Strain Fitness in Escherichia coli ECRC101 around MCAODC_16710

Experiment: WM_RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydeQ and ydeR are separated by 59 nucleotidesydeR and ydeS are separated by 12 nucleotidesydeS and fimA are separated by 13 nucleotides MCAODC_16700: ydeQ - Uncharacterized fimbrial-like protein YdeQ, at 245,639 to 246,553 ydeQ MCAODC_16705: ydeR - Uncharacterized fimbrial-like protein YdeR, at 246,613 to 247,116 ydeR MCAODC_16710: ydeS - Uncharacterized fimbrial-like protein YdeS, at 247,129 to 247,659 ydeS MCAODC_16715: fimA - type 1 fimbrial major subunit FimA, at 247,673 to 250,324 fimA Position (kb) 247 248Strain fitness (log2 ratio) -1 0 1at 246.218 kb on - strand, within ydeQat 246.362 kb on + strand, within ydeQat 246.408 kb on - strand, within ydeQat 246.440 kb on - strand, within ydeQat 247.036 kb on - strand, within ydeRat 247.088 kb on - strandat 247.215 kb on - strand, within ydeSat 247.316 kb on - strand, within ydeSat 247.628 kb on - strandat 247.894 kb on + strandat 248.296 kb on + strand, within fimAat 248.330 kb on - strand, within fimAat 248.398 kb on - strand, within fimAat 248.612 kb on + strand, within fimA

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_RB68
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246,218 - ydeQ MCAODC_16700 0.63 +1.2
246,362 + ydeQ MCAODC_16700 0.79 +1.0
246,408 - ydeQ MCAODC_16700 0.84 -0.1
246,440 - ydeQ MCAODC_16700 0.88 -0.2
247,036 - ydeR MCAODC_16705 0.84 -0.8
247,088 - -0.6
247,215 - ydeS MCAODC_16710 0.16 -0.1
247,316 - ydeS MCAODC_16710 0.35 +0.3
247,628 - +0.1
247,894 + -0.4
248,296 + fimA MCAODC_16715 0.23 -0.4
248,330 - fimA MCAODC_16715 0.25 +0.6
248,398 - fimA MCAODC_16715 0.27 +1.3
248,612 + fimA MCAODC_16715 0.35 +0.2

Or see this region's nucleotide sequence