Experiment: WM_RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt thrS and MCAODC_18360 are separated by 522 nucleotides MCAODC_18360 and yniD are separated by 174 nucleotides yniD and ydiY are separated by 52 nucleotides
MCAODC_18355: thrS - threonine--tRNA ligase, at 529,623 to 531,551
thrS
MCAODC_18360: MCAODC_18360 - ShET2 enterotoxin, N-terminal region, at 532,074 to 533,972
_18360
MCAODC_18365: yniD - Uncharacterized protein YniD, at 534,147 to 534,254
yniD
MCAODC_18370: ydiY - Uncharacterized protein YdiY, at 534,307 to 535,065
ydiY
Position (kb) 532
533
534 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 531.692 kb on - strand at 531.725 kb on - strand at 531.748 kb on - strand at 531.748 kb on - strand at 531.748 kb on - strand at 531.789 kb on - strand at 531.796 kb on - strand at 532.110 kb on - strand at 532.167 kb on - strand at 532.723 kb on + strand, within MCAODC_18360 at 532.845 kb on - strand, within MCAODC_18360 at 532.846 kb on + strand, within MCAODC_18360 at 532.846 kb on + strand, within MCAODC_18360 at 532.847 kb on - strand, within MCAODC_18360 at 532.847 kb on - strand, within MCAODC_18360 at 532.874 kb on - strand, within MCAODC_18360 at 532.937 kb on + strand, within MCAODC_18360 at 532.995 kb on - strand, within MCAODC_18360 at 533.041 kb on - strand, within MCAODC_18360 at 533.041 kb on - strand, within MCAODC_18360 at 533.041 kb on - strand, within MCAODC_18360 at 533.262 kb on - strand, within MCAODC_18360 at 533.921 kb on - strand at 534.047 kb on + strand at 534.071 kb on + strand at 534.131 kb on + strand at 534.226 kb on + strand, within yniD at 534.303 kb on - strand at 534.309 kb on - strand at 534.309 kb on - strand at 534.318 kb on - strand at 534.329 kb on - strand at 534.329 kb on - strand at 534.396 kb on - strand, within ydiY at 534.396 kb on - strand, within ydiY at 534.437 kb on - strand, within ydiY at 534.528 kb on - strand, within ydiY at 534.579 kb on - strand, within ydiY at 534.579 kb on - strand, within ydiY at 534.691 kb on - strand, within ydiY at 534.691 kb on - strand, within ydiY at 534.691 kb on - strand, within ydiY at 534.693 kb on - strand, within ydiY at 534.724 kb on + strand, within ydiY at 534.725 kb on - strand, within ydiY at 534.735 kb on - strand, within ydiY at 534.799 kb on - strand, within ydiY at 534.799 kb on - strand, within ydiY at 534.914 kb on + strand, within ydiY
Per-strain Table
Position Strand Gene LocusTag Fraction WM_RB68 remove 531,692 - +0.3 531,725 - -0.3 531,748 - -1.1 531,748 - -0.9 531,748 - +1.3 531,789 - -0.0 531,796 - +1.7 532,110 - +2.9 532,167 - -0.6 532,723 + MCAODC_18360 0.34 -1.1 532,845 - MCAODC_18360 0.41 +0.3 532,846 + MCAODC_18360 0.41 -1.5 532,846 + MCAODC_18360 0.41 +0.3 532,847 - MCAODC_18360 0.41 +3.6 532,847 - MCAODC_18360 0.41 -0.5 532,874 - MCAODC_18360 0.42 -2.5 532,937 + MCAODC_18360 0.45 +1.8 532,995 - MCAODC_18360 0.48 -1.0 533,041 - MCAODC_18360 0.51 +2.2 533,041 - MCAODC_18360 0.51 +0.0 533,041 - MCAODC_18360 0.51 -0.4 533,262 - MCAODC_18360 0.63 +0.5 533,921 - -0.2 534,047 + -0.7 534,071 + -1.1 534,131 + +0.9 534,226 + yniD MCAODC_18365 0.73 -0.6 534,303 - -0.6 534,309 - +0.6 534,309 - -0.5 534,318 - -0.4 534,329 - -0.1 534,329 - -1.0 534,396 - ydiY MCAODC_18370 0.12 +1.4 534,396 - ydiY MCAODC_18370 0.12 -0.2 534,437 - ydiY MCAODC_18370 0.17 -0.2 534,528 - ydiY MCAODC_18370 0.29 -2.1 534,579 - ydiY MCAODC_18370 0.36 +1.0 534,579 - ydiY MCAODC_18370 0.36 -0.2 534,691 - ydiY MCAODC_18370 0.51 -0.0 534,691 - ydiY MCAODC_18370 0.51 +0.3 534,691 - ydiY MCAODC_18370 0.51 +0.9 534,693 - ydiY MCAODC_18370 0.51 +1.1 534,724 + ydiY MCAODC_18370 0.55 +0.6 534,725 - ydiY MCAODC_18370 0.55 +0.6 534,735 - ydiY MCAODC_18370 0.56 +0.9 534,799 - ydiY MCAODC_18370 0.65 +0.6 534,799 - ydiY MCAODC_18370 0.65 -1.3 534,914 + ydiY MCAODC_18370 0.80 +0.9
Or see this region's nucleotide sequence