Strain Fitness in Escherichia coli ECRC101 around MCAODC_28410

Experiment: WM_RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttnpB and insE overlap by 4 nucleotidesinsE and rpmE2-1 are separated by 260 nucleotidesrpmE2-1 and MCAODC_28410 overlap by 1 nucleotidesMCAODC_28410 and MCAODC_28415 are separated by 69 nucleotides MCAODC_28395: tnpB - IS66 family insertion sequence element accessory protein TnpB, at 2,434,297 to 2,434,644 tnpB MCAODC_28400: insE - Transposase InsE and inactivated derivatives, at 2,434,641 to 2,435,021 insE MCAODC_28405: rpmE2-1 - type B 50S ribosomal protein L31, at 2,435,282 to 2,435,548 rpmE2-1 MCAODC_28410: MCAODC_28410 - 50S ribosomal protein L36 2, at 2,435,548 to 2,435,688 _28410 MCAODC_28415: MCAODC_28415 - Protein, at 2,435,758 to 2,435,949 _28415 Position (kb) 2435 2436Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2435.105 kb on + strandat 2435.195 kb on + strandat 2435.315 kb on - strand, within rpmE2-1at 2435.315 kb on - strand, within rpmE2-1at 2435.315 kb on - strand, within rpmE2-1at 2435.315 kb on - strand, within rpmE2-1at 2435.315 kb on - strand, within rpmE2-1at 2435.349 kb on - strand, within rpmE2-1at 2435.349 kb on - strand, within rpmE2-1at 2435.349 kb on - strand, within rpmE2-1at 2435.354 kb on - strand, within rpmE2-1at 2435.408 kb on + strand, within rpmE2-1at 2435.408 kb on + strand, within rpmE2-1at 2435.409 kb on - strand, within rpmE2-1at 2435.415 kb on - strand, within rpmE2-1at 2435.418 kb on + strand, within rpmE2-1at 2435.419 kb on - strand, within rpmE2-1at 2435.419 kb on - strand, within rpmE2-1at 2435.453 kb on + strand, within rpmE2-1at 2435.454 kb on - strand, within rpmE2-1at 2435.454 kb on - strand, within rpmE2-1at 2435.456 kb on - strand, within rpmE2-1at 2435.559 kb on + strandat 2435.560 kb on - strandat 2435.624 kb on + strand, within MCAODC_28410at 2435.624 kb on + strand, within MCAODC_28410at 2435.625 kb on - strand, within MCAODC_28410at 2435.625 kb on - strand, within MCAODC_28410at 2435.626 kb on + strand, within MCAODC_28410at 2435.626 kb on + strand, within MCAODC_28410at 2435.626 kb on + strand, within MCAODC_28410at 2435.627 kb on - strand, within MCAODC_28410at 2435.627 kb on - strand, within MCAODC_28410at 2435.627 kb on - strand, within MCAODC_28410at 2435.644 kb on - strand, within MCAODC_28410at 2435.712 kb on + strandat 2435.712 kb on + strandat 2435.712 kb on + strandat 2435.712 kb on + strandat 2435.752 kb on + strandat 2435.752 kb on + strandat 2435.756 kb on + strandat 2435.788 kb on - strand, within MCAODC_28415at 2435.788 kb on - strand, within MCAODC_28415at 2435.788 kb on - strand, within MCAODC_28415at 2435.788 kb on - strand, within MCAODC_28415at 2435.788 kb on - strand, within MCAODC_28415at 2435.804 kb on - strand, within MCAODC_28415at 2435.804 kb on - strand, within MCAODC_28415at 2435.834 kb on + strand, within MCAODC_28415at 2435.842 kb on + strand, within MCAODC_28415at 2435.847 kb on + strand, within MCAODC_28415at 2435.848 kb on - strand, within MCAODC_28415at 2435.848 kb on - strand, within MCAODC_28415at 2435.880 kb on - strand, within MCAODC_28415at 2435.901 kb on + strand, within MCAODC_28415at 2435.902 kb on - strand, within MCAODC_28415at 2435.951 kb on + strandat 2435.952 kb on - strandat 2435.973 kb on + strandat 2435.973 kb on + strandat 2435.974 kb on - strandat 2435.983 kb on - strandat 2435.994 kb on + strandat 2435.994 kb on + strandat 2436.003 kb on - strandat 2436.003 kb on - strandat 2436.071 kb on + strandat 2436.071 kb on + strandat 2436.071 kb on + strandat 2436.174 kb on - strandat 2436.199 kb on - strandat 2436.202 kb on + strandat 2436.267 kb on - strandat 2436.419 kb on + strandat 2436.423 kb on + strandat 2436.429 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_RB68
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2,435,105 + -1.4
2,435,195 + +0.3
2,435,315 - rpmE2-1 MCAODC_28405 0.12 +0.9
2,435,315 - rpmE2-1 MCAODC_28405 0.12 -0.1
2,435,315 - rpmE2-1 MCAODC_28405 0.12 -0.6
2,435,315 - rpmE2-1 MCAODC_28405 0.12 -0.3
2,435,315 - rpmE2-1 MCAODC_28405 0.12 -0.5
2,435,349 - rpmE2-1 MCAODC_28405 0.25 -0.0
2,435,349 - rpmE2-1 MCAODC_28405 0.25 -0.4
2,435,349 - rpmE2-1 MCAODC_28405 0.25 +0.1
2,435,354 - rpmE2-1 MCAODC_28405 0.27 +0.8
2,435,408 + rpmE2-1 MCAODC_28405 0.47 -0.1
2,435,408 + rpmE2-1 MCAODC_28405 0.47 -0.2
2,435,409 - rpmE2-1 MCAODC_28405 0.48 -0.9
2,435,415 - rpmE2-1 MCAODC_28405 0.50 +0.0
2,435,418 + rpmE2-1 MCAODC_28405 0.51 +2.3
2,435,419 - rpmE2-1 MCAODC_28405 0.51 +0.3
2,435,419 - rpmE2-1 MCAODC_28405 0.51 -0.6
2,435,453 + rpmE2-1 MCAODC_28405 0.64 +0.0
2,435,454 - rpmE2-1 MCAODC_28405 0.64 +0.5
2,435,454 - rpmE2-1 MCAODC_28405 0.64 +0.6
2,435,456 - rpmE2-1 MCAODC_28405 0.65 -0.3
2,435,559 + -1.0
2,435,560 - +0.0
2,435,624 + MCAODC_28410 0.54 +0.8
2,435,624 + MCAODC_28410 0.54 +0.3
2,435,625 - MCAODC_28410 0.55 +0.2
2,435,625 - MCAODC_28410 0.55 -0.3
2,435,626 + MCAODC_28410 0.55 +1.4
2,435,626 + MCAODC_28410 0.55 +1.0
2,435,626 + MCAODC_28410 0.55 -1.7
2,435,627 - MCAODC_28410 0.56 +0.9
2,435,627 - MCAODC_28410 0.56 -0.1
2,435,627 - MCAODC_28410 0.56 -0.2
2,435,644 - MCAODC_28410 0.68 -1.0
2,435,712 + +0.7
2,435,712 + +0.0
2,435,712 + +0.3
2,435,712 + -0.1
2,435,752 + +0.2
2,435,752 + -0.0
2,435,756 + +0.4
2,435,788 - MCAODC_28415 0.16 -2.1
2,435,788 - MCAODC_28415 0.16 -0.2
2,435,788 - MCAODC_28415 0.16 +0.8
2,435,788 - MCAODC_28415 0.16 -0.1
2,435,788 - MCAODC_28415 0.16 -0.6
2,435,804 - MCAODC_28415 0.24 -0.0
2,435,804 - MCAODC_28415 0.24 +0.8
2,435,834 + MCAODC_28415 0.40 -0.0
2,435,842 + MCAODC_28415 0.44 -0.1
2,435,847 + MCAODC_28415 0.46 -0.0
2,435,848 - MCAODC_28415 0.47 -0.2
2,435,848 - MCAODC_28415 0.47 -0.3
2,435,880 - MCAODC_28415 0.64 +0.8
2,435,901 + MCAODC_28415 0.74 +0.4
2,435,902 - MCAODC_28415 0.75 +0.4
2,435,951 + -2.8
2,435,952 - +0.4
2,435,973 + -0.2
2,435,973 + -0.6
2,435,974 - -0.5
2,435,983 - -0.4
2,435,994 + +0.2
2,435,994 + -2.1
2,436,003 - -0.3
2,436,003 - +1.0
2,436,071 + -0.3
2,436,071 + -0.1
2,436,071 + +0.2
2,436,174 - +0.2
2,436,199 - -0.5
2,436,202 + -1.0
2,436,267 - -0.5
2,436,419 + -0.4
2,436,423 + +0.4
2,436,429 - +0.4

Or see this region's nucleotide sequence