Experiment: WM_RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt galR and aas are separated by 585 nucleotides aas and lplT overlap by 8 nucleotides
MCAODC_10475: galR - HTH-type transcriptional regulator GalR, at 2,084,766 to 2,085,797
galR
MCAODC_10490: aas - bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase, at 2,086,383 to 2,088,542
aas
MCAODC_10495: lplT - lysophospholipid transporter LplT, at 2,088,535 to 2,089,728
lplT
Position (kb)
2086
2087
2088
2089 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2085.397 kb on - strand, within galR at 2085.405 kb on + strand, within galR at 2085.505 kb on + strand, within galR at 2085.523 kb on - strand, within galR at 2085.541 kb on + strand, within galR at 2085.541 kb on + strand, within galR at 2085.542 kb on - strand, within galR at 2085.664 kb on + strand, within galR at 2085.664 kb on + strand, within galR at 2085.665 kb on - strand, within galR at 2085.668 kb on + strand, within galR at 2085.668 kb on + strand, within galR at 2085.668 kb on + strand, within galR at 2085.668 kb on + strand, within galR at 2085.669 kb on - strand, within galR at 2085.669 kb on - strand, within galR at 2085.669 kb on - strand, within galR at 2085.686 kb on + strand, within galR at 2085.686 kb on + strand, within galR at 2085.687 kb on - strand, within galR at 2085.728 kb on + strand at 2085.729 kb on - strand at 2085.729 kb on - strand at 2085.729 kb on - strand at 2085.803 kb on + strand at 2085.803 kb on + strand at 2085.804 kb on - strand at 2085.823 kb on + strand at 2085.824 kb on - strand at 2085.906 kb on + strand at 2085.906 kb on + strand at 2085.907 kb on - strand at 2085.907 kb on - strand at 2086.000 kb on - strand at 2086.019 kb on + strand at 2086.019 kb on + strand at 2086.020 kb on - strand at 2086.020 kb on - strand at 2086.020 kb on - strand at 2086.025 kb on + strand at 2086.025 kb on + strand at 2086.025 kb on + strand at 2086.025 kb on + strand at 2086.026 kb on - strand at 2086.026 kb on - strand at 2086.026 kb on - strand at 2086.026 kb on - strand at 2086.060 kb on - strand at 2086.111 kb on - strand at 2086.128 kb on + strand at 2086.129 kb on - strand at 2086.216 kb on + strand at 2086.216 kb on + strand at 2086.217 kb on - strand at 2086.302 kb on + strand at 2086.327 kb on - strand at 2086.335 kb on + strand at 2086.335 kb on + strand at 2086.336 kb on - strand at 2086.357 kb on - strand at 2086.474 kb on + strand at 2086.478 kb on + strand at 2086.479 kb on - strand at 2086.479 kb on - strand at 2086.479 kb on - strand at 2086.485 kb on - strand at 2086.500 kb on - strand at 2086.529 kb on - strand at 2086.554 kb on + strand at 2086.554 kb on + strand at 2086.555 kb on - strand at 2086.578 kb on + strand at 2086.578 kb on + strand at 2086.578 kb on + strand at 2086.578 kb on + strand at 2086.578 kb on + strand at 2086.578 kb on + strand at 2086.579 kb on - strand at 2086.579 kb on - strand at 2086.579 kb on - strand at 2086.579 kb on - strand at 2086.580 kb on + strand at 2086.580 kb on + strand at 2086.580 kb on + strand at 2086.580 kb on + strand at 2086.580 kb on + strand at 2086.581 kb on - strand at 2086.581 kb on - strand at 2086.581 kb on - strand at 2086.601 kb on + strand, within aas at 2086.634 kb on + strand, within aas at 2086.655 kb on - strand, within aas at 2086.790 kb on + strand, within aas at 2086.809 kb on - strand, within aas at 2086.809 kb on - strand, within aas at 2086.838 kb on + strand, within aas at 2086.862 kb on + strand, within aas at 2086.863 kb on - strand, within aas at 2086.863 kb on - strand, within aas at 2086.863 kb on - strand, within aas at 2086.871 kb on + strand, within aas at 2087.001 kb on + strand, within aas at 2087.133 kb on + strand, within aas at 2087.134 kb on - strand, within aas at 2087.134 kb on - strand, within aas at 2087.241 kb on + strand, within aas at 2087.241 kb on + strand, within aas at 2087.241 kb on + strand, within aas at 2087.242 kb on - strand, within aas at 2087.273 kb on + strand, within aas at 2087.273 kb on + strand, within aas at 2087.277 kb on - strand, within aas at 2087.357 kb on + strand, within aas at 2087.358 kb on - strand, within aas at 2087.365 kb on + strand, within aas at 2087.365 kb on + strand, within aas at 2087.365 kb on + strand, within aas at 2087.377 kb on - strand, within aas at 2087.390 kb on - strand, within aas at 2087.419 kb on + strand, within aas at 2087.419 kb on + strand, within aas at 2087.498 kb on + strand, within aas at 2087.498 kb on + strand, within aas at 2087.543 kb on + strand, within aas at 2087.543 kb on + strand, within aas at 2087.544 kb on - strand, within aas at 2087.610 kb on - strand, within aas at 2087.661 kb on - strand, within aas at 2087.695 kb on - strand, within aas at 2087.712 kb on + strand, within aas at 2087.717 kb on + strand, within aas at 2087.718 kb on - strand, within aas at 2087.736 kb on + strand, within aas at 2087.737 kb on - strand, within aas at 2087.737 kb on - strand, within aas at 2087.808 kb on + strand, within aas at 2087.809 kb on - strand, within aas at 2087.817 kb on + strand, within aas at 2087.824 kb on + strand, within aas at 2087.829 kb on + strand, within aas at 2087.829 kb on + strand, within aas at 2087.830 kb on - strand, within aas at 2087.830 kb on - strand, within aas at 2087.854 kb on + strand, within aas at 2087.864 kb on + strand, within aas at 2087.945 kb on + strand, within aas at 2087.946 kb on - strand, within aas at 2087.946 kb on - strand, within aas at 2087.946 kb on - strand, within aas at 2087.953 kb on + strand, within aas at 2087.954 kb on - strand, within aas at 2087.987 kb on + strand, within aas at 2087.988 kb on - strand, within aas at 2087.992 kb on + strand, within aas at 2087.993 kb on - strand, within aas at 2087.993 kb on - strand, within aas at 2088.070 kb on + strand, within aas at 2088.070 kb on + strand, within aas at 2088.071 kb on - strand, within aas at 2088.071 kb on - strand, within aas at 2088.071 kb on - strand, within aas at 2088.071 kb on - strand, within aas at 2088.081 kb on + strand, within aas at 2088.106 kb on + strand, within aas at 2088.160 kb on - strand, within aas at 2088.299 kb on + strand, within aas at 2088.299 kb on + strand, within aas at 2088.300 kb on - strand, within aas at 2088.320 kb on + strand, within aas at 2088.369 kb on - strand at 2088.399 kb on + strand at 2088.399 kb on + strand at 2088.399 kb on + strand at 2088.400 kb on - strand at 2088.433 kb on + strand at 2088.451 kb on - strand at 2088.469 kb on + strand at 2088.470 kb on - strand at 2088.671 kb on - strand, within lplT at 2088.711 kb on - strand, within lplT at 2088.718 kb on + strand, within lplT at 2088.718 kb on + strand, within lplT at 2088.718 kb on + strand, within lplT at 2088.718 kb on + strand, within lplT at 2088.719 kb on - strand, within lplT at 2088.719 kb on - strand, within lplT at 2088.756 kb on + strand, within lplT at 2088.820 kb on - strand, within lplT at 2088.832 kb on - strand, within lplT at 2088.852 kb on + strand, within lplT at 2088.852 kb on + strand, within lplT at 2088.853 kb on - strand, within lplT at 2088.895 kb on + strand, within lplT at 2088.895 kb on + strand, within lplT at 2088.896 kb on - strand, within lplT at 2088.914 kb on + strand, within lplT at 2088.927 kb on + strand, within lplT at 2088.928 kb on - strand, within lplT at 2088.928 kb on - strand, within lplT at 2088.928 kb on - strand, within lplT at 2088.928 kb on - strand, within lplT at 2088.932 kb on + strand, within lplT at 2088.936 kb on - strand, within lplT at 2088.936 kb on - strand, within lplT at 2088.950 kb on + strand, within lplT at 2088.951 kb on - strand, within lplT at 2088.964 kb on - strand, within lplT at 2088.964 kb on - strand, within lplT at 2089.054 kb on + strand, within lplT at 2089.078 kb on - strand, within lplT at 2089.082 kb on - strand, within lplT at 2089.082 kb on - strand, within lplT at 2089.214 kb on + strand, within lplT at 2089.293 kb on + strand, within lplT at 2089.303 kb on + strand, within lplT at 2089.304 kb on - strand, within lplT at 2089.304 kb on - strand, within lplT at 2089.319 kb on + strand, within lplT at 2089.329 kb on + strand, within lplT at 2089.329 kb on + strand, within lplT at 2089.389 kb on + strand, within lplT at 2089.390 kb on - strand, within lplT at 2089.459 kb on + strand, within lplT at 2089.459 kb on + strand, within lplT at 2089.460 kb on - strand, within lplT
Per-strain Table
Position Strand Gene LocusTag Fraction WM_RB68 remove 2,085,397 - galR MCAODC_10475 0.61 +0.0 2,085,405 + galR MCAODC_10475 0.62 -0.6 2,085,505 + galR MCAODC_10475 0.72 +1.4 2,085,523 - galR MCAODC_10475 0.73 +1.4 2,085,541 + galR MCAODC_10475 0.75 +0.5 2,085,541 + galR MCAODC_10475 0.75 +0.4 2,085,542 - galR MCAODC_10475 0.75 -0.2 2,085,664 + galR MCAODC_10475 0.87 -1.3 2,085,664 + galR MCAODC_10475 0.87 +0.8 2,085,665 - galR MCAODC_10475 0.87 -0.6 2,085,668 + galR MCAODC_10475 0.87 +0.4 2,085,668 + galR MCAODC_10475 0.87 +1.5 2,085,668 + galR MCAODC_10475 0.87 -0.5 2,085,668 + galR MCAODC_10475 0.87 -0.7 2,085,669 - galR MCAODC_10475 0.88 +0.4 2,085,669 - galR MCAODC_10475 0.88 +0.0 2,085,669 - galR MCAODC_10475 0.88 -0.2 2,085,686 + galR MCAODC_10475 0.89 +0.4 2,085,686 + galR MCAODC_10475 0.89 -2.0 2,085,687 - galR MCAODC_10475 0.89 +0.7 2,085,728 + -0.5 2,085,729 - -0.8 2,085,729 - -0.4 2,085,729 - +1.3 2,085,803 + +0.4 2,085,803 + +0.1 2,085,804 - -0.5 2,085,823 + -0.0 2,085,824 - +0.2 2,085,906 + -0.0 2,085,906 + +0.3 2,085,907 - -0.2 2,085,907 - +0.3 2,086,000 - -0.6 2,086,019 + +0.9 2,086,019 + +0.4 2,086,020 - -0.5 2,086,020 - -0.4 2,086,020 - +0.6 2,086,025 + +1.9 2,086,025 + +0.0 2,086,025 + -1.4 2,086,025 + -1.2 2,086,026 - -0.7 2,086,026 - +1.0 2,086,026 - +0.1 2,086,026 - +0.5 2,086,060 - +1.0 2,086,111 - +0.7 2,086,128 + +0.9 2,086,129 - +1.4 2,086,216 + +1.6 2,086,216 + +0.6 2,086,217 - +1.0 2,086,302 + +0.6 2,086,327 - +0.6 2,086,335 + +0.2 2,086,335 + +0.2 2,086,336 - -0.0 2,086,357 - -0.6 2,086,474 + +0.6 2,086,478 + +0.7 2,086,479 - +0.4 2,086,479 - -0.5 2,086,479 - -0.5 2,086,485 - +0.1 2,086,500 - +0.3 2,086,529 - +0.4 2,086,554 + -0.5 2,086,554 + +0.1 2,086,555 - +1.4 2,086,578 + -0.7 2,086,578 + +1.0 2,086,578 + -0.6 2,086,578 + -0.7 2,086,578 + +0.8 2,086,578 + +0.2 2,086,579 - -0.5 2,086,579 - -0.6 2,086,579 - -0.6 2,086,579 - +3.5 2,086,580 + +0.4 2,086,580 + -0.5 2,086,580 + +0.7 2,086,580 + +1.7 2,086,580 + +0.0 2,086,581 - +0.0 2,086,581 - -1.5 2,086,581 - -0.7 2,086,601 + aas MCAODC_10490 0.10 -0.0 2,086,634 + aas MCAODC_10490 0.12 -0.5 2,086,655 - aas MCAODC_10490 0.13 +1.1 2,086,790 + aas MCAODC_10490 0.19 +0.1 2,086,809 - aas MCAODC_10490 0.20 -0.1 2,086,809 - aas MCAODC_10490 0.20 +0.0 2,086,838 + aas MCAODC_10490 0.21 -0.4 2,086,862 + aas MCAODC_10490 0.22 +0.5 2,086,863 - aas MCAODC_10490 0.22 +0.1 2,086,863 - aas MCAODC_10490 0.22 +0.2 2,086,863 - aas MCAODC_10490 0.22 +0.4 2,086,871 + aas MCAODC_10490 0.23 -1.0 2,087,001 + aas MCAODC_10490 0.29 +1.5 2,087,133 + aas MCAODC_10490 0.35 -1.7 2,087,134 - aas MCAODC_10490 0.35 -1.7 2,087,134 - aas MCAODC_10490 0.35 +0.5 2,087,241 + aas MCAODC_10490 0.40 -0.0 2,087,241 + aas MCAODC_10490 0.40 +0.3 2,087,241 + aas MCAODC_10490 0.40 +0.5 2,087,242 - aas MCAODC_10490 0.40 +0.8 2,087,273 + aas MCAODC_10490 0.41 +0.1 2,087,273 + aas MCAODC_10490 0.41 -0.2 2,087,277 - aas MCAODC_10490 0.41 -0.7 2,087,357 + aas MCAODC_10490 0.45 -0.1 2,087,358 - aas MCAODC_10490 0.45 +2.1 2,087,365 + aas MCAODC_10490 0.45 +1.1 2,087,365 + aas MCAODC_10490 0.45 -1.4 2,087,365 + aas MCAODC_10490 0.45 +2.2 2,087,377 - aas MCAODC_10490 0.46 +0.1 2,087,390 - aas MCAODC_10490 0.47 -0.4 2,087,419 + aas MCAODC_10490 0.48 -0.7 2,087,419 + aas MCAODC_10490 0.48 -1.6 2,087,498 + aas MCAODC_10490 0.52 -0.9 2,087,498 + aas MCAODC_10490 0.52 +0.7 2,087,543 + aas MCAODC_10490 0.54 +0.5 2,087,543 + aas MCAODC_10490 0.54 -0.4 2,087,544 - aas MCAODC_10490 0.54 +0.3 2,087,610 - aas MCAODC_10490 0.57 +0.2 2,087,661 - aas MCAODC_10490 0.59 -1.2 2,087,695 - aas MCAODC_10490 0.61 +0.4 2,087,712 + aas MCAODC_10490 0.62 +0.2 2,087,717 + aas MCAODC_10490 0.62 +0.4 2,087,718 - aas MCAODC_10490 0.62 +0.0 2,087,736 + aas MCAODC_10490 0.63 +0.3 2,087,737 - aas MCAODC_10490 0.63 -1.1 2,087,737 - aas MCAODC_10490 0.63 +1.2 2,087,808 + aas MCAODC_10490 0.66 +0.3 2,087,809 - aas MCAODC_10490 0.66 -0.4 2,087,817 + aas MCAODC_10490 0.66 -0.8 2,087,824 + aas MCAODC_10490 0.67 +0.0 2,087,829 + aas MCAODC_10490 0.67 +0.1 2,087,829 + aas MCAODC_10490 0.67 -0.2 2,087,830 - aas MCAODC_10490 0.67 -0.2 2,087,830 - aas MCAODC_10490 0.67 -0.2 2,087,854 + aas MCAODC_10490 0.68 -0.4 2,087,864 + aas MCAODC_10490 0.69 -3.1 2,087,945 + aas MCAODC_10490 0.72 +0.4 2,087,946 - aas MCAODC_10490 0.72 -0.9 2,087,946 - aas MCAODC_10490 0.72 +0.8 2,087,946 - aas MCAODC_10490 0.72 -1.2 2,087,953 + aas MCAODC_10490 0.73 +0.5 2,087,954 - aas MCAODC_10490 0.73 +0.3 2,087,987 + aas MCAODC_10490 0.74 +0.6 2,087,988 - aas MCAODC_10490 0.74 +0.7 2,087,992 + aas MCAODC_10490 0.74 +0.4 2,087,993 - aas MCAODC_10490 0.75 +0.2 2,087,993 - aas MCAODC_10490 0.75 -0.5 2,088,070 + aas MCAODC_10490 0.78 -0.3 2,088,070 + aas MCAODC_10490 0.78 +0.7 2,088,071 - aas MCAODC_10490 0.78 -1.0 2,088,071 - aas MCAODC_10490 0.78 +0.2 2,088,071 - aas MCAODC_10490 0.78 -0.0 2,088,071 - aas MCAODC_10490 0.78 +0.5 2,088,081 + aas MCAODC_10490 0.79 +0.3 2,088,106 + aas MCAODC_10490 0.80 +0.0 2,088,160 - aas MCAODC_10490 0.82 -0.5 2,088,299 + aas MCAODC_10490 0.89 +1.5 2,088,299 + aas MCAODC_10490 0.89 +1.5 2,088,300 - aas MCAODC_10490 0.89 -0.1 2,088,320 + aas MCAODC_10490 0.90 +3.2 2,088,369 - +0.3 2,088,399 + -0.1 2,088,399 + +0.7 2,088,399 + +0.7 2,088,400 - +0.3 2,088,433 + +0.0 2,088,451 - -0.2 2,088,469 + +0.7 2,088,470 - +0.3 2,088,671 - lplT MCAODC_10495 0.11 -0.5 2,088,711 - lplT MCAODC_10495 0.15 -0.5 2,088,718 + lplT MCAODC_10495 0.15 -0.0 2,088,718 + lplT MCAODC_10495 0.15 +2.2 2,088,718 + lplT MCAODC_10495 0.15 -2.8 2,088,718 + lplT MCAODC_10495 0.15 +0.2 2,088,719 - lplT MCAODC_10495 0.15 +0.0 2,088,719 - lplT MCAODC_10495 0.15 -0.9 2,088,756 + lplT MCAODC_10495 0.19 +0.2 2,088,820 - lplT MCAODC_10495 0.24 -0.6 2,088,832 - lplT MCAODC_10495 0.25 -2.1 2,088,852 + lplT MCAODC_10495 0.27 -0.1 2,088,852 + lplT MCAODC_10495 0.27 +2.0 2,088,853 - lplT MCAODC_10495 0.27 -0.1 2,088,895 + lplT MCAODC_10495 0.30 -0.3 2,088,895 + lplT MCAODC_10495 0.30 -0.1 2,088,896 - lplT MCAODC_10495 0.30 -1.0 2,088,914 + lplT MCAODC_10495 0.32 -0.1 2,088,927 + lplT MCAODC_10495 0.33 -0.7 2,088,928 - lplT MCAODC_10495 0.33 +0.5 2,088,928 - lplT MCAODC_10495 0.33 +0.5 2,088,928 - lplT MCAODC_10495 0.33 -1.3 2,088,928 - lplT MCAODC_10495 0.33 +0.9 2,088,932 + lplT MCAODC_10495 0.33 -0.9 2,088,936 - lplT MCAODC_10495 0.34 -2.4 2,088,936 - lplT MCAODC_10495 0.34 -0.8 2,088,950 + lplT MCAODC_10495 0.35 +1.5 2,088,951 - lplT MCAODC_10495 0.35 +0.1 2,088,964 - lplT MCAODC_10495 0.36 -0.4 2,088,964 - lplT MCAODC_10495 0.36 +1.8 2,089,054 + lplT MCAODC_10495 0.43 +0.2 2,089,078 - lplT MCAODC_10495 0.45 +0.5 2,089,082 - lplT MCAODC_10495 0.46 -0.1 2,089,082 - lplT MCAODC_10495 0.46 +0.1 2,089,214 + lplT MCAODC_10495 0.57 +0.2 2,089,293 + lplT MCAODC_10495 0.63 -0.8 2,089,303 + lplT MCAODC_10495 0.64 -2.7 2,089,304 - lplT MCAODC_10495 0.64 +0.4 2,089,304 - lplT MCAODC_10495 0.64 +0.8 2,089,319 + lplT MCAODC_10495 0.66 +2.5 2,089,329 + lplT MCAODC_10495 0.66 -0.8 2,089,329 + lplT MCAODC_10495 0.66 +0.2 2,089,389 + lplT MCAODC_10495 0.72 +2.2 2,089,390 - lplT MCAODC_10495 0.72 -0.7 2,089,459 + lplT MCAODC_10495 0.77 -0.3 2,089,459 + lplT MCAODC_10495 0.77 +0.5 2,089,460 - lplT MCAODC_10495 0.77 -0.2
Or see this region's nucleotide sequence