Experiment: WM_RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_19990 and MCAODC_19995 are separated by 12 nucleotides MCAODC_19995 and MCAODC_20000 are separated by 155 nucleotides MCAODC_20000 and MCAODC_20005 are separated by 42 nucleotides MCAODC_20005 and MCAODC_20010 are separated by 4 nucleotides MCAODC_20010 and tnp-IS3 are separated by 319 nucleotides tnp-IS3 and tnp-IS3 overlap by 1 nucleotides
MCAODC_19990: MCAODC_19990 - hypothetical protein, at 820,803 to 820,934
_19990
MCAODC_19995: MCAODC_19995 - hypothetical protein, at 820,947 to 821,129
_19995
MCAODC_20000: MCAODC_20000 - SAR-endolysin, at 821,285 to 821,818
_20000
MCAODC_20005: MCAODC_20005 - DUF1327 domain-containing protein, at 821,861 to 822,193
_20005
MCAODC_20010: MCAODC_20010 - lysis protein, at 822,198 to 822,404
_20010
MCAODC_20015: tnp-IS3 - IS3 family transposase, at 822,724 to 823,050
tnp-IS3
MCAODC_20020: tnp-IS3 - IS3 family transposase, at 823,050 to 823,937
tnp-IS3
Position (kb)
821
822
823 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 820.893 kb on + strand, within MCAODC_19990 at 820.894 kb on - strand, within MCAODC_19990 at 820.894 kb on - strand, within MCAODC_19990 at 820.938 kb on + strand at 820.939 kb on - strand at 820.939 kb on - strand at 820.939 kb on - strand at 820.985 kb on - strand, within MCAODC_19995 at 821.007 kb on - strand, within MCAODC_19995 at 821.024 kb on + strand, within MCAODC_19995 at 821.025 kb on - strand, within MCAODC_19995 at 821.025 kb on - strand, within MCAODC_19995 at 821.027 kb on + strand, within MCAODC_19995 at 821.346 kb on + strand, within MCAODC_20000 at 821.539 kb on + strand, within MCAODC_20000 at 821.569 kb on + strand, within MCAODC_20000 at 821.694 kb on + strand, within MCAODC_20000 at 822.444 kb on + strand at 822.570 kb on - strand at 822.582 kb on - strand at 822.582 kb on - strand at 822.582 kb on - strand at 822.628 kb on + strand at 822.628 kb on + strand at 822.630 kb on + strand at 822.630 kb on + strand at 822.630 kb on + strand at 822.630 kb on + strand at 822.630 kb on + strand at 822.630 kb on + strand at 822.631 kb on - strand at 822.631 kb on - strand at 822.631 kb on - strand at 822.631 kb on - strand at 822.631 kb on - strand at 822.631 kb on - strand at 822.631 kb on - strand at 822.634 kb on + strand at 822.634 kb on + strand at 822.634 kb on + strand at 822.634 kb on + strand at 822.635 kb on - strand at 822.635 kb on - strand at 822.635 kb on - strand at 822.635 kb on - strand at 822.652 kb on + strand at 822.652 kb on + strand at 822.653 kb on - strand at 822.661 kb on + strand at 822.697 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_RB68 remove 820,893 + MCAODC_19990 0.68 +1.9 820,894 - MCAODC_19990 0.69 -0.2 820,894 - MCAODC_19990 0.69 +0.2 820,938 + -1.3 820,939 - -1.0 820,939 - +0.4 820,939 - +1.4 820,985 - MCAODC_19995 0.21 -1.4 821,007 - MCAODC_19995 0.33 +0.0 821,024 + MCAODC_19995 0.42 -1.5 821,025 - MCAODC_19995 0.43 +0.0 821,025 - MCAODC_19995 0.43 -1.1 821,027 + MCAODC_19995 0.44 +0.0 821,346 + MCAODC_20000 0.11 +0.4 821,539 + MCAODC_20000 0.48 -0.2 821,569 + MCAODC_20000 0.53 -0.3 821,694 + MCAODC_20000 0.77 +0.2 822,444 + +0.3 822,570 - -0.9 822,582 - +0.3 822,582 - +0.4 822,582 - +1.0 822,628 + -1.2 822,628 + -0.1 822,630 + -0.4 822,630 + -0.8 822,630 + -1.1 822,630 + +0.3 822,630 + +0.8 822,630 + -0.3 822,631 - +0.1 822,631 - +0.5 822,631 - +0.3 822,631 - -0.5 822,631 - -0.7 822,631 - +0.8 822,631 - -1.8 822,634 + -1.4 822,634 + -0.2 822,634 + -0.1 822,634 + +1.6 822,635 - -0.0 822,635 - -1.3 822,635 - +0.1 822,635 - +1.3 822,652 + +0.2 822,652 + -1.2 822,653 - +0.8 822,661 + +0.4 822,697 - -0.6
Or see this region's nucleotide sequence