Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS06610

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABI39_RS06605 and ABI39_RS06610 are separated by 2 nucleotidesABI39_RS06610 and ABI39_RS06615 are separated by 171 nucleotides ABI39_RS06605: ABI39_RS06605 - tRNA 2-thiouridine(34) synthase MnmA, at 1,835,733 to 1,836,788 _RS06605 ABI39_RS06610: ABI39_RS06610 - virulence RhuM family protein, at 1,836,791 to 1,837,654 _RS06610 ABI39_RS06615: ABI39_RS06615 - DUF4981 domain-containing protein, at 1,837,826 to 1,841,155 _RS06615 Position (kb) 1836 1837 1838Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1835.890 kb on - strand, within ABI39_RS06605at 1836.082 kb on + strand, within ABI39_RS06605at 1836.170 kb on + strand, within ABI39_RS06605at 1836.418 kb on + strand, within ABI39_RS06605at 1836.418 kb on + strand, within ABI39_RS06605at 1836.530 kb on + strand, within ABI39_RS06605at 1836.533 kb on - strand, within ABI39_RS06605at 1836.640 kb on + strand, within ABI39_RS06605at 1836.640 kb on + strand, within ABI39_RS06605at 1836.888 kb on - strand, within ABI39_RS06610at 1836.888 kb on - strand, within ABI39_RS06610at 1836.888 kb on - strand, within ABI39_RS06610at 1836.903 kb on - strand, within ABI39_RS06610at 1836.904 kb on + strand, within ABI39_RS06610at 1836.941 kb on + strand, within ABI39_RS06610at 1836.942 kb on - strand, within ABI39_RS06610at 1836.949 kb on + strand, within ABI39_RS06610at 1837.015 kb on - strand, within ABI39_RS06610at 1837.015 kb on - strand, within ABI39_RS06610at 1837.028 kb on + strand, within ABI39_RS06610at 1837.078 kb on - strand, within ABI39_RS06610at 1837.313 kb on + strand, within ABI39_RS06610at 1837.499 kb on + strand, within ABI39_RS06610at 1837.507 kb on + strand, within ABI39_RS06610at 1837.507 kb on + strand, within ABI39_RS06610at 1837.545 kb on - strand, within ABI39_RS06610at 1837.545 kb on - strand, within ABI39_RS06610at 1837.716 kb on + strandat 1837.719 kb on - strandat 1837.761 kb on - strandat 1837.948 kb on + strandat 1837.967 kb on - strandat 1838.236 kb on - strand, within ABI39_RS06615at 1838.288 kb on - strand, within ABI39_RS06615at 1838.288 kb on - strand, within ABI39_RS06615at 1838.554 kb on - strand, within ABI39_RS06615at 1838.554 kb on - strand, within ABI39_RS06615at 1838.577 kb on + strand, within ABI39_RS06615at 1838.577 kb on + strand, within ABI39_RS06615at 1838.591 kb on + strand, within ABI39_RS06615

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
remove
1,835,890 - ABI39_RS06605 0.15 +1.4
1,836,082 + ABI39_RS06605 0.33 -0.1
1,836,170 + ABI39_RS06605 0.41 +1.1
1,836,418 + ABI39_RS06605 0.65 -2.4
1,836,418 + ABI39_RS06605 0.65 -0.0
1,836,530 + ABI39_RS06605 0.75 +0.1
1,836,533 - ABI39_RS06605 0.76 -1.0
1,836,640 + ABI39_RS06605 0.86 +0.2
1,836,640 + ABI39_RS06605 0.86 +1.0
1,836,888 - ABI39_RS06610 0.11 -1.5
1,836,888 - ABI39_RS06610 0.11 +0.6
1,836,888 - ABI39_RS06610 0.11 -0.0
1,836,903 - ABI39_RS06610 0.13 -2.2
1,836,904 + ABI39_RS06610 0.13 -1.6
1,836,941 + ABI39_RS06610 0.17 -0.2
1,836,942 - ABI39_RS06610 0.17 +0.8
1,836,949 + ABI39_RS06610 0.18 -0.4
1,837,015 - ABI39_RS06610 0.26 +0.5
1,837,015 - ABI39_RS06610 0.26 -1.2
1,837,028 + ABI39_RS06610 0.27 -0.5
1,837,078 - ABI39_RS06610 0.33 +1.0
1,837,313 + ABI39_RS06610 0.60 +1.1
1,837,499 + ABI39_RS06610 0.82 +1.6
1,837,507 + ABI39_RS06610 0.83 -0.8
1,837,507 + ABI39_RS06610 0.83 +1.7
1,837,545 - ABI39_RS06610 0.87 +1.9
1,837,545 - ABI39_RS06610 0.87 +0.1
1,837,716 + -0.1
1,837,719 - +0.6
1,837,761 - -0.6
1,837,948 + -0.0
1,837,967 - +0.4
1,838,236 - ABI39_RS06615 0.12 +0.6
1,838,288 - ABI39_RS06615 0.14 +1.2
1,838,288 - ABI39_RS06615 0.14 +1.8
1,838,554 - ABI39_RS06615 0.22 -4.2
1,838,554 - ABI39_RS06615 0.22 +2.2
1,838,577 + ABI39_RS06615 0.23 -1.9
1,838,577 + ABI39_RS06615 0.23 -0.5
1,838,591 + ABI39_RS06615 0.23 +1.7

Or see this region's nucleotide sequence