI39_RS18430	0.58	+1.9
4,643,414	-		ABI39_RS18430	0.59	+0.9
4,643,420	-		ABI39_RS18430	0.59	-1.7
4,643,422	+		ABI39_RS18430	0.60	+1.5
4,643,422	+		ABI39_RS18430	0.60	-3.4
4,643,423	-		ABI39_RS18430	0.60	-2.9
4,643,427	+		ABI39_RS18430	0.60	+1.0
4,643,430	-		ABI39_RS18430	0.60	+0.1
4,643,444	-		ABI39_RS18430	0.61	+0.5
4,643,464	+		ABI39_RS18430	0.63	-0.1
4,643,529	+		ABI39_RS18430	0.67	-0.6
4,643,533	+		ABI39_RS18430	0.67	-0.8
4,643,542	+		ABI39_RS18430	0.68	-3.6
4,643,564	-		ABI39_RS18430	0.70	+0.3
4,643,659	+		ABI39_RS18430	0.76	-0.8
4,643,663	+		ABI39_RS18430	0.77	-1.2
4,643,664	-		ABI39_RS18430	0.77	+1.6
4,643,664	-		ABI39_RS18430	0.77	-2.4
4,643,711	-		ABI39_RS18430	0.80	+3.0
4,643,748	+		ABI39_RS18430	0.83	+0.6
4,643,748	+		ABI39_RS18430	0.83	-2.8
4,643,750	+		ABI39_RS18430	0.83	+2.0
4,643,764	+		ABI39_RS18430	0.84	+0.6
4,643,825	-		ABI39_RS18430	0.88	+1.2
4,643,836	-		ABI39_RS18430	0.89	+1.2
4,643,839	-		ABI39_RS18430	0.89	+1.0
4,643,839	-		ABI39_RS18430	0.89	-0.6
4,643,839	-		ABI39_RS18430	0.89	+2.1
4,643,840	+		ABI39_RS18430	0.89	+0.3
4,643,840	+		ABI39_RS18430	0.89	+0.1
4,643,841	-		ABI39_RS18430	0.89	+1.1
4,643,842	+		ABI39_RS18430	0.89	+2.2
4,643,842	+		ABI39_RS18430	0.89	+2.0
4,643,843	-		ABI39_RS18430	0.89	+0.4
4,643,843	-		ABI39_RS18430	0.89	-1.8
4,643,851	+		ABI39_RS18430	0.90	+1.1
4,643,893	+				+0.6
4,643,922	-				+0.0
4,644,025	-				-1.1
4,644,049	+				+1.6
4,644,049	+				+0.8
4,644,050	-				-0.1
4,644,232	-				-0.8
4,644,237	+				+1.1
4,644,255	-				+0.9
4,644,268	+				+1.0
4,644,277	+				+0.9
4,644,314	-				+0.5
4,644,369	+				-1.4
4,644,433	-				+0.1
4,644,440	-				+0.4
4,644,483	-		ABI39_RS18435	0.10	+1.1
4,644,523	-		ABI39_RS18435	0.11	+0.6
4,644,528	-		ABI39_RS18435	0.11	-1.2
4,644,528	-		ABI39_RS18435	0.11	-0.6
4,644,593	-		ABI39_RS18435	0.13	+2.5
4,644,653	+		ABI39_RS18435	0.14	+2.1
4,644,655	+		ABI39_RS18435	0.14	+1.2
4,644,669	+		ABI39_RS18435	0.15	-1.2
4,644,689	+		ABI39_RS18435	0.15	-0.4
4,644,699	-		ABI39_RS18435	0.15	+1.6
4,644,728	-		ABI39_RS18435	0.16	-1.0
4,644,728	-		ABI39_RS18435	0.16	+2.1
4,644,736	+		ABI39_RS18435	0.16	-0.5
4,644,737	-		ABI39_RS18435	0.16	+1.8
4,644,737	-		ABI39_RS18435	0.16	+0.6
4,644,741	+		ABI39_RS18435	0.16	+2.0
4,644,811	+		ABI39_RS18435	0.18	-0.5
4,644,835	-		ABI39_RS18435	0.19	+0.9
4,644,943	+		ABI39_RS18435	0.21	-2.3
4,644,944	-		ABI39_RS18435	0.21	-2.4