Strain Fitness in Escherichia coli ECRC101 around MCAODC_21185

Experiment: WM_RB68

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyehI and MCAODC_21185 are separated by 61 nucleotidesMCAODC_21185 and zorO are separated by 109 nucleotideszorO and zorP are separated by 519 nucleotides MCAODC_21180: yehI - Uncharacterized protein YehI, at 1,038,889 to 1,042,518 yehI MCAODC_21185: MCAODC_21185 - Protein, at 1,042,580 to 1,042,897 _21185 MCAODC_21190: zorO - Small toxic protein ZorO, at 1,043,007 to 1,043,096 zorO MCAODC_21200: zorP - Small toxic protein ZorP, at 1,043,616 to 1,043,705 zorP Position (kb) 1042 1043Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1041.599 kb on + strand, within yehIat 1041.626 kb on + strand, within yehIat 1041.690 kb on + strand, within yehIat 1041.881 kb on + strand, within yehIat 1041.885 kb on + strand, within yehIat 1041.885 kb on + strand, within yehIat 1041.886 kb on - strand, within yehIat 1041.886 kb on - strand, within yehIat 1041.886 kb on - strand, within yehIat 1041.965 kb on + strand, within yehIat 1041.968 kb on + strand, within yehIat 1042.164 kb on + strandat 1042.328 kb on - strandat 1042.375 kb on - strandat 1042.429 kb on + strandat 1042.563 kb on + strandat 1042.564 kb on - strandat 1042.607 kb on - strandat 1042.611 kb on - strandat 1042.666 kb on + strand, within MCAODC_21185at 1042.681 kb on - strand, within MCAODC_21185at 1042.786 kb on + strand, within MCAODC_21185at 1042.788 kb on + strand, within MCAODC_21185at 1042.949 kb on + strandat 1042.986 kb on - strandat 1043.074 kb on - strand, within zorOat 1043.324 kb on - strandat 1043.536 kb on - strandat 1043.652 kb on + strand, within zorPat 1043.664 kb on + strand, within zorPat 1043.665 kb on - strand, within zorPat 1043.771 kb on + strandat 1043.771 kb on + strandat 1043.775 kb on + strandat 1043.775 kb on + strandat 1043.853 kb on - strandat 1043.853 kb on - strandat 1043.890 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_RB68
remove
1,041,599 + yehI MCAODC_21180 0.75 -0.5
1,041,626 + yehI MCAODC_21180 0.75 -0.3
1,041,690 + yehI MCAODC_21180 0.77 +0.2
1,041,881 + yehI MCAODC_21180 0.82 +1.2
1,041,885 + yehI MCAODC_21180 0.83 +0.8
1,041,885 + yehI MCAODC_21180 0.83 +0.9
1,041,886 - yehI MCAODC_21180 0.83 +1.5
1,041,886 - yehI MCAODC_21180 0.83 +0.8
1,041,886 - yehI MCAODC_21180 0.83 +0.3
1,041,965 + yehI MCAODC_21180 0.85 +1.7
1,041,968 + yehI MCAODC_21180 0.85 -0.1
1,042,164 + -0.2
1,042,328 - -1.3
1,042,375 - +1.1
1,042,429 + +0.4
1,042,563 + +0.7
1,042,564 - -1.3
1,042,607 - +0.3
1,042,611 - +1.5
1,042,666 + MCAODC_21185 0.27 +1.9
1,042,681 - MCAODC_21185 0.32 +0.1
1,042,786 + MCAODC_21185 0.65 +0.4
1,042,788 + MCAODC_21185 0.65 +0.5
1,042,949 + +1.0
1,042,986 - -0.1
1,043,074 - zorO MCAODC_21190 0.74 -0.2
1,043,324 - +0.5
1,043,536 - -0.5
1,043,652 + zorP MCAODC_21200 0.40 +1.7
1,043,664 + zorP MCAODC_21200 0.53 -0.5
1,043,665 - zorP MCAODC_21200 0.54 -1.6
1,043,771 + -1.5
1,043,771 + +0.8
1,043,775 + -0.5
1,043,775 + -3.0
1,043,853 - +0.8
1,043,853 - -0.4
1,043,890 - +0.1

Or see this region's nucleotide sequence