Strain Fitness in Escherichia coli ECRC101 around MCAODC_22975

Experiment: WM_RB68

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyceD and yceF are separated by 159 nucleotidesyceF and rluC are separated by 100 nucleotidesrluC and rne are separated by 572 nucleotides MCAODC_22960: yceD - 23S rRNA accumulation protein YceD, at 1,334,069 to 1,334,590 yceD MCAODC_22970: yceF - 7-methyl-GTP pyrophosphatase, at 1,334,750 to 1,335,373 yceF MCAODC_22975: rluC - 23S rRNA pseudouridine(955/2504/2580) synthase RluC, at 1,335,474 to 1,336,433 rluC MCAODC_22980: rne - ribonuclease E, at 1,337,006 to 1,340,191 rne Position (kb) 1335 1336 1337Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1334.515 kb on - strand, within yceDat 1334.515 kb on - strand, within yceDat 1334.515 kb on - strand, within yceDat 1334.515 kb on - strand, within yceDat 1334.519 kb on - strand, within yceDat 1334.519 kb on - strand, within yceDat 1334.519 kb on - strand, within yceDat 1334.691 kb on + strandat 1334.692 kb on - strandat 1334.741 kb on + strandat 1334.742 kb on - strandat 1334.742 kb on - strandat 1334.742 kb on - strandat 1334.770 kb on - strandat 1334.770 kb on - strandat 1334.770 kb on - strandat 1334.770 kb on - strandat 1334.771 kb on + strandat 1334.772 kb on - strandat 1334.795 kb on - strandat 1334.795 kb on - strandat 1334.800 kb on + strandat 1334.801 kb on - strandat 1334.805 kb on + strandat 1334.983 kb on + strand, within yceFat 1335.000 kb on + strand, within yceFat 1335.000 kb on + strand, within yceFat 1335.001 kb on - strand, within yceFat 1335.001 kb on - strand, within yceFat 1335.001 kb on - strand, within yceFat 1335.063 kb on + strand, within yceFat 1335.083 kb on - strand, within yceFat 1335.196 kb on + strand, within yceFat 1335.200 kb on + strand, within yceFat 1335.201 kb on - strand, within yceFat 1335.235 kb on + strand, within yceFat 1335.241 kb on + strand, within yceFat 1335.242 kb on - strand, within yceFat 1335.339 kb on + strandat 1335.453 kb on + strandat 1335.462 kb on + strandat 1335.462 kb on + strandat 1335.462 kb on + strandat 1335.463 kb on - strandat 1335.463 kb on - strandat 1335.463 kb on - strandat 1335.463 kb on - strandat 1335.463 kb on - strandat 1335.463 kb on - strandat 1335.463 kb on - strandat 1335.464 kb on + strandat 1335.464 kb on + strandat 1335.464 kb on + strandat 1335.465 kb on - strandat 1335.465 kb on - strandat 1335.465 kb on - strandat 1335.465 kb on - strandat 1335.465 kb on - strandat 1335.465 kb on - strandat 1335.465 kb on - strandat 1335.465 kb on - strandat 1335.476 kb on - strandat 1335.685 kb on + strand, within rluCat 1335.686 kb on - strand, within rluCat 1335.686 kb on - strand, within rluCat 1335.693 kb on - strand, within rluCat 1335.693 kb on - strand, within rluCat 1335.693 kb on - strand, within rluCat 1335.732 kb on - strand, within rluCat 1335.732 kb on - strand, within rluCat 1335.758 kb on - strand, within rluCat 1336.078 kb on - strand, within rluCat 1336.096 kb on - strand, within rluCat 1336.116 kb on - strand, within rluCat 1336.144 kb on + strand, within rluCat 1336.145 kb on - strand, within rluCat 1336.145 kb on - strand, within rluCat 1336.145 kb on - strand, within rluCat 1336.146 kb on + strand, within rluCat 1336.147 kb on - strand, within rluCat 1336.147 kb on - strand, within rluCat 1336.147 kb on - strand, within rluCat 1336.233 kb on - strand, within rluCat 1336.260 kb on - strand, within rluCat 1336.261 kb on + strand, within rluCat 1336.272 kb on - strand, within rluCat 1336.275 kb on - strand, within rluCat 1336.397 kb on + strandat 1336.398 kb on - strandat 1336.398 kb on - strandat 1336.447 kb on - strandat 1336.482 kb on - strandat 1336.487 kb on + strandat 1336.487 kb on + strandat 1336.488 kb on - strandat 1336.488 kb on - strandat 1336.488 kb on - strandat 1336.488 kb on - strandat 1336.489 kb on + strandat 1336.490 kb on - strandat 1336.490 kb on - strandat 1336.506 kb on + strandat 1336.506 kb on + strandat 1336.507 kb on - strandat 1336.510 kb on - strandat 1336.517 kb on + strandat 1336.518 kb on - strandat 1336.518 kb on - strandat 1336.530 kb on + strandat 1336.530 kb on + strandat 1336.531 kb on - strandat 1336.540 kb on + strandat 1336.592 kb on - strandat 1336.613 kb on + strandat 1336.614 kb on + strandat 1336.728 kb on + strandat 1336.735 kb on + strandat 1336.807 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_RB68
remove
1,334,515 - yceD MCAODC_22960 0.85 -0.2
1,334,515 - yceD MCAODC_22960 0.85 -0.3
1,334,515 - yceD MCAODC_22960 0.85 +0.3
1,334,515 - yceD MCAODC_22960 0.85 -1.3
1,334,519 - yceD MCAODC_22960 0.86 +0.7
1,334,519 - yceD MCAODC_22960 0.86 -3.3
1,334,519 - yceD MCAODC_22960 0.86 -1.5
1,334,691 + +0.6
1,334,692 - +1.0
1,334,741 + -0.6
1,334,742 - -1.9
1,334,742 - +0.6
1,334,742 - +0.4
1,334,770 - -0.4
1,334,770 - +0.2
1,334,770 - -0.9
1,334,770 - +0.2
1,334,771 + -0.7
1,334,772 - -0.4
1,334,795 - +0.4
1,334,795 - -0.5
1,334,800 + -0.6
1,334,801 - +1.0
1,334,805 + -0.2
1,334,983 + yceF MCAODC_22970 0.37 +0.8
1,335,000 + yceF MCAODC_22970 0.40 +0.0
1,335,000 + yceF MCAODC_22970 0.40 +1.0
1,335,001 - yceF MCAODC_22970 0.40 -0.2
1,335,001 - yceF MCAODC_22970 0.40 +1.5
1,335,001 - yceF MCAODC_22970 0.40 +0.3
1,335,063 + yceF MCAODC_22970 0.50 +1.0
1,335,083 - yceF MCAODC_22970 0.53 -0.2
1,335,196 + yceF MCAODC_22970 0.71 +0.8
1,335,200 + yceF MCAODC_22970 0.72 -0.1
1,335,201 - yceF MCAODC_22970 0.72 -1.3
1,335,235 + yceF MCAODC_22970 0.78 +0.6
1,335,241 + yceF MCAODC_22970 0.79 -0.4
1,335,242 - yceF MCAODC_22970 0.79 -0.8
1,335,339 + -3.1
1,335,453 + +1.4
1,335,462 + -0.2
1,335,462 + -0.5
1,335,462 + +0.7
1,335,463 - -1.8
1,335,463 - +0.4
1,335,463 - +1.1
1,335,463 - +0.4
1,335,463 - -0.3
1,335,463 - -1.4
1,335,463 - -1.0
1,335,464 + -2.7
1,335,464 + +0.1
1,335,464 + -1.8
1,335,465 - -0.5
1,335,465 - +0.2
1,335,465 - +0.2
1,335,465 - +0.1
1,335,465 - -1.1
1,335,465 - -0.2
1,335,465 - +0.5
1,335,465 - +0.2
1,335,476 - -1.1
1,335,685 + rluC MCAODC_22975 0.22 +0.4
1,335,686 - rluC MCAODC_22975 0.22 -1.8
1,335,686 - rluC MCAODC_22975 0.22 +1.4
1,335,693 - rluC MCAODC_22975 0.23 +1.5
1,335,693 - rluC MCAODC_22975 0.23 +0.1
1,335,693 - rluC MCAODC_22975 0.23 +0.9
1,335,732 - rluC MCAODC_22975 0.27 +0.7
1,335,732 - rluC MCAODC_22975 0.27 -0.1
1,335,758 - rluC MCAODC_22975 0.30 -0.5
1,336,078 - rluC MCAODC_22975 0.63 -0.1
1,336,096 - rluC MCAODC_22975 0.65 -0.4
1,336,116 - rluC MCAODC_22975 0.67 -1.6
1,336,144 + rluC MCAODC_22975 0.70 +1.7
1,336,145 - rluC MCAODC_22975 0.70 -0.1
1,336,145 - rluC MCAODC_22975 0.70 -0.3
1,336,145 - rluC MCAODC_22975 0.70 +0.5
1,336,146 + rluC MCAODC_22975 0.70 -1.3
1,336,147 - rluC MCAODC_22975 0.70 +1.0
1,336,147 - rluC MCAODC_22975 0.70 -0.9
1,336,147 - rluC MCAODC_22975 0.70 -1.2
1,336,233 - rluC MCAODC_22975 0.79 +0.3
1,336,260 - rluC MCAODC_22975 0.82 -1.1
1,336,261 + rluC MCAODC_22975 0.82 +0.4
1,336,272 - rluC MCAODC_22975 0.83 +1.1
1,336,275 - rluC MCAODC_22975 0.83 -0.2
1,336,397 + -0.9
1,336,398 - +1.3
1,336,398 - +0.8
1,336,447 - -0.8
1,336,482 - +0.3
1,336,487 + +1.0
1,336,487 + +0.5
1,336,488 - +1.9
1,336,488 - -0.3
1,336,488 - -0.6
1,336,488 - -0.1
1,336,489 + +2.3
1,336,490 - -0.7
1,336,490 - -1.5
1,336,506 + +0.2
1,336,506 + -1.8
1,336,507 - +0.6
1,336,510 - +1.2
1,336,517 + -0.6
1,336,518 - -0.7
1,336,518 - -0.2
1,336,530 + +1.0
1,336,530 + -0.4
1,336,531 - -1.1
1,336,540 + -0.4
1,336,592 - +0.7
1,336,613 + -2.5
1,336,614 + -0.2
1,336,728 + +0.3
1,336,735 + +1.5
1,336,807 + +0.0

Or see this region's nucleotide sequence