Strain Fitness in Escherichia coli ECRC101 around MCAODC_26260

Experiment: WM_RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_26260 and rhsA overlap by 4 nucleotides MCAODC_26260: MCAODC_26260 - Uncharacterized protein YbfC, at 1,968,021 to 1,968,590 _26260 MCAODC_26265: rhsA - RHS element protein, at 1,968,587 to 1,972,786 rhsA Position (kb) 1968 1969Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1967.046 kb on + strandat 1967.136 kb on + strandat 1967.216 kb on + strandat 1967.267 kb on + strandat 1967.341 kb on - strandat 1967.344 kb on - strandat 1967.717 kb on - strandat 1967.731 kb on + strandat 1967.857 kb on + strandat 1967.858 kb on - strandat 1967.858 kb on - strandat 1967.908 kb on - strandat 1967.908 kb on - strandat 1968.270 kb on + strand, within MCAODC_26260at 1968.453 kb on + strand, within MCAODC_26260at 1968.716 kb on - strandat 1968.716 kb on - strandat 1968.718 kb on - strandat 1968.763 kb on - strandat 1968.782 kb on - strandat 1968.852 kb on + strandat 1968.853 kb on - strandat 1968.934 kb on - strandat 1968.944 kb on + strandat 1968.944 kb on + strandat 1968.945 kb on - strandat 1968.956 kb on + strandat 1969.025 kb on + strand, within rhsAat 1969.026 kb on - strand, within rhsAat 1969.061 kb on + strand, within rhsAat 1969.062 kb on - strand, within rhsAat 1969.062 kb on - strand, within rhsAat 1969.063 kb on + strand, within rhsAat 1969.064 kb on - strand, within rhsAat 1969.064 kb on - strand, within rhsAat 1969.065 kb on + strand, within rhsAat 1969.066 kb on - strand, within rhsAat 1969.066 kb on - strand, within rhsAat 1969.066 kb on - strand, within rhsAat 1969.066 kb on - strand, within rhsA

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_RB68
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1,967,046 + -2.4
1,967,136 + +0.4
1,967,216 + -0.4
1,967,267 + +0.6
1,967,341 - +0.0
1,967,344 - +0.2
1,967,717 - +1.5
1,967,731 + +0.5
1,967,857 + -1.6
1,967,858 - -0.2
1,967,858 - +2.1
1,967,908 - +0.7
1,967,908 - -2.1
1,968,270 + MCAODC_26260 0.44 -3.2
1,968,453 + MCAODC_26260 0.76 +0.2
1,968,716 - +1.0
1,968,716 - +1.6
1,968,718 - +0.6
1,968,763 - +0.9
1,968,782 - -0.1
1,968,852 + -0.0
1,968,853 - +0.5
1,968,934 - +0.1
1,968,944 + +1.5
1,968,944 + +0.5
1,968,945 - +0.2
1,968,956 + -0.4
1,969,025 + rhsA MCAODC_26265 0.10 -0.2
1,969,026 - rhsA MCAODC_26265 0.10 +1.0
1,969,061 + rhsA MCAODC_26265 0.11 +1.5
1,969,062 - rhsA MCAODC_26265 0.11 -0.8
1,969,062 - rhsA MCAODC_26265 0.11 -1.0
1,969,063 + rhsA MCAODC_26265 0.11 -1.1
1,969,064 - rhsA MCAODC_26265 0.11 -0.1
1,969,064 - rhsA MCAODC_26265 0.11 +2.5
1,969,065 + rhsA MCAODC_26265 0.11 +1.0
1,969,066 - rhsA MCAODC_26265 0.11 -0.0
1,969,066 - rhsA MCAODC_26265 0.11 +0.2
1,969,066 - rhsA MCAODC_26265 0.11 +0.7
1,969,066 - rhsA MCAODC_26265 0.11 +0.1

Or see this region's nucleotide sequence