Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS13850

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
3,597,012	-		ABI39_RS13840	0.46	+0.3
3,597,017	+		ABI39_RS13840	0.47	-0.4
3,597,085	-		ABI39_RS13840	0.55	+0.2
3,597,280	-		ABI39_RS13840	0.80	-2.4
3,597,337	+		ABI39_RS13840	0.87	+0.8
3,597,337	+		ABI39_RS13840	0.87	-0.8
3,597,338	-		ABI39_RS13840	0.88	-0.3
3,597,338	-		ABI39_RS13840	0.88	-0.5
3,597,417	-				-0.2
3,597,514	+				-1.8
3,597,517	-				+0.4
3,597,534	+				+1.4
3,597,607	-				-0.6
3,597,692	+				-1.0
3,597,780	-		ABI39_RS13845	0.60	-2.4
3,597,843	-				+0.3
3,597,946	-				-4.2
3,598,087	-				-0.5
3,598,089	-				+0.1
3,598,090	+				-1.9
3,598,124	-				-0.6
3,598,129	-				-1.5
3,598,381	+				-0.7
3,598,442	+		ABI39_RS13850	0.10	+0.2
3,598,510	+		ABI39_RS13850	0.12	-0.5
3,598,510	+		ABI39_RS13850	0.12	-3.0
3,598,510	+		ABI39_RS13850	0.12	-0.6
3,598,610	-		ABI39_RS13850	0.14	-3.2
3,598,613	-		ABI39_RS13850	0.14	-1.8
3,598,617	+		ABI39_RS13850	0.14	-0.7
3,598,618	-		ABI39_RS13850	0.14	-1.4
3,598,639	+		ABI39_RS13850	0.15	-4.1
3,598,639	+		ABI39_RS13850	0.15	-0.2
3,598,639	+		ABI39_RS13850	0.15	+0.8
3,598,681	-		ABI39_RS13850	0.16	-2.9
3,598,725	+		ABI39_RS13850	0.17	+0.2
3,598,730	-		ABI39_RS13850	0.17	-0.5
3,598,794	-		ABI39_RS13850	0.18	-2.5
3,599,047	-		ABI39_RS13850	0.24	-1.7
3,599,178	-		ABI39_RS13850	0.27	-0.8
3,599,428	-		ABI39_RS13850	0.33	-2.0
3,599,619	+		ABI39_RS13850	0.37	+0.1
3,599,803	+		ABI39_RS13850	0.41	-1.0
3,599,890	+		ABI39_RS13850	0.43	-0.3
3,599,920	-		ABI39_RS13850	0.44	-3.3
3,599,939	-		ABI39_RS13850	0.44	-0.8
3,599,939	-		ABI39_RS13850	0.44	-2.9
3,599,958	-		ABI39_RS13850	0.45	-2.7
3,600,152	+		ABI39_RS13850	0.49	-1.8
3,600,206	+		ABI39_RS13850	0.50	+0.5
3,600,210	+		ABI39_RS13850	0.50	-1.2
3,600,211	-		ABI39_RS13850	0.50	-1.2
3,600,232	-		ABI39_RS13850	0.51	-1.8
3,600,236	-		ABI39_RS13850	0.51	-1.6
3,600,472	+		ABI39_RS13850	0.56	+0.7
3,600,475	-		ABI39_RS13850	0.56	-2.5
3,600,591	-		ABI39_RS13850	0.59	-2.5
3,600,725	-		ABI39_RS13850	0.62	-2.0
3,600,756	-		ABI39_RS13850	0.63	-1.8
3,600,811	+		ABI39_RS13850	0.64	+0.9
3,600,812	-		ABI39_RS13850	0.64	-1.8
3,600,814	-		ABI39_RS13850	0.64	-1.7
3,600,814	-		ABI39_RS13850	0.64	-2.7
3,600,816	+		ABI39_RS13850	0.64	+1.1
3,600,979	+		ABI39_RS13850	0.68	+0.3
3,601,048	+		ABI39_RS13850	0.69	+0.7
3,601,049	-		ABI39_RS13850	0.69	-2.1
3,601,081	-		ABI39_RS13850	0.70	-0.5
3,601,347	+		ABI39_RS13850	0.76	-2.4
3,601,435	+		ABI39_RS13850	0.78	-0.2
3,601,435	+		ABI39_RS13850	0.78	-1.5
3,601,600	+		ABI39_RS13850	0.82	-0.3
3,601,641	-		ABI39_RS13850	0.83	-2.7
3,601,641	-		ABI39_RS13850	0.83	-2.3
3,601,856	-		ABI39_RS13850	0.88	-0.5
3,601,863	+		ABI39_RS13850	0.88	-3.7
3,601,865	+		ABI39_RS13850	0.88	-1.8
3,601,954	+		ABI39_RS13850	0.90	-2.6
3,601,967	-				-3.0
3,601,968	+				-2.2
3,602,004	-				-1.5
3,602,128	-				-2.4
3,602,132	-				-2.4
3,602,269	+				-0.8
3,602,274	+				-1.9
3,602,274	+				-1.7
3,602,274	+				+0.4
3,602,398	+				-1.8
3,602,436	-				-2.1
3,602,441	+				-1.5
3,602,748	-		ABI39_RS13855	0.44	-0.2
3,602,749	+		ABI39_RS13855	0.45	-3.5
3,602,750	-		ABI39_RS13855	0.45	-0.2
3,602,807	+		ABI39_RS13855	0.53	-3.2
3,602,960	+		ABI39_RS13855	0.74	-1.7
3,602,975	+		ABI39_RS13855	0.76	-0.9
3,603,174	+				+0.2
3,603,228	+		ABI39_RS13860	0.12	-0.8
3,603,232	+		ABI39_RS13860	0.13	-2.2