Experiment: WM_RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_21315 and yjdB are separated by 13 nucleotides yjdB and MCAODC_21325 are separated by 7 nucleotides MCAODC_21325 and MCAODC_21330 overlap by 4 nucleotides MCAODC_21330 and MCAODC_21335 are separated by 14 nucleotides MCAODC_21335 and MCAODC_21340 are separated by 11 nucleotides
MCAODC_21315: MCAODC_21315 - phage minor tail protein G, at 1,066,111 to 1,066,533
_21315
MCAODC_21320: yjdB - phage tail protein, at 1,066,547 to 1,067,299
yjdB
MCAODC_21325: MCAODC_21325 - phage tail protein, at 1,067,307 to 1,067,702
_21325
MCAODC_21330: MCAODC_21330 - phage tail protein, at 1,067,699 to 1,068,232
_21330
MCAODC_21335: MCAODC_21335 - phage tail protein, at 1,068,247 to 1,068,600
_21335
MCAODC_21340: MCAODC_21340 - DNA-packaging protein FI, at 1,068,612 to 1,069,010
_21340
Position (kb) 1067
1068 Strain fitness (log2 ratio) -1
0
1 at 1067.329 kb on + strand at 1067.330 kb on - strand at 1067.330 kb on - strand at 1067.352 kb on + strand, within MCAODC_21325 at 1067.393 kb on + strand, within MCAODC_21325 at 1067.513 kb on + strand, within MCAODC_21325 at 1067.514 kb on - strand, within MCAODC_21325 at 1067.534 kb on + strand, within MCAODC_21325 at 1067.560 kb on + strand, within MCAODC_21325 at 1067.561 kb on - strand, within MCAODC_21325 at 1067.561 kb on - strand, within MCAODC_21325 at 1067.561 kb on - strand, within MCAODC_21325 at 1067.694 kb on - strand at 1067.720 kb on - strand at 1067.739 kb on + strand at 1067.906 kb on - strand, within MCAODC_21330 at 1067.938 kb on + strand, within MCAODC_21330 at 1067.943 kb on - strand, within MCAODC_21330 at 1067.984 kb on - strand, within MCAODC_21330 at 1068.297 kb on - strand, within MCAODC_21335
Per-strain Table
Position Strand Gene LocusTag Fraction WM_RB68 remove 1,067,329 + -0.2 1,067,330 - +1.2 1,067,330 - +0.7 1,067,352 + MCAODC_21325 0.11 -1.1 1,067,393 + MCAODC_21325 0.22 +1.3 1,067,513 + MCAODC_21325 0.52 -0.2 1,067,514 - MCAODC_21325 0.52 +0.0 1,067,534 + MCAODC_21325 0.57 -0.7 1,067,560 + MCAODC_21325 0.64 +0.5 1,067,561 - MCAODC_21325 0.64 +0.9 1,067,561 - MCAODC_21325 0.64 -1.3 1,067,561 - MCAODC_21325 0.64 +1.5 1,067,694 - +0.1 1,067,720 - +0.1 1,067,739 + -0.0 1,067,906 - MCAODC_21330 0.39 +0.7 1,067,938 + MCAODC_21330 0.45 -1.5 1,067,943 - MCAODC_21330 0.46 -0.4 1,067,984 - MCAODC_21330 0.53 +0.2 1,068,297 - MCAODC_21335 0.14 -0.6
Or see this region's nucleotide sequence