Strain Fitness in Escherichia coli ECRC101 around MCAODC_22035

Experiment: WM_RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_22025 and yciE are separated by 78 nucleotidesyciE and yciE are separated by 36 nucleotidesyciE and cotJC are separated by 18 nucleotides MCAODC_22025: MCAODC_22025 - stress-induced acidophilic repeat motif-containing protein, at 1,185,336 to 1,185,518 _22025 MCAODC_22030: yciE - Protein YciF, at 1,185,597 to 1,186,097 yciE MCAODC_22035: yciE - Protein YciE, at 1,186,134 to 1,186,640 yciE MCAODC_22040: cotJC - Mn-containing catalase, at 1,186,659 to 1,187,549 cotJC Position (kb) 1186 1187Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1185.419 kb on + strand, within MCAODC_22025at 1185.649 kb on - strand, within yciEat 1185.711 kb on - strand, within yciEat 1185.976 kb on + strand, within yciEat 1186.061 kb on + strandat 1186.568 kb on + strand, within yciEat 1186.658 kb on + strandat 1186.686 kb on + strandat 1186.689 kb on - strandat 1186.699 kb on + strandat 1186.699 kb on + strandat 1186.699 kb on + strandat 1186.729 kb on + strandat 1186.735 kb on + strandat 1186.735 kb on + strandat 1186.782 kb on + strand, within cotJCat 1186.799 kb on - strand, within cotJCat 1186.840 kb on + strand, within cotJCat 1186.841 kb on - strand, within cotJCat 1186.855 kb on + strand, within cotJCat 1186.855 kb on + strand, within cotJCat 1186.872 kb on - strand, within cotJCat 1186.889 kb on + strand, within cotJCat 1186.889 kb on + strand, within cotJCat 1186.988 kb on - strand, within cotJCat 1187.020 kb on + strand, within cotJCat 1187.024 kb on + strand, within cotJCat 1187.056 kb on - strand, within cotJCat 1187.056 kb on - strand, within cotJCat 1187.066 kb on + strand, within cotJCat 1187.189 kb on - strand, within cotJCat 1187.286 kb on + strand, within cotJCat 1187.296 kb on + strand, within cotJCat 1187.298 kb on + strand, within cotJCat 1187.298 kb on + strand, within cotJCat 1187.298 kb on + strand, within cotJCat 1187.361 kb on + strand, within cotJCat 1187.413 kb on + strand, within cotJCat 1187.438 kb on + strand, within cotJCat 1187.443 kb on + strand, within cotJCat 1187.537 kb on + strandat 1187.565 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_RB68
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1,185,419 + MCAODC_22025 0.45 +1.1
1,185,649 - yciE MCAODC_22030 0.10 +1.4
1,185,711 - yciE MCAODC_22030 0.23 +0.3
1,185,976 + yciE MCAODC_22030 0.76 -0.2
1,186,061 + -1.5
1,186,568 + yciE MCAODC_22035 0.86 +0.4
1,186,658 + -0.4
1,186,686 + -0.3
1,186,689 - +0.0
1,186,699 + -0.9
1,186,699 + -0.9
1,186,699 + -0.2
1,186,729 + +0.4
1,186,735 + +0.0
1,186,735 + +0.1
1,186,782 + cotJC MCAODC_22040 0.14 +0.2
1,186,799 - cotJC MCAODC_22040 0.16 +0.7
1,186,840 + cotJC MCAODC_22040 0.20 -0.6
1,186,841 - cotJC MCAODC_22040 0.20 +2.3
1,186,855 + cotJC MCAODC_22040 0.22 -0.5
1,186,855 + cotJC MCAODC_22040 0.22 +0.1
1,186,872 - cotJC MCAODC_22040 0.24 +1.7
1,186,889 + cotJC MCAODC_22040 0.26 -0.2
1,186,889 + cotJC MCAODC_22040 0.26 +0.7
1,186,988 - cotJC MCAODC_22040 0.37 +1.5
1,187,020 + cotJC MCAODC_22040 0.41 -2.8
1,187,024 + cotJC MCAODC_22040 0.41 +0.1
1,187,056 - cotJC MCAODC_22040 0.45 +0.7
1,187,056 - cotJC MCAODC_22040 0.45 +0.0
1,187,066 + cotJC MCAODC_22040 0.46 +0.0
1,187,189 - cotJC MCAODC_22040 0.59 +1.4
1,187,286 + cotJC MCAODC_22040 0.70 -0.5
1,187,296 + cotJC MCAODC_22040 0.71 -2.4
1,187,298 + cotJC MCAODC_22040 0.72 +0.0
1,187,298 + cotJC MCAODC_22040 0.72 -0.7
1,187,298 + cotJC MCAODC_22040 0.72 +2.3
1,187,361 + cotJC MCAODC_22040 0.79 -0.0
1,187,413 + cotJC MCAODC_22040 0.85 +0.4
1,187,438 + cotJC MCAODC_22040 0.87 +0.9
1,187,443 + cotJC MCAODC_22040 0.88 +1.0
1,187,537 + +0.9
1,187,565 + +1.2

Or see this region's nucleotide sequence