Strain Fitness in Escherichia coli ECRC101 around MCAODC_25810

Experiment: WM_RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_25805 and MCAODC_25810 are separated by 211 nucleotidesMCAODC_25810 and ninG overlap by 4 nucleotides MCAODC_25805: MCAODC_25805 - DUF2219 domain-containing protein, at 1,881,854 to 1,882,813 _25805 MCAODC_25810: MCAODC_25810 - Serine/threonine-protein phosphatase, at 1,883,025 to 1,883,690 _25810 MCAODC_25815: ninG - Protein ninG, at 1,883,687 to 1,884,307 ninG Position (kb) 1883 1884Strain fitness (log2 ratio) -2 -1 0 1at 1882.042 kb on + strand, within MCAODC_25805at 1882.114 kb on + strand, within MCAODC_25805at 1882.117 kb on + strand, within MCAODC_25805at 1882.163 kb on + strand, within MCAODC_25805at 1882.164 kb on - strand, within MCAODC_25805at 1882.221 kb on + strand, within MCAODC_25805at 1882.233 kb on + strand, within MCAODC_25805at 1882.233 kb on + strand, within MCAODC_25805at 1882.233 kb on + strand, within MCAODC_25805at 1882.277 kb on - strand, within MCAODC_25805at 1882.451 kb on + strand, within MCAODC_25805at 1882.719 kb on + strandat 1882.731 kb on + strandat 1882.952 kb on + strandat 1884.280 kb on + strandat 1884.332 kb on + strandat 1884.333 kb on - strandat 1884.448 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_RB68
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1,882,042 + MCAODC_25805 0.20 +0.2
1,882,114 + MCAODC_25805 0.27 +1.6
1,882,117 + MCAODC_25805 0.27 -1.0
1,882,163 + MCAODC_25805 0.32 -0.1
1,882,164 - MCAODC_25805 0.32 -1.5
1,882,221 + MCAODC_25805 0.38 -0.0
1,882,233 + MCAODC_25805 0.39 +0.1
1,882,233 + MCAODC_25805 0.39 +0.1
1,882,233 + MCAODC_25805 0.39 -0.2
1,882,277 - MCAODC_25805 0.44 +0.6
1,882,451 + MCAODC_25805 0.62 -0.4
1,882,719 + +0.7
1,882,731 + -1.3
1,882,952 + -2.2
1,884,280 + -0.5
1,884,332 + -1.4
1,884,333 - -0.9
1,884,448 + +0.5

Or see this region's nucleotide sequence