Strain Fitness in Escherichia coli ECRC101 around MCAODC_20475

Experiment: WM_RB68

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntgndA and perB are separated by 200 nucleotides MCAODC_20470: gndA - NADP-dependent phosphogluconate dehydrogenase, at 899,815 to 901,221 gndA MCAODC_20475: perB - GDP-perosamine N-acetyltransferase, at 901,422 to 902,087 perB Position (kb) 901 902 903Strain fitness (log2 ratio) -2 -1 0 1at 900.480 kb on - strand, within gndAat 900.520 kb on - strand, within gndAat 900.553 kb on - strand, within gndAat 900.565 kb on - strand, within gndAat 900.621 kb on - strand, within gndAat 900.621 kb on - strand, within gndAat 900.680 kb on + strand, within gndAat 900.705 kb on + strand, within gndAat 900.707 kb on + strand, within gndAat 900.708 kb on - strand, within gndAat 900.708 kb on - strand, within gndAat 900.708 kb on - strand, within gndAat 900.708 kb on - strand, within gndAat 900.708 kb on - strand, within gndAat 900.708 kb on - strand, within gndAat 900.712 kb on - strand, within gndAat 900.770 kb on - strand, within gndAat 900.770 kb on - strand, within gndAat 900.862 kb on - strand, within gndAat 900.916 kb on - strand, within gndAat 900.973 kb on - strand, within gndAat 901.058 kb on + strand, within gndAat 901.059 kb on - strand, within gndAat 901.062 kb on - strand, within gndAat 901.062 kb on - strand, within gndAat 901.141 kb on - strandat 901.141 kb on - strandat 901.141 kb on - strandat 901.141 kb on - strandat 901.253 kb on - strandat 901.332 kb on - strandat 901.477 kb on - strandat 901.497 kb on - strand, within perBat 901.573 kb on - strand, within perBat 901.588 kb on - strand, within perBat 901.592 kb on - strand, within perBat 901.592 kb on - strand, within perBat 901.688 kb on - strand, within perBat 901.768 kb on - strand, within perBat 901.776 kb on - strand, within perBat 902.108 kb on - strandat 902.222 kb on - strandat 902.297 kb on - strandat 902.417 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_RB68
remove
900,480 - gndA MCAODC_20470 0.47 +0.6
900,520 - gndA MCAODC_20470 0.50 -0.2
900,553 - gndA MCAODC_20470 0.52 -1.0
900,565 - gndA MCAODC_20470 0.53 +0.7
900,621 - gndA MCAODC_20470 0.57 +1.1
900,621 - gndA MCAODC_20470 0.57 +0.1
900,680 + gndA MCAODC_20470 0.61 -1.6
900,705 + gndA MCAODC_20470 0.63 -0.2
900,707 + gndA MCAODC_20470 0.63 +1.0
900,708 - gndA MCAODC_20470 0.63 +1.1
900,708 - gndA MCAODC_20470 0.63 -1.2
900,708 - gndA MCAODC_20470 0.63 -0.3
900,708 - gndA MCAODC_20470 0.63 +0.2
900,708 - gndA MCAODC_20470 0.63 +0.1
900,708 - gndA MCAODC_20470 0.63 -0.1
900,712 - gndA MCAODC_20470 0.64 +0.8
900,770 - gndA MCAODC_20470 0.68 -0.9
900,770 - gndA MCAODC_20470 0.68 -0.9
900,862 - gndA MCAODC_20470 0.74 +0.4
900,916 - gndA MCAODC_20470 0.78 +0.1
900,973 - gndA MCAODC_20470 0.82 -0.3
901,058 + gndA MCAODC_20470 0.88 +0.3
901,059 - gndA MCAODC_20470 0.88 -0.2
901,062 - gndA MCAODC_20470 0.89 +0.5
901,062 - gndA MCAODC_20470 0.89 -0.2
901,141 - -0.7
901,141 - +1.0
901,141 - +0.2
901,141 - +1.3
901,253 - +0.2
901,332 - -0.2
901,477 - -0.5
901,497 - perB MCAODC_20475 0.11 -2.1
901,573 - perB MCAODC_20475 0.23 -0.5
901,588 - perB MCAODC_20475 0.25 -2.4
901,592 - perB MCAODC_20475 0.26 -0.9
901,592 - perB MCAODC_20475 0.26 -2.5
901,688 - perB MCAODC_20475 0.40 -0.5
901,768 - perB MCAODC_20475 0.52 +0.4
901,776 - perB MCAODC_20475 0.53 -0.7
902,108 - +1.5
902,222 - -0.5
902,297 - +0.5
902,417 + +0.5

Or see this region's nucleotide sequence