Experiment: WM_RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt wcaI and gmm overlap by 4 nucleotides gmm and fcl overlap by 1 nucleotides fcl and MCAODC_20595 are separated by 2 nucleotides
MCAODC_20580: wcaI - colanic acid biosynthesis fucosyltransferase WcaI, at 927,785 to 929,008
wcaI
MCAODC_20585: gmm - GDP-mannose mannosyl hydrolase, at 929,005 to 929,487
gmm
MCAODC_20590: fcl - GDP-L-fucose synthase, at 929,487 to 930,452
fcl
MCAODC_20595: MCAODC_20595 - GDP-mannose 4,6-dehydratase, at 930,455 to 931,576
_20595
Position (kb) 929
930 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 928.027 kb on + strand, within wcaI at 928.126 kb on - strand, within wcaI at 928.126 kb on - strand, within wcaI at 928.451 kb on - strand, within wcaI at 928.584 kb on - strand, within wcaI at 928.600 kb on + strand, within wcaI at 928.600 kb on + strand, within wcaI at 928.601 kb on - strand, within wcaI at 928.601 kb on - strand, within wcaI at 928.792 kb on - strand, within wcaI at 928.792 kb on - strand, within wcaI at 928.792 kb on - strand, within wcaI at 928.881 kb on + strand, within wcaI at 928.882 kb on - strand, within wcaI at 928.882 kb on - strand, within wcaI at 928.950 kb on + strand at 928.950 kb on + strand at 928.951 kb on - strand at 928.980 kb on + strand at 928.981 kb on - strand at 928.984 kb on + strand at 928.984 kb on + strand at 928.984 kb on + strand at 928.985 kb on - strand at 928.985 kb on - strand at 928.985 kb on - strand at 929.108 kb on + strand, within gmm at 929.180 kb on + strand, within gmm at 929.180 kb on + strand, within gmm at 929.181 kb on - strand, within gmm at 929.212 kb on - strand, within gmm at 929.527 kb on + strand at 929.527 kb on + strand at 929.528 kb on - strand at 929.657 kb on - strand, within fcl at 929.723 kb on + strand, within fcl at 929.804 kb on + strand, within fcl at 929.925 kb on - strand, within fcl at 929.954 kb on - strand, within fcl at 929.954 kb on - strand, within fcl at 929.981 kb on - strand, within fcl at 930.004 kb on + strand, within fcl at 930.081 kb on + strand, within fcl at 930.081 kb on + strand, within fcl at 930.211 kb on + strand, within fcl at 930.211 kb on + strand, within fcl at 930.229 kb on + strand, within fcl at 930.274 kb on + strand, within fcl at 930.287 kb on + strand, within fcl at 930.355 kb on - strand, within fcl at 930.357 kb on + strand at 930.358 kb on - strand at 930.447 kb on - strand at 930.453 kb on - strand at 930.453 kb on - strand at 930.453 kb on - strand at 930.453 kb on - strand at 930.456 kb on + strand at 930.457 kb on - strand at 930.457 kb on - strand at 930.457 kb on - strand at 930.457 kb on - strand at 930.457 kb on - strand at 930.457 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_RB68 remove 928,027 + wcaI MCAODC_20580 0.20 +1.8 928,126 - wcaI MCAODC_20580 0.28 +0.4 928,126 - wcaI MCAODC_20580 0.28 -0.8 928,451 - wcaI MCAODC_20580 0.54 +0.6 928,584 - wcaI MCAODC_20580 0.65 +0.1 928,600 + wcaI MCAODC_20580 0.67 +0.5 928,600 + wcaI MCAODC_20580 0.67 -1.2 928,601 - wcaI MCAODC_20580 0.67 -0.2 928,601 - wcaI MCAODC_20580 0.67 +0.5 928,792 - wcaI MCAODC_20580 0.82 +0.2 928,792 - wcaI MCAODC_20580 0.82 +0.6 928,792 - wcaI MCAODC_20580 0.82 -1.0 928,881 + wcaI MCAODC_20580 0.90 +0.2 928,882 - wcaI MCAODC_20580 0.90 +0.3 928,882 - wcaI MCAODC_20580 0.90 +0.3 928,950 + -0.1 928,950 + +1.3 928,951 - +0.7 928,980 + -1.8 928,981 - +0.0 928,984 + +0.7 928,984 + -1.9 928,984 + -0.7 928,985 - +0.9 928,985 - -1.5 928,985 - +1.6 929,108 + gmm MCAODC_20585 0.21 -1.7 929,180 + gmm MCAODC_20585 0.36 +2.9 929,180 + gmm MCAODC_20585 0.36 -0.7 929,181 - gmm MCAODC_20585 0.36 +0.4 929,212 - gmm MCAODC_20585 0.43 +0.8 929,527 + -0.3 929,527 + -1.7 929,528 - +0.8 929,657 - fcl MCAODC_20590 0.18 +0.3 929,723 + fcl MCAODC_20590 0.24 -1.4 929,804 + fcl MCAODC_20590 0.33 +0.3 929,925 - fcl MCAODC_20590 0.45 +1.2 929,954 - fcl MCAODC_20590 0.48 +0.3 929,954 - fcl MCAODC_20590 0.48 -0.5 929,981 - fcl MCAODC_20590 0.51 +0.8 930,004 + fcl MCAODC_20590 0.54 +0.0 930,081 + fcl MCAODC_20590 0.61 +0.4 930,081 + fcl MCAODC_20590 0.61 +0.2 930,211 + fcl MCAODC_20590 0.75 +1.3 930,211 + fcl MCAODC_20590 0.75 +0.6 930,229 + fcl MCAODC_20590 0.77 -0.1 930,274 + fcl MCAODC_20590 0.81 -0.1 930,287 + fcl MCAODC_20590 0.83 -0.0 930,355 - fcl MCAODC_20590 0.90 +1.1 930,357 + -0.7 930,358 - +0.9 930,447 - -1.3 930,453 - -1.4 930,453 - +0.6 930,453 - +0.3 930,453 - -1.4 930,456 + +1.6 930,457 - -0.2 930,457 - +0.3 930,457 - +0.7 930,457 - +0.4 930,457 - +0.2 930,457 - -1.1
Or see this region's nucleotide sequence