Experiment: WM_RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fdnG and fdnH are separated by 12 nucleotides fdnH and fdnI overlap by 8 nucleotides fdnI and yddM are separated by 227 nucleotides yddM and adhP are separated by 145 nucleotides
MCAODC_16555: fdnG - formate dehydrogenase-N subunit alpha, at 206,396 to 209,443
fdnG
MCAODC_16560: fdnH - formate dehydrogenase N subunit beta, at 209,456 to 210,340
fdnH
MCAODC_16565: fdnI - formate dehydrogenase-N subunit gamma, at 210,333 to 210,986
fdnI
MCAODC_16570: yddM - HigA family addiction module antitoxin, at 211,214 to 211,498
yddM
MCAODC_16575: adhP - alcohol dehydrogenase AdhP, at 211,644 to 212,654
adhP
Position (kb) 210
211 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 209.351 kb on + strand at 209.351 kb on + strand at 209.352 kb on - strand at 209.353 kb on + strand at 209.353 kb on + strand at 209.353 kb on + strand at 209.353 kb on + strand at 209.354 kb on - strand at 209.354 kb on - strand at 209.355 kb on + strand at 209.355 kb on + strand at 209.355 kb on + strand at 209.355 kb on + strand at 209.355 kb on + strand at 209.356 kb on - strand at 209.359 kb on + strand at 209.531 kb on + strand at 209.651 kb on + strand, within fdnH at 209.701 kb on + strand, within fdnH at 209.816 kb on + strand, within fdnH at 209.929 kb on + strand, within fdnH at 209.929 kb on + strand, within fdnH at 209.929 kb on + strand, within fdnH at 209.929 kb on + strand, within fdnH at 209.930 kb on - strand, within fdnH at 209.930 kb on - strand, within fdnH at 210.095 kb on + strand, within fdnH at 210.096 kb on - strand, within fdnH at 210.127 kb on + strand, within fdnH at 210.127 kb on + strand, within fdnH at 210.131 kb on + strand, within fdnH at 210.131 kb on + strand, within fdnH at 210.281 kb on + strand at 210.587 kb on + strand, within fdnI at 210.601 kb on + strand, within fdnI at 210.635 kb on + strand, within fdnI at 210.635 kb on + strand, within fdnI at 210.653 kb on + strand, within fdnI at 210.731 kb on + strand, within fdnI at 210.839 kb on + strand, within fdnI at 210.839 kb on + strand, within fdnI at 210.839 kb on + strand, within fdnI at 210.839 kb on + strand, within fdnI at 210.840 kb on - strand, within fdnI at 210.840 kb on - strand, within fdnI at 210.843 kb on + strand, within fdnI at 210.843 kb on + strand, within fdnI at 210.843 kb on + strand, within fdnI at 210.843 kb on + strand, within fdnI at 210.843 kb on + strand, within fdnI at 210.843 kb on + strand, within fdnI at 210.984 kb on + strand at 210.984 kb on + strand at 210.984 kb on + strand at 211.043 kb on + strand at 211.044 kb on - strand at 211.052 kb on + strand at 211.053 kb on - strand at 211.053 kb on - strand at 211.336 kb on + strand, within yddM at 211.462 kb on + strand, within yddM at 211.462 kb on + strand, within yddM at 211.463 kb on - strand, within yddM at 211.463 kb on - strand, within yddM at 211.579 kb on - strand at 211.786 kb on - strand, within adhP at 211.786 kb on - strand, within adhP at 211.862 kb on + strand, within adhP at 211.945 kb on - strand, within adhP
Per-strain Table
Position Strand Gene LocusTag Fraction WM_RB68 remove 209,351 + -0.4 209,351 + -0.1 209,352 - -0.0 209,353 + +0.9 209,353 + -0.1 209,353 + -1.0 209,353 + +1.8 209,354 - -0.9 209,354 - +0.3 209,355 + -1.0 209,355 + +0.9 209,355 + +1.1 209,355 + -0.3 209,355 + +1.1 209,356 - +0.3 209,359 + -0.6 209,531 + -0.7 209,651 + fdnH MCAODC_16560 0.22 +1.1 209,701 + fdnH MCAODC_16560 0.28 -1.2 209,816 + fdnH MCAODC_16560 0.41 +1.2 209,929 + fdnH MCAODC_16560 0.53 -0.6 209,929 + fdnH MCAODC_16560 0.53 -1.0 209,929 + fdnH MCAODC_16560 0.53 +0.5 209,929 + fdnH MCAODC_16560 0.53 -1.0 209,930 - fdnH MCAODC_16560 0.54 -0.5 209,930 - fdnH MCAODC_16560 0.54 -1.2 210,095 + fdnH MCAODC_16560 0.72 +0.1 210,096 - fdnH MCAODC_16560 0.72 +0.5 210,127 + fdnH MCAODC_16560 0.76 -1.5 210,127 + fdnH MCAODC_16560 0.76 +0.5 210,131 + fdnH MCAODC_16560 0.76 -0.3 210,131 + fdnH MCAODC_16560 0.76 +1.2 210,281 + -1.7 210,587 + fdnI MCAODC_16565 0.39 -0.8 210,601 + fdnI MCAODC_16565 0.41 +1.3 210,635 + fdnI MCAODC_16565 0.46 +0.9 210,635 + fdnI MCAODC_16565 0.46 +0.2 210,653 + fdnI MCAODC_16565 0.49 -0.4 210,731 + fdnI MCAODC_16565 0.61 +0.7 210,839 + fdnI MCAODC_16565 0.77 +1.4 210,839 + fdnI MCAODC_16565 0.77 -0.5 210,839 + fdnI MCAODC_16565 0.77 +0.6 210,839 + fdnI MCAODC_16565 0.77 -0.5 210,840 - fdnI MCAODC_16565 0.78 -0.0 210,840 - fdnI MCAODC_16565 0.78 -2.2 210,843 + fdnI MCAODC_16565 0.78 -3.5 210,843 + fdnI MCAODC_16565 0.78 +0.6 210,843 + fdnI MCAODC_16565 0.78 +1.1 210,843 + fdnI MCAODC_16565 0.78 -0.2 210,843 + fdnI MCAODC_16565 0.78 -0.5 210,843 + fdnI MCAODC_16565 0.78 -1.0 210,984 + -0.6 210,984 + -0.1 210,984 + +1.5 211,043 + +0.3 211,044 - -1.5 211,052 + +2.1 211,053 - +0.3 211,053 - -0.7 211,336 + yddM MCAODC_16570 0.43 -0.0 211,462 + yddM MCAODC_16570 0.87 +1.5 211,462 + yddM MCAODC_16570 0.87 -1.5 211,463 - yddM MCAODC_16570 0.87 -0.2 211,463 - yddM MCAODC_16570 0.87 -1.4 211,579 - +0.2 211,786 - adhP MCAODC_16575 0.14 -1.3 211,786 - adhP MCAODC_16575 0.14 +0.8 211,862 + adhP MCAODC_16575 0.22 -0.7 211,945 - adhP MCAODC_16575 0.30 +0.3
Or see this region's nucleotide sequence