Strain Fitness in Escherichia coli ECRC101 around MCAODC_16680

Experiment: WM_RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydeM and ydeN are separated by 261 nucleotidesydeN and ydeO are separated by 403 nucleotides MCAODC_16675: ydeM - anaerobic sulfatase maturase, at 238,451 to 239,608 ydeM MCAODC_16680: ydeN - Uncharacterized sulfatase YdeN, at 239,870 to 241,342 ydeN MCAODC_16685: ydeO - acid stress response transcriptional regulator YdeO, at 241,746 to 242,507 ydeO Position (kb) 239 240 241 242Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 239.473 kb on - strand, within ydeMat 239.658 kb on - strandat 239.719 kb on + strandat 239.754 kb on - strandat 239.841 kb on - strandat 239.861 kb on - strandat 239.909 kb on + strandat 240.100 kb on + strand, within ydeNat 240.101 kb on - strand, within ydeNat 240.241 kb on - strand, within ydeNat 240.254 kb on - strand, within ydeNat 240.326 kb on - strand, within ydeNat 240.453 kb on + strand, within ydeNat 240.514 kb on + strand, within ydeNat 240.814 kb on - strand, within ydeNat 240.967 kb on - strand, within ydeNat 241.050 kb on - strand, within ydeNat 241.157 kb on + strand, within ydeNat 241.184 kb on - strand, within ydeNat 241.363 kb on + strandat 241.364 kb on - strandat 241.868 kb on - strand, within ydeOat 242.042 kb on + strand, within ydeOat 242.120 kb on + strand, within ydeO

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_RB68
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239,473 - ydeM MCAODC_16675 0.88 -1.0
239,658 - -1.6
239,719 + +0.5
239,754 - +0.9
239,841 - +0.4
239,861 - -1.6
239,909 + +0.1
240,100 + ydeN MCAODC_16680 0.16 +0.6
240,101 - ydeN MCAODC_16680 0.16 +0.3
240,241 - ydeN MCAODC_16680 0.25 +0.4
240,254 - ydeN MCAODC_16680 0.26 -3.0
240,326 - ydeN MCAODC_16680 0.31 -0.5
240,453 + ydeN MCAODC_16680 0.40 -2.8
240,514 + ydeN MCAODC_16680 0.44 -2.0
240,814 - ydeN MCAODC_16680 0.64 -0.1
240,967 - ydeN MCAODC_16680 0.74 -0.4
241,050 - ydeN MCAODC_16680 0.80 -0.6
241,157 + ydeN MCAODC_16680 0.87 +0.3
241,184 - ydeN MCAODC_16680 0.89 +2.4
241,363 + -0.1
241,364 - -0.8
241,868 - ydeO MCAODC_16685 0.16 -1.9
242,042 + ydeO MCAODC_16685 0.39 +0.3
242,120 + ydeO MCAODC_16685 0.49 -0.1

Or see this region's nucleotide sequence