Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS16715

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
4,243,953	-				-1.7
4,243,975	+				-1.7
4,244,005	+				-1.5
4,244,028	+				-2.2
4,244,055	-				+0.7
4,244,199	+		ABI39_RS16710	0.15	-1.6
4,244,338	+		ABI39_RS16710	0.40	-1.5
4,244,371	+		ABI39_RS16710	0.46	+1.0
4,244,420	-		ABI39_RS16710	0.54	-0.5
4,244,441	-		ABI39_RS16710	0.58	+0.2
4,244,559	+		ABI39_RS16710	0.79	-0.2
4,244,559	+		ABI39_RS16710	0.79	-1.7
4,244,583	-		ABI39_RS16710	0.83	-2.7
4,244,604	+		ABI39_RS16710	0.87	-1.2
4,244,605	-		ABI39_RS16710	0.87	+0.2
4,244,677	+				-2.0
4,244,677	+				-0.4
4,244,709	-				+1.5
4,244,760	+				-0.2
4,244,835	+				-1.6
4,244,839	+				+0.6
4,244,954	+				+0.6
4,244,955	-				-0.6
4,245,083	+		ABI39_RS16715	0.15	+0.0
4,245,086	+		ABI39_RS16715	0.15	+1.6
4,245,097	+		ABI39_RS16715	0.16	-3.4
4,245,113	+		ABI39_RS16715	0.17	-1.1
4,245,178	+		ABI39_RS16715	0.21	+3.0
4,245,191	-		ABI39_RS16715	0.22	+1.6
4,245,233	+		ABI39_RS16715	0.25	-1.5
4,245,275	+		ABI39_RS16715	0.28	+0.2
4,245,276	-		ABI39_RS16715	0.28	+0.1
4,245,311	-		ABI39_RS16715	0.30	+2.7
4,245,500	-		ABI39_RS16715	0.43	+1.1
4,245,559	-		ABI39_RS16715	0.47	-1.2
4,245,578	+		ABI39_RS16715	0.49	-0.7
4,245,579	-		ABI39_RS16715	0.49	+1.2
4,245,641	+		ABI39_RS16715	0.53	-0.3
4,245,789	+		ABI39_RS16715	0.63	+0.7
4,245,861	-		ABI39_RS16715	0.68	+0.3
4,245,885	-		ABI39_RS16715	0.70	+3.8
4,246,041	-		ABI39_RS16715	0.81	+2.0
4,246,064	+		ABI39_RS16715	0.82	+0.8
4,246,065	-		ABI39_RS16715	0.82	+1.6
4,246,081	-		ABI39_RS16715	0.83	+0.7
4,246,167	-		ABI39_RS16715	0.89	+1.5
4,246,215	+				-1.5
4,246,284	-				+1.2
4,246,324	-				+0.4
4,246,324	-				-0.2
4,246,344	-				+2.3
4,246,345	+				+0.8
4,246,345	+				-1.4
4,246,346	-				-1.0
4,246,389	+				-0.6
4,246,540	-				+0.7
4,246,783	-		ABI39_RS16720	0.25	+0.7
4,246,783	-		ABI39_RS16720	0.25	-0.7
4,246,820	-		ABI39_RS16720	0.28	+2.7
4,247,129	+		ABI39_RS16720	0.50	+1.5
4,247,129	+		ABI39_RS16720	0.50	+2.8
4,247,169	-		ABI39_RS16720	0.53	+2.5
4,247,202	+		ABI39_RS16720	0.56	-0.4
4,247,256	+		ABI39_RS16720	0.60	+1.1
4,247,292	+		ABI39_RS16720	0.62	+2.1
4,247,293	-		ABI39_RS16720	0.62	+4.1
4,247,309	-		ABI39_RS16720	0.64	+3.8