Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS17210

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
4,353,927	+		ABI39_RS17205	0.74	-1.5
4,354,200	-		ABI39_RS17205	0.85	-1.2
4,354,422	+				+0.1
4,354,681	+				-1.1
4,354,682	-				+1.5
4,354,683	+				+1.0
4,354,684	-				+0.6
4,354,686	-				-2.2
4,354,694	-				-1.2
4,354,710	+				+1.6
4,354,711	-				-2.6
4,354,729	-				+1.1
4,354,890	+				+1.4
4,354,891	-				-1.2
4,354,891	-				+0.8
4,354,902	-				+2.1
4,354,972	+		ABI39_RS17210	0.13	+1.1
4,354,973	-		ABI39_RS17210	0.13	+0.3
4,354,973	-		ABI39_RS17210	0.13	-1.8
4,354,975	-		ABI39_RS17210	0.13	-1.8
4,354,985	+		ABI39_RS17210	0.13	+0.9
4,355,068	+		ABI39_RS17210	0.17	+1.7
4,355,069	-		ABI39_RS17210	0.17	+2.1
4,355,221	-		ABI39_RS17210	0.25	+1.1
4,355,222	+		ABI39_RS17210	0.25	+0.3
4,355,281	+		ABI39_RS17210	0.28	+0.7
4,355,369	+		ABI39_RS17210	0.32	+1.1
4,355,521	-		ABI39_RS17210	0.39	-1.5
4,355,596	+		ABI39_RS17210	0.43	-0.2
4,355,597	-		ABI39_RS17210	0.43	-1.3
4,355,597	-		ABI39_RS17210	0.43	-0.2
4,355,734	+		ABI39_RS17210	0.50	+1.7
4,355,833	+		ABI39_RS17210	0.55	+0.8
4,355,909	-		ABI39_RS17210	0.58	+1.6
4,355,913	+		ABI39_RS17210	0.59	+0.4
4,355,917	+		ABI39_RS17210	0.59	+2.8
4,355,977	+		ABI39_RS17210	0.62	+0.2
4,355,977	+		ABI39_RS17210	0.62	+1.5
4,355,978	-		ABI39_RS17210	0.62	-0.1
4,356,013	+		ABI39_RS17210	0.63	+0.7
4,356,048	-		ABI39_RS17210	0.65	+1.2
4,356,074	+		ABI39_RS17210	0.66	-1.5
4,356,075	-		ABI39_RS17210	0.67	-1.1
4,356,078	+		ABI39_RS17210	0.67	+0.5
4,356,084	-		ABI39_RS17210	0.67	-0.2
4,356,084	-		ABI39_RS17210	0.67	-0.8
4,356,209	+		ABI39_RS17210	0.73	+0.8
4,356,298	-		ABI39_RS17210	0.77	+0.3
4,356,298	-		ABI39_RS17210	0.77	+0.9
4,356,320	-		ABI39_RS17210	0.78	+1.8
4,356,393	+		ABI39_RS17210	0.82	+1.2
4,356,558	-				+0.2
4,356,822	+				+1.5
4,356,856	-				+0.8
4,356,871	+				+0.9
4,356,902	+				-2.0
4,356,903	-				+0.2
4,357,019	+				+1.4
4,357,041	-				-0.2
4,357,099	+				-0.2
4,357,124	+		ABI39_RS17215	0.10	+0.7
4,357,177	+		ABI39_RS17215	0.12	-0.2
4,357,177	+		ABI39_RS17215	0.12	+1.3
4,357,187	-		ABI39_RS17215	0.13	-0.9
4,357,290	-		ABI39_RS17215	0.17	+0.5
4,357,390	-		ABI39_RS17215	0.22	-0.8
4,357,405	+		ABI39_RS17215	0.22	-2.6
4,357,659	+		ABI39_RS17215	0.33	+1.6