Experiment: WM_RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt pyrC and dinI are separated by 73 nucleotides dinI and bssS are separated by 289 nucleotides bssS and solA are separated by 114 nucleotides
MCAODC_23090: pyrC - dihydroorotase, at 1,358,728 to 1,359,774
pyrC
MCAODC_23095: dinI - DNA damage-inducible protein I, at 1,359,848 to 1,360,093
dinI
MCAODC_23100: bssS - biofilm formation regulator BssS, at 1,360,383 to 1,360,637
bssS
MCAODC_23105: solA - N-methyl-L-tryptophan oxidase, at 1,360,752 to 1,361,870
solA
Position (kb)
1360
1361 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1359.388 kb on + strand, within pyrC at 1359.389 kb on - strand, within pyrC at 1359.562 kb on + strand, within pyrC at 1359.637 kb on + strand, within pyrC at 1359.637 kb on + strand, within pyrC at 1359.752 kb on + strand at 1359.753 kb on - strand at 1359.798 kb on + strand at 1359.798 kb on + strand at 1359.798 kb on + strand at 1359.799 kb on - strand at 1359.799 kb on - strand at 1359.799 kb on - strand at 1359.844 kb on + strand at 1359.847 kb on + strand at 1359.938 kb on + strand, within dinI at 1359.966 kb on + strand, within dinI at 1359.967 kb on - strand, within dinI at 1359.972 kb on + strand, within dinI at 1359.973 kb on - strand, within dinI at 1359.991 kb on + strand, within dinI at 1360.094 kb on + strand at 1360.300 kb on + strand at 1360.301 kb on - strand at 1360.309 kb on - strand at 1360.358 kb on + strand at 1360.423 kb on + strand, within bssS at 1360.448 kb on + strand, within bssS at 1360.452 kb on + strand, within bssS at 1360.494 kb on - strand, within bssS at 1360.573 kb on + strand, within bssS at 1360.573 kb on + strand, within bssS at 1360.697 kb on + strand at 1360.697 kb on + strand at 1360.698 kb on - strand at 1360.698 kb on - strand at 1360.698 kb on - strand at 1360.699 kb on + strand at 1360.699 kb on + strand at 1360.699 kb on + strand at 1360.717 kb on + strand at 1360.718 kb on - strand at 1360.810 kb on - strand at 1360.838 kb on + strand at 1360.929 kb on + strand, within solA at 1361.006 kb on - strand, within solA at 1361.117 kb on + strand, within solA at 1361.154 kb on + strand, within solA at 1361.155 kb on - strand, within solA at 1361.155 kb on - strand, within solA at 1361.297 kb on - strand, within solA at 1361.300 kb on + strand, within solA at 1361.300 kb on + strand, within solA at 1361.301 kb on - strand, within solA at 1361.301 kb on - strand, within solA at 1361.362 kb on + strand, within solA at 1361.399 kb on - strand, within solA at 1361.402 kb on + strand, within solA at 1361.407 kb on + strand, within solA at 1361.408 kb on - strand, within solA at 1361.419 kb on - strand, within solA at 1361.437 kb on - strand, within solA at 1361.494 kb on - strand, within solA at 1361.497 kb on - strand, within solA at 1361.635 kb on + strand, within solA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_RB68 remove 1,359,388 + pyrC MCAODC_23090 0.63 -1.6 1,359,389 - pyrC MCAODC_23090 0.63 -1.1 1,359,562 + pyrC MCAODC_23090 0.80 -0.9 1,359,637 + pyrC MCAODC_23090 0.87 -1.4 1,359,637 + pyrC MCAODC_23090 0.87 +0.5 1,359,752 + +0.6 1,359,753 - -1.8 1,359,798 + +0.2 1,359,798 + -0.4 1,359,798 + +0.2 1,359,799 - -0.2 1,359,799 - -1.8 1,359,799 - -2.1 1,359,844 + -1.1 1,359,847 + +0.5 1,359,938 + dinI MCAODC_23095 0.37 +1.5 1,359,966 + dinI MCAODC_23095 0.48 +0.7 1,359,967 - dinI MCAODC_23095 0.48 +1.4 1,359,972 + dinI MCAODC_23095 0.50 +0.6 1,359,973 - dinI MCAODC_23095 0.51 -1.1 1,359,991 + dinI MCAODC_23095 0.58 -1.3 1,360,094 + -0.1 1,360,300 + -0.5 1,360,301 - -1.5 1,360,309 - +0.2 1,360,358 + +1.0 1,360,423 + bssS MCAODC_23100 0.16 +0.3 1,360,448 + bssS MCAODC_23100 0.25 -0.0 1,360,452 + bssS MCAODC_23100 0.27 +0.4 1,360,494 - bssS MCAODC_23100 0.44 +0.5 1,360,573 + bssS MCAODC_23100 0.75 +1.1 1,360,573 + bssS MCAODC_23100 0.75 +0.0 1,360,697 + -1.3 1,360,697 + -1.4 1,360,698 - +1.1 1,360,698 - -0.6 1,360,698 - +0.3 1,360,699 + -0.9 1,360,699 + -2.1 1,360,699 + +0.2 1,360,717 + +0.4 1,360,718 - +0.4 1,360,810 - -1.2 1,360,838 + -2.3 1,360,929 + solA MCAODC_23105 0.16 -1.3 1,361,006 - solA MCAODC_23105 0.23 +0.0 1,361,117 + solA MCAODC_23105 0.33 +0.6 1,361,154 + solA MCAODC_23105 0.36 -0.2 1,361,155 - solA MCAODC_23105 0.36 -1.3 1,361,155 - solA MCAODC_23105 0.36 -1.1 1,361,297 - solA MCAODC_23105 0.49 +1.2 1,361,300 + solA MCAODC_23105 0.49 +0.3 1,361,300 + solA MCAODC_23105 0.49 +0.6 1,361,301 - solA MCAODC_23105 0.49 -1.5 1,361,301 - solA MCAODC_23105 0.49 +0.6 1,361,362 + solA MCAODC_23105 0.55 +0.2 1,361,399 - solA MCAODC_23105 0.58 +1.3 1,361,402 + solA MCAODC_23105 0.58 +0.5 1,361,407 + solA MCAODC_23105 0.59 -1.1 1,361,408 - solA MCAODC_23105 0.59 +2.1 1,361,419 - solA MCAODC_23105 0.60 -2.0 1,361,437 - solA MCAODC_23105 0.61 -0.1 1,361,494 - solA MCAODC_23105 0.66 -0.0 1,361,497 - solA MCAODC_23105 0.67 -1.4 1,361,635 + solA MCAODC_23105 0.79 -0.9
Or see this region's nucleotide sequence