Strain Fitness in Phocaeicola dorei CL03T12C01 around ABI39_RS03195

Experiment: Amylopectin from Potato; autoclaved 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Amylopectin from Potato; autoclaved 2.5 mg/ml (C)
925,997	+		ABI39_RS03190	0.82	+1.0
926,000	+		ABI39_RS03190	0.82	-0.8
926,019	+		ABI39_RS03190	0.83	+1.3
926,156	-		ABI39_RS03190	0.86	-0.1
926,538	+				+1.8
926,563	-				-0.2
926,584	+				+1.1
926,665	+				+0.1
926,665	+				-0.1
926,665	+				+1.0
926,697	-				-1.7
926,815	+				+0.7
926,832	+				-1.4
926,833	-				-1.3
926,842	-				-0.3
926,905	-				-0.5
927,014	+				+0.5
927,296	-		ABI39_RS03195	0.12	+0.5
927,300	+		ABI39_RS03195	0.12	+1.1
927,301	-		ABI39_RS03195	0.12	-0.9
927,473	+		ABI39_RS03195	0.16	+0.5
927,603	-		ABI39_RS03195	0.19	+1.3
927,844	+		ABI39_RS03195	0.25	+0.6
927,845	-		ABI39_RS03195	0.25	-0.6
927,849	-		ABI39_RS03195	0.25	-0.4
927,980	-		ABI39_RS03195	0.28	+0.3
928,185	+		ABI39_RS03195	0.33	-0.7
928,248	-		ABI39_RS03195	0.34	-0.7
928,356	+		ABI39_RS03195	0.37	-0.4
928,363	+		ABI39_RS03195	0.37	-0.1
928,466	+		ABI39_RS03195	0.40	+0.5
928,568	+		ABI39_RS03195	0.42	+0.4
928,569	-		ABI39_RS03195	0.42	-4.2
928,626	+		ABI39_RS03195	0.43	-0.3
928,627	-		ABI39_RS03195	0.43	-0.2
928,765	-		ABI39_RS03195	0.47	-0.5
928,772	+		ABI39_RS03195	0.47	+0.2
928,773	-		ABI39_RS03195	0.47	-0.6
928,782	-		ABI39_RS03195	0.47	-0.0
928,910	+		ABI39_RS03195	0.50	+1.4
928,911	-		ABI39_RS03195	0.50	-1.9
929,098	+		ABI39_RS03195	0.55	-3.3
929,105	-		ABI39_RS03195	0.55	-0.2
929,150	+		ABI39_RS03195	0.56	+1.0
929,245	-		ABI39_RS03195	0.58	+0.9
929,308	+		ABI39_RS03195	0.60	-2.0
929,312	+		ABI39_RS03195	0.60	-0.5
929,522	-		ABI39_RS03195	0.65	-0.2
929,556	-		ABI39_RS03195	0.66	-1.4
929,755	-		ABI39_RS03195	0.70	-1.1
930,369	-		ABI39_RS03195	0.85	-0.8
930,402	+		ABI39_RS03195	0.86	-0.7
930,402	+		ABI39_RS03195	0.86	-1.0
930,406	+		ABI39_RS03195	0.86	+1.4
930,406	+		ABI39_RS03195	0.86	+1.0
930,407	-		ABI39_RS03195	0.86	-1.6
930,407	-		ABI39_RS03195	0.86	-1.8
930,524	+		ABI39_RS03195	0.89	-0.1
930,525	-		ABI39_RS03195	0.89	+0.2
930,564	-		ABI39_RS03195	0.90	-0.7
930,640	-				-0.1
930,652	-				+0.4
930,659	+				+0.9
930,661	+				+0.8
930,828	-				+1.3
930,950	+				+0.7
930,975	-				+1.0
930,978	-				-0.1
930,986	+				-1.3
931,001	-				-0.3
931,010	+				-1.1
931,023	-				-0.6
931,025	-				+0.1
931,125	-		ABI39_RS03200	0.52	-0.2
931,192	-		ABI39_RS03200	0.84	+2.3
931,192	-		ABI39_RS03200	0.84	-1.7
931,300	-				+0.7
931,302	+				-1.4
931,302	+				+1.5
931,303	-				+1.4
931,303	-				+0.6
931,305	+				-0.1
931,307	+				+1.0
931,416	+				+0.4
931,434	+				+1.4
931,523	+				-0.0
931,523	+				+0.2
931,690	+		ABI39_RS03205	0.24	+0.9
931,696	+		ABI39_RS03205	0.25	-0.3
931,932	+		ABI39_RS03205	0.48	-4.0
931,937	+		ABI39_RS03205	0.48	-0.3
931,961	-		ABI39_RS03205	0.51	-0.8
931,961	-		ABI39_RS03205	0.51	-0.9
931,966	-		ABI39_RS03205	0.51	-2.5