Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS05800

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
1,603,482	+				+0.0
1,603,504	+				-2.9
1,603,504	+				-0.3
1,603,511	-				+0.1
1,603,524	+				+0.7
1,603,538	+				+0.4
1,603,538	+				-1.0
1,603,539	-				+0.5
1,603,582	-				+1.2
1,603,709	-				+0.4
1,603,729	-				-2.4
1,603,755	-				-0.6
1,603,822	-				+0.7
1,603,875	+				+0.9
1,603,900	-		ABI39_RS05795	0.14	+0.2
1,603,902	+		ABI39_RS05795	0.14	+1.2
1,604,089	-		ABI39_RS05795	0.46	+0.8
1,604,123	-		ABI39_RS05795	0.52	+1.6
1,604,126	+		ABI39_RS05795	0.53	-2.9
1,604,156	+		ABI39_RS05795	0.58	-0.3
1,604,168	+		ABI39_RS05795	0.60	-0.0
1,604,170	+		ABI39_RS05795	0.60	+3.3
1,604,171	-		ABI39_RS05795	0.61	+1.2
1,604,171	-		ABI39_RS05795	0.61	-1.1
1,604,171	-		ABI39_RS05795	0.61	-0.2
1,604,173	-		ABI39_RS05795	0.61	-0.7
1,604,199	-		ABI39_RS05795	0.65	+0.3
1,604,248	-		ABI39_RS05795	0.74	+0.4
1,604,285	-		ABI39_RS05795	0.80	-0.0
1,604,313	+		ABI39_RS05795	0.85	-0.3
1,604,315	+		ABI39_RS05795	0.86	+1.1
1,604,315	+		ABI39_RS05795	0.86	+1.1
1,604,316	-		ABI39_RS05795	0.86	+0.1
1,604,383	+				-0.4
1,604,396	-				-0.3
1,604,425	+				+0.5
1,604,425	+				+2.0
1,604,426	-				+1.5
1,604,428	-				+1.9
1,604,443	-		ABI39_RS05800	0.13	+0.2
1,604,496	-		ABI39_RS05800	0.35	-0.2
1,604,496	-		ABI39_RS05800	0.35	-0.9
1,604,504	-		ABI39_RS05800	0.38	-1.2
1,604,505	+		ABI39_RS05800	0.38	-3.1
1,604,506	-		ABI39_RS05800	0.39	+0.4
1,604,570	-		ABI39_RS05800	0.65	-3.5
1,604,604	+		ABI39_RS05800	0.78	-1.1
1,604,650	+				-0.5
1,604,773	+				-1.1
1,604,783	-				+0.5
1,604,783	-				+1.4
1,604,787	-				-0.3
1,604,817	+				-0.6
1,604,876	-				-0.1
1,604,879	-				+0.7
1,604,922	-				+0.6
1,604,929	-				-2.6
1,604,949	+				-1.9
1,604,949	+				+1.2
1,604,955	+				+0.9
1,605,018	+				-1.8
1,605,062	+				+0.8
1,605,062	+				+0.8
1,605,099	-				-0.8
1,605,129	+				-0.6
1,605,141	-				-1.6
1,605,143	-				+1.0
1,605,220	+		ABI39_RS22975	0.35	+1.3
1,605,483	+		ABI39_RS05805	0.68	+1.5
1,605,546	-				+0.4
1,605,550	+				+0.8
1,605,554	-				+1.2
1,605,581	+		ABI39_RS22980	0.13	-0.2
1,605,618	+		ABI39_RS22980	0.35	+1.9
1,605,647	+		ABI39_RS22980	0.51	-0.8
1,605,647	+		ABI39_RS22980	0.51	-1.9