Experiment: WM_RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt infA and Ser_trna are separated by 253 nucleotides Ser_trna and clpA are separated by 345 nucleotides clpA and clpS are separated by 30 nucleotides clpS and yljB are separated by 98 nucleotides yljB and cspD are separated by 149 nucleotides cspD and macB are separated by 72 nucleotides
MCAODC_24990: infA - translation initiation factor IF-1, at 1,723,192 to 1,723,410
infA
MCAODC_24995: Ser_trna - tRNA-Ser(gga), at 1,723,664 to 1,723,751
_trna
MCAODC_25000: clpA - ATP-dependent Clp protease ATP-binding subunit ClpA, at 1,724,097 to 1,726,373
clpA
MCAODC_25005: clpS - ATP-dependent Clp protease adapter ClpS, at 1,726,404 to 1,726,724
clpS
MCAODC_25010: yljB - Protein YljB, at 1,726,823 to 1,726,897
yljB
MCAODC_25015: cspD - cold shock-like protein CspD, at 1,727,047 to 1,727,271
cspD
MCAODC_25020: macB - macrolide ABC transporter ATP-binding protein/permease MacB, at 1,727,344 to 1,729,290
macB
Position (kb)
1724
1725
1726
1727 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1723.448 kb on + strand at 1723.448 kb on + strand at 1723.474 kb on + strand at 1723.496 kb on - strand at 1723.496 kb on - strand at 1723.535 kb on + strand at 1723.536 kb on - strand at 1723.536 kb on - strand at 1723.536 kb on - strand at 1723.536 kb on - strand at 1723.537 kb on + strand at 1723.537 kb on + strand at 1723.554 kb on - strand at 1723.582 kb on - strand at 1723.615 kb on + strand at 1723.617 kb on + strand at 1723.617 kb on + strand at 1723.617 kb on + strand at 1723.720 kb on + strand, within Ser_trna at 1723.841 kb on - strand at 1723.841 kb on - strand at 1723.846 kb on - strand at 1723.846 kb on - strand at 1723.953 kb on + strand at 1723.977 kb on + strand at 1724.034 kb on + strand at 1724.039 kb on - strand at 1724.082 kb on + strand at 1724.083 kb on - strand at 1724.098 kb on + strand at 1724.143 kb on + strand at 1724.144 kb on - strand at 1724.385 kb on - strand, within clpA at 1724.385 kb on - strand, within clpA at 1724.385 kb on - strand, within clpA at 1724.432 kb on + strand, within clpA at 1724.432 kb on + strand, within clpA at 1724.433 kb on - strand, within clpA at 1724.433 kb on - strand, within clpA at 1724.648 kb on + strand, within clpA at 1724.802 kb on - strand, within clpA at 1724.803 kb on + strand, within clpA at 1724.803 kb on + strand, within clpA at 1724.804 kb on - strand, within clpA at 1724.804 kb on - strand, within clpA at 1724.814 kb on - strand, within clpA at 1724.932 kb on - strand, within clpA at 1724.932 kb on - strand, within clpA at 1724.932 kb on - strand, within clpA at 1724.951 kb on + strand, within clpA at 1724.951 kb on + strand, within clpA at 1724.982 kb on - strand, within clpA at 1725.212 kb on - strand, within clpA at 1725.254 kb on + strand, within clpA at 1725.281 kb on - strand, within clpA at 1725.281 kb on - strand, within clpA at 1725.281 kb on - strand, within clpA at 1725.339 kb on - strand, within clpA at 1725.539 kb on + strand, within clpA at 1725.539 kb on + strand, within clpA at 1725.540 kb on - strand, within clpA at 1725.540 kb on - strand, within clpA at 1725.573 kb on - strand, within clpA at 1725.869 kb on + strand, within clpA at 1725.869 kb on + strand, within clpA at 1725.870 kb on - strand, within clpA at 1725.945 kb on - strand, within clpA at 1725.963 kb on - strand, within clpA at 1725.999 kb on - strand, within clpA at 1726.009 kb on + strand, within clpA at 1726.010 kb on - strand, within clpA at 1726.010 kb on - strand, within clpA at 1726.114 kb on - strand, within clpA at 1726.191 kb on - strand at 1726.302 kb on - strand at 1726.345 kb on - strand at 1726.345 kb on - strand at 1726.374 kb on - strand at 1726.394 kb on - strand at 1726.417 kb on - strand at 1726.454 kb on - strand, within clpS at 1726.561 kb on - strand, within clpS at 1726.561 kb on - strand, within clpS at 1726.561 kb on - strand, within clpS at 1726.567 kb on + strand, within clpS at 1726.568 kb on - strand, within clpS at 1726.568 kb on - strand, within clpS at 1726.568 kb on - strand, within clpS at 1726.615 kb on + strand, within clpS at 1726.640 kb on + strand, within clpS at 1726.641 kb on - strand, within clpS at 1726.642 kb on + strand, within clpS at 1726.642 kb on + strand, within clpS at 1726.642 kb on + strand, within clpS at 1726.643 kb on - strand, within clpS at 1726.643 kb on - strand, within clpS at 1726.643 kb on - strand, within clpS at 1726.643 kb on - strand, within clpS at 1726.643 kb on - strand, within clpS at 1726.646 kb on + strand, within clpS at 1726.646 kb on + strand, within clpS at 1726.646 kb on + strand, within clpS at 1726.646 kb on + strand, within clpS at 1726.646 kb on + strand, within clpS at 1726.646 kb on + strand, within clpS at 1726.646 kb on + strand, within clpS at 1726.646 kb on + strand, within clpS at 1726.646 kb on + strand, within clpS at 1726.647 kb on - strand, within clpS at 1726.647 kb on - strand, within clpS at 1726.647 kb on - strand, within clpS at 1726.647 kb on - strand, within clpS at 1726.647 kb on - strand, within clpS at 1726.647 kb on - strand, within clpS at 1726.647 kb on - strand, within clpS at 1726.647 kb on - strand, within clpS at 1726.732 kb on + strand at 1726.785 kb on - strand at 1726.817 kb on + strand at 1726.817 kb on + strand at 1726.818 kb on - strand at 1726.818 kb on - strand at 1726.818 kb on - strand at 1726.818 kb on - strand at 1726.818 kb on - strand at 1726.818 kb on - strand at 1726.821 kb on + strand at 1726.822 kb on - strand at 1726.822 kb on - strand at 1726.822 kb on - strand at 1726.828 kb on + strand at 1726.898 kb on - strand at 1727.014 kb on + strand at 1727.014 kb on + strand at 1727.014 kb on + strand at 1727.014 kb on + strand at 1727.014 kb on + strand at 1727.014 kb on + strand at 1727.014 kb on + strand at 1727.020 kb on + strand at 1727.064 kb on + strand at 1727.064 kb on + strand at 1727.064 kb on + strand at 1727.065 kb on - strand at 1727.065 kb on - strand at 1727.065 kb on - strand at 1727.161 kb on + strand, within cspD at 1727.171 kb on + strand, within cspD at 1727.171 kb on + strand, within cspD at 1727.235 kb on + strand, within cspD at 1727.236 kb on - strand, within cspD at 1727.253 kb on - strand at 1727.253 kb on - strand at 1727.269 kb on + strand at 1727.269 kb on + strand at 1727.269 kb on + strand at 1727.269 kb on + strand at 1727.269 kb on + strand at 1727.269 kb on + strand at 1727.270 kb on - strand at 1727.270 kb on - strand at 1727.290 kb on + strand at 1727.290 kb on + strand at 1727.290 kb on + strand at 1727.290 kb on + strand at 1727.291 kb on - strand at 1727.291 kb on - strand at 1727.297 kb on + strand at 1727.297 kb on + strand at 1727.297 kb on + strand at 1727.297 kb on + strand at 1727.298 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_RB68 remove 1,723,448 + +0.3 1,723,448 + -0.4 1,723,474 + +0.9 1,723,496 - +0.1 1,723,496 - -0.1 1,723,535 + -1.9 1,723,536 - -2.8 1,723,536 - +0.4 1,723,536 - -0.0 1,723,536 - -0.8 1,723,537 + +0.5 1,723,537 + -1.9 1,723,554 - +0.9 1,723,582 - -0.1 1,723,615 + +0.8 1,723,617 + +0.1 1,723,617 + -1.9 1,723,617 + -0.1 1,723,720 + Ser_trna MCAODC_24995 0.64 +0.5 1,723,841 - -0.1 1,723,841 - +1.0 1,723,846 - -1.1 1,723,846 - -0.7 1,723,953 + +0.8 1,723,977 + -0.5 1,724,034 + -1.5 1,724,039 - -0.5 1,724,082 + -1.2 1,724,083 - +0.5 1,724,098 + -0.3 1,724,143 + -1.2 1,724,144 - -2.1 1,724,385 - clpA MCAODC_25000 0.13 +0.4 1,724,385 - clpA MCAODC_25000 0.13 +0.2 1,724,385 - clpA MCAODC_25000 0.13 +0.4 1,724,432 + clpA MCAODC_25000 0.15 +0.5 1,724,432 + clpA MCAODC_25000 0.15 -0.3 1,724,433 - clpA MCAODC_25000 0.15 -0.1 1,724,433 - clpA MCAODC_25000 0.15 -0.4 1,724,648 + clpA MCAODC_25000 0.24 -1.1 1,724,802 - clpA MCAODC_25000 0.31 +0.6 1,724,803 + clpA MCAODC_25000 0.31 -0.3 1,724,803 + clpA MCAODC_25000 0.31 +0.8 1,724,804 - clpA MCAODC_25000 0.31 -0.1 1,724,804 - clpA MCAODC_25000 0.31 +1.7 1,724,814 - clpA MCAODC_25000 0.31 -0.1 1,724,932 - clpA MCAODC_25000 0.37 -0.3 1,724,932 - clpA MCAODC_25000 0.37 -0.0 1,724,932 - clpA MCAODC_25000 0.37 -0.3 1,724,951 + clpA MCAODC_25000 0.38 -0.1 1,724,951 + clpA MCAODC_25000 0.38 -1.6 1,724,982 - clpA MCAODC_25000 0.39 -1.7 1,725,212 - clpA MCAODC_25000 0.49 -0.4 1,725,254 + clpA MCAODC_25000 0.51 -0.1 1,725,281 - clpA MCAODC_25000 0.52 -0.3 1,725,281 - clpA MCAODC_25000 0.52 +0.1 1,725,281 - clpA MCAODC_25000 0.52 -1.2 1,725,339 - clpA MCAODC_25000 0.55 -0.6 1,725,539 + clpA MCAODC_25000 0.63 -0.2 1,725,539 + clpA MCAODC_25000 0.63 -2.1 1,725,540 - clpA MCAODC_25000 0.63 -0.6 1,725,540 - clpA MCAODC_25000 0.63 -0.8 1,725,573 - clpA MCAODC_25000 0.65 -2.4 1,725,869 + clpA MCAODC_25000 0.78 +0.7 1,725,869 + clpA MCAODC_25000 0.78 -2.1 1,725,870 - clpA MCAODC_25000 0.78 -0.4 1,725,945 - clpA MCAODC_25000 0.81 -0.3 1,725,963 - clpA MCAODC_25000 0.82 +0.1 1,725,999 - clpA MCAODC_25000 0.84 +0.0 1,726,009 + clpA MCAODC_25000 0.84 +1.2 1,726,010 - clpA MCAODC_25000 0.84 +0.7 1,726,010 - clpA MCAODC_25000 0.84 -0.5 1,726,114 - clpA MCAODC_25000 0.89 -1.5 1,726,191 - -1.4 1,726,302 - -0.4 1,726,345 - -0.3 1,726,345 - -0.8 1,726,374 - +2.4 1,726,394 - +0.8 1,726,417 - +0.7 1,726,454 - clpS MCAODC_25005 0.16 +1.0 1,726,561 - clpS MCAODC_25005 0.49 -0.1 1,726,561 - clpS MCAODC_25005 0.49 -0.2 1,726,561 - clpS MCAODC_25005 0.49 -2.4 1,726,567 + clpS MCAODC_25005 0.51 +1.2 1,726,568 - clpS MCAODC_25005 0.51 +0.6 1,726,568 - clpS MCAODC_25005 0.51 +0.3 1,726,568 - clpS MCAODC_25005 0.51 -1.4 1,726,615 + clpS MCAODC_25005 0.66 +1.2 1,726,640 + clpS MCAODC_25005 0.74 +1.8 1,726,641 - clpS MCAODC_25005 0.74 +0.4 1,726,642 + clpS MCAODC_25005 0.74 +1.2 1,726,642 + clpS MCAODC_25005 0.74 -1.4 1,726,642 + clpS MCAODC_25005 0.74 +1.1 1,726,643 - clpS MCAODC_25005 0.74 -0.1 1,726,643 - clpS MCAODC_25005 0.74 -1.6 1,726,643 - clpS MCAODC_25005 0.74 +0.2 1,726,643 - clpS MCAODC_25005 0.74 +0.2 1,726,643 - clpS MCAODC_25005 0.74 -0.3 1,726,646 + clpS MCAODC_25005 0.75 +0.0 1,726,646 + clpS MCAODC_25005 0.75 +0.3 1,726,646 + clpS MCAODC_25005 0.75 -1.6 1,726,646 + clpS MCAODC_25005 0.75 +1.1 1,726,646 + clpS MCAODC_25005 0.75 +1.2 1,726,646 + clpS MCAODC_25005 0.75 +2.6 1,726,646 + clpS MCAODC_25005 0.75 +0.2 1,726,646 + clpS MCAODC_25005 0.75 +0.8 1,726,646 + clpS MCAODC_25005 0.75 +1.4 1,726,647 - clpS MCAODC_25005 0.76 +0.5 1,726,647 - clpS MCAODC_25005 0.76 +0.0 1,726,647 - clpS MCAODC_25005 0.76 +0.3 1,726,647 - clpS MCAODC_25005 0.76 -1.5 1,726,647 - clpS MCAODC_25005 0.76 -0.8 1,726,647 - clpS MCAODC_25005 0.76 -0.0 1,726,647 - clpS MCAODC_25005 0.76 +0.4 1,726,647 - clpS MCAODC_25005 0.76 +0.5 1,726,732 + +0.4 1,726,785 - +0.0 1,726,817 + -0.6 1,726,817 + +0.1 1,726,818 - +0.9 1,726,818 - -0.9 1,726,818 - -0.7 1,726,818 - -0.3 1,726,818 - +1.6 1,726,818 - +0.6 1,726,821 + +0.5 1,726,822 - -0.0 1,726,822 - -0.8 1,726,822 - +0.3 1,726,828 + -0.4 1,726,898 - +0.7 1,727,014 + +0.7 1,727,014 + +0.0 1,727,014 + +0.8 1,727,014 + +0.2 1,727,014 + -0.6 1,727,014 + +0.6 1,727,014 + +0.3 1,727,020 + -0.3 1,727,064 + -1.2 1,727,064 + -1.0 1,727,064 + -0.3 1,727,065 - +1.0 1,727,065 - +0.3 1,727,065 - +0.7 1,727,161 + cspD MCAODC_25015 0.51 +0.1 1,727,171 + cspD MCAODC_25015 0.55 +0.5 1,727,171 + cspD MCAODC_25015 0.55 +0.4 1,727,235 + cspD MCAODC_25015 0.84 -2.4 1,727,236 - cspD MCAODC_25015 0.84 -0.5 1,727,253 - -1.0 1,727,253 - -0.5 1,727,269 + -3.5 1,727,269 + +0.7 1,727,269 + +0.8 1,727,269 + -1.5 1,727,269 + -0.2 1,727,269 + -0.3 1,727,270 - +0.7 1,727,270 - +0.5 1,727,290 + +0.0 1,727,290 + +0.3 1,727,290 + -1.5 1,727,290 + -3.1 1,727,291 - -1.4 1,727,291 - -0.6 1,727,297 + -2.0 1,727,297 + -0.4 1,727,297 + -0.4 1,727,297 + +0.5 1,727,298 - +3.4
Or see this region's nucleotide sequence