Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS11075

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
2,963,894	+		ABI39_RS11070	0.51	-0.5
2,963,895	-		ABI39_RS11070	0.51	-2.8
2,963,895	-		ABI39_RS11070	0.51	+0.5
2,963,895	-		ABI39_RS11070	0.51	+1.2
2,963,896	+		ABI39_RS11070	0.51	+1.1
2,963,897	-		ABI39_RS11070	0.51	-1.4
2,963,897	-		ABI39_RS11070	0.51	-0.4
2,963,922	-		ABI39_RS11070	0.53	-1.9
2,963,945	-		ABI39_RS11070	0.54	+0.8
2,963,992	-		ABI39_RS11070	0.57	+0.0
2,963,992	-		ABI39_RS11070	0.57	-0.1
2,964,115	-		ABI39_RS11070	0.64	-4.5
2,964,221	-		ABI39_RS11070	0.70	-0.8
2,964,232	-		ABI39_RS11070	0.71	-1.9
2,964,261	+		ABI39_RS11070	0.72	-1.1
2,964,374	+		ABI39_RS11070	0.79	+0.9
2,964,375	-		ABI39_RS11070	0.79	+1.5
2,964,378	+		ABI39_RS11070	0.79	-0.6
2,964,431	+		ABI39_RS11070	0.82	+0.6
2,964,436	-		ABI39_RS11070	0.82	+2.2
2,964,557	+		ABI39_RS11070	0.89	-0.5
2,964,741	-				-0.7
2,964,789	-				-1.2
2,964,799	-				+0.4
2,964,875	-		ABI39_RS11075	0.14	+1.0
2,964,933	-		ABI39_RS11075	0.21	-0.7
2,964,985	-		ABI39_RS11075	0.27	+0.2
2,964,985	-		ABI39_RS11075	0.27	+0.1
2,965,087	-		ABI39_RS11075	0.40	-0.4
2,965,196	-		ABI39_RS11075	0.53	+0.9
2,965,333	+		ABI39_RS11075	0.70	+1.7
2,965,334	-		ABI39_RS11075	0.70	+3.4
2,965,461	+		ABI39_RS11075	0.85	-2.5
2,965,479	-		ABI39_RS11075	0.88	+0.9
2,965,507	-				-1.7
2,965,551	+				-0.4
2,965,560	+				-0.7
2,965,561	-				-0.3
2,965,630	+				+0.7
2,965,634	+				-1.3
2,965,634	+				+0.7
2,965,635	-				+0.2
2,965,659	+				+0.2
2,965,662	-				+0.1
2,965,689	+				+1.1
2,965,785	+		ABI39_RS11080	0.16	+0.4
2,965,793	-		ABI39_RS11080	0.17	+0.4
2,965,836	+		ABI39_RS11080	0.20	-0.7
2,965,838	+		ABI39_RS11080	0.20	+1.8
2,965,855	+		ABI39_RS11080	0.22	+1.0
2,965,860	+		ABI39_RS11080	0.22	-0.8
2,965,910	-		ABI39_RS11080	0.26	-0.7
2,965,910	-		ABI39_RS11080	0.26	+0.9
2,965,912	+		ABI39_RS11080	0.27	+0.6
2,965,912	+		ABI39_RS11080	0.27	-1.1
2,965,912	+		ABI39_RS11080	0.27	+1.1
2,965,913	-		ABI39_RS11080	0.27	-0.8
2,965,924	-		ABI39_RS11080	0.28	+0.9
2,965,924	-		ABI39_RS11080	0.28	+0.7
2,965,924	-		ABI39_RS11080	0.28	+0.9
2,965,934	-		ABI39_RS11080	0.28	+0.2
2,966,027	+		ABI39_RS11080	0.36	+0.7
2,966,038	+		ABI39_RS11080	0.37	+0.7
2,966,067	+		ABI39_RS11080	0.39	+0.1
2,966,106	-		ABI39_RS11080	0.43	+0.9
2,966,252	-		ABI39_RS11080	0.55	-1.3
2,966,269	+		ABI39_RS11080	0.56	+2.3
2,966,286	+		ABI39_RS11080	0.57	+1.2
2,966,305	-		ABI39_RS11080	0.59	+1.7
2,966,368	+		ABI39_RS11080	0.64	-0.7
2,966,369	-		ABI39_RS11080	0.64	-0.8
2,966,385	-		ABI39_RS11080	0.66	+0.4
2,966,429	+		ABI39_RS11080	0.69	+1.9
2,966,433	-		ABI39_RS11080	0.70	-1.7
2,966,472	+		ABI39_RS11080	0.73	+1.5
2,966,483	-		ABI39_RS11080	0.74	+0.4
2,966,514	-		ABI39_RS11080	0.76	-0.7
2,966,536	+		ABI39_RS11080	0.78	-1.4
2,966,558	-		ABI39_RS11080	0.80	-1.9