Strain Fitness in Escherichia coli ECRC101 around MCAODC_19835

Experiment: WM_RB68

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 nthprS and hprR overlap by 1 nucleotideshprR and hiuH are separated by 21 nucleotideshiuH and msrP are separated by 107 nucleotides MCAODC_19825: hprS - two-component system sensor histidine kinase HprS, at 790,542 to 791,900 hprS MCAODC_19830: hprR - response regulator transcription factor HprR, at 791,900 to 792,682 hprR MCAODC_19835: hiuH - hydroxyisourate hydrolase, at 792,704 to 793,117 hiuH MCAODC_19840: msrP - protein-methionine-sulfoxide reductase catalytic subunit MsrP, at 793,225 to 794,229 msrP Position (kb) 792 793 794Strain fitness (log2 ratio) -2 -1 0 1at 791.890 kb on - strandat 792.026 kb on - strand, within hprRat 792.416 kb on - strand, within hprRat 792.416 kb on - strand, within hprRat 792.556 kb on + strand, within hprRat 792.557 kb on - strand, within hprRat 792.587 kb on + strand, within hprRat 792.595 kb on - strand, within hprRat 792.768 kb on - strand, within hiuHat 792.768 kb on - strand, within hiuHat 792.883 kb on + strand, within hiuHat 792.884 kb on - strand, within hiuHat 792.901 kb on + strand, within hiuHat 792.971 kb on - strand, within hiuHat 793.061 kb on + strand, within hiuHat 793.104 kb on - strandat 793.122 kb on + strandat 793.126 kb on + strandat 793.130 kb on + strandat 793.147 kb on + strandat 793.365 kb on + strand, within msrPat 793.365 kb on + strand, within msrPat 793.484 kb on - strand, within msrPat 793.486 kb on - strand, within msrPat 793.645 kb on - strand, within msrPat 793.648 kb on + strand, within msrPat 793.654 kb on - strand, within msrPat 793.771 kb on + strand, within msrPat 793.771 kb on + strand, within msrPat 793.772 kb on - strand, within msrPat 793.829 kb on - strand, within msrPat 793.834 kb on + strand, within msrPat 793.834 kb on + strand, within msrPat 793.834 kb on + strand, within msrPat 793.834 kb on + strand, within msrPat 793.889 kb on + strand, within msrPat 793.890 kb on - strand, within msrPat 793.890 kb on - strand, within msrPat 793.890 kb on - strand, within msrPat 793.989 kb on + strand, within msrPat 793.993 kb on - strand, within msrPat 793.993 kb on - strand, within msrPat 794.067 kb on + strand, within msrP

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_RB68
remove
791,890 - +0.1
792,026 - hprR MCAODC_19830 0.16 -0.9
792,416 - hprR MCAODC_19830 0.66 -0.6
792,416 - hprR MCAODC_19830 0.66 +1.0
792,556 + hprR MCAODC_19830 0.84 -0.7
792,557 - hprR MCAODC_19830 0.84 -0.3
792,587 + hprR MCAODC_19830 0.88 -1.1
792,595 - hprR MCAODC_19830 0.89 -0.7
792,768 - hiuH MCAODC_19835 0.15 -0.4
792,768 - hiuH MCAODC_19835 0.15 -1.3
792,883 + hiuH MCAODC_19835 0.43 -1.1
792,884 - hiuH MCAODC_19835 0.43 -2.3
792,901 + hiuH MCAODC_19835 0.48 -1.3
792,971 - hiuH MCAODC_19835 0.64 -2.0
793,061 + hiuH MCAODC_19835 0.86 +0.2
793,104 - +0.1
793,122 + +0.6
793,126 + -0.4
793,130 + +1.0
793,147 + +0.7
793,365 + msrP MCAODC_19840 0.14 +0.7
793,365 + msrP MCAODC_19840 0.14 -1.9
793,484 - msrP MCAODC_19840 0.26 -0.6
793,486 - msrP MCAODC_19840 0.26 -1.1
793,645 - msrP MCAODC_19840 0.42 +0.6
793,648 + msrP MCAODC_19840 0.42 -0.1
793,654 - msrP MCAODC_19840 0.43 -0.6
793,771 + msrP MCAODC_19840 0.54 -1.8
793,771 + msrP MCAODC_19840 0.54 -0.9
793,772 - msrP MCAODC_19840 0.54 -1.1
793,829 - msrP MCAODC_19840 0.60 +0.5
793,834 + msrP MCAODC_19840 0.61 +0.7
793,834 + msrP MCAODC_19840 0.61 -1.2
793,834 + msrP MCAODC_19840 0.61 -0.9
793,834 + msrP MCAODC_19840 0.61 +0.3
793,889 + msrP MCAODC_19840 0.66 -0.8
793,890 - msrP MCAODC_19840 0.66 -0.5
793,890 - msrP MCAODC_19840 0.66 +0.2
793,890 - msrP MCAODC_19840 0.66 -1.1
793,989 + msrP MCAODC_19840 0.76 -1.3
793,993 - msrP MCAODC_19840 0.76 +0.3
793,993 - msrP MCAODC_19840 0.76 +0.4
794,067 + msrP MCAODC_19840 0.84 -0.3

Or see this region's nucleotide sequence