Experiment: WM_RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt exuR and exuT are separated by 129 nucleotides exuT and uxaC are separated by 482 nucleotides
MCAODC_09025: exuR - transcriptional regulator ExuR, at 1,797,706 to 1,798,482
exuR
MCAODC_09030: exuT - hexuronate transporter ExuT, at 1,798,612 to 1,799,910
exuT
MCAODC_09035: uxaC - glucuronate isomerase, at 1,800,393 to 1,801,805
uxaC
Position (kb)
1798
1799
1800 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1797.628 kb on + strand at 1797.629 kb on - strand at 1797.629 kb on - strand at 1797.647 kb on + strand at 1797.647 kb on + strand at 1797.647 kb on + strand at 1797.702 kb on + strand at 1797.712 kb on - strand at 1797.764 kb on + strand at 1797.765 kb on - strand at 1797.808 kb on + strand, within exuR at 1797.809 kb on - strand, within exuR at 1797.852 kb on + strand, within exuR at 1797.853 kb on - strand, within exuR at 1797.967 kb on - strand, within exuR at 1797.972 kb on + strand, within exuR at 1797.973 kb on - strand, within exuR at 1798.042 kb on - strand, within exuR at 1798.136 kb on - strand, within exuR at 1798.162 kb on - strand, within exuR at 1798.209 kb on - strand, within exuR at 1798.224 kb on + strand, within exuR at 1798.228 kb on - strand, within exuR at 1798.228 kb on - strand, within exuR at 1798.228 kb on - strand, within exuR at 1798.276 kb on - strand, within exuR at 1798.288 kb on - strand, within exuR at 1798.288 kb on - strand, within exuR at 1798.301 kb on + strand, within exuR at 1798.301 kb on + strand, within exuR at 1798.301 kb on + strand, within exuR at 1798.301 kb on + strand, within exuR at 1798.302 kb on - strand, within exuR at 1798.302 kb on - strand, within exuR at 1798.302 kb on - strand, within exuR at 1798.340 kb on - strand, within exuR at 1798.392 kb on + strand, within exuR at 1798.406 kb on + strand at 1798.407 kb on - strand at 1798.454 kb on + strand at 1798.512 kb on + strand at 1798.513 kb on - strand at 1798.519 kb on + strand at 1798.521 kb on + strand at 1798.522 kb on - strand at 1798.544 kb on + strand at 1798.545 kb on - strand at 1798.594 kb on + strand at 1798.595 kb on - strand at 1798.635 kb on + strand at 1798.636 kb on - strand at 1798.636 kb on - strand at 1798.636 kb on - strand at 1798.679 kb on - strand at 1798.690 kb on - strand at 1798.788 kb on + strand, within exuT at 1798.788 kb on + strand, within exuT at 1798.789 kb on - strand, within exuT at 1798.789 kb on - strand, within exuT at 1798.870 kb on - strand, within exuT at 1798.911 kb on + strand, within exuT at 1798.923 kb on + strand, within exuT at 1798.923 kb on + strand, within exuT at 1798.923 kb on + strand, within exuT at 1798.923 kb on + strand, within exuT at 1798.924 kb on - strand, within exuT at 1798.934 kb on + strand, within exuT at 1798.935 kb on - strand, within exuT at 1798.935 kb on - strand, within exuT at 1798.960 kb on - strand, within exuT at 1798.994 kb on - strand, within exuT at 1799.004 kb on + strand, within exuT at 1799.070 kb on + strand, within exuT at 1799.070 kb on + strand, within exuT at 1799.070 kb on + strand, within exuT at 1799.272 kb on - strand, within exuT at 1799.302 kb on - strand, within exuT at 1799.304 kb on + strand, within exuT at 1799.305 kb on - strand, within exuT at 1799.307 kb on + strand, within exuT at 1799.307 kb on + strand, within exuT at 1799.307 kb on + strand, within exuT at 1799.307 kb on + strand, within exuT at 1799.308 kb on - strand, within exuT at 1799.308 kb on - strand, within exuT at 1799.308 kb on - strand, within exuT at 1799.308 kb on - strand, within exuT at 1799.308 kb on - strand, within exuT at 1799.308 kb on - strand, within exuT at 1799.308 kb on - strand, within exuT at 1799.309 kb on + strand, within exuT at 1799.310 kb on - strand, within exuT at 1799.310 kb on - strand, within exuT at 1799.356 kb on - strand, within exuT at 1799.358 kb on - strand, within exuT at 1799.385 kb on + strand, within exuT at 1799.409 kb on + strand, within exuT at 1799.409 kb on + strand, within exuT at 1799.409 kb on + strand, within exuT at 1799.410 kb on - strand, within exuT at 1799.410 kb on - strand, within exuT at 1799.410 kb on - strand, within exuT at 1799.410 kb on - strand, within exuT at 1799.446 kb on + strand, within exuT at 1799.488 kb on + strand, within exuT at 1799.488 kb on + strand, within exuT at 1799.488 kb on + strand, within exuT at 1799.488 kb on + strand, within exuT at 1799.488 kb on + strand, within exuT at 1799.489 kb on - strand, within exuT at 1799.489 kb on - strand, within exuT at 1799.499 kb on - strand, within exuT at 1799.622 kb on + strand, within exuT at 1799.622 kb on + strand, within exuT at 1799.623 kb on - strand, within exuT at 1799.707 kb on + strand, within exuT at 1799.708 kb on - strand, within exuT at 1799.711 kb on + strand, within exuT at 1799.711 kb on + strand, within exuT at 1799.711 kb on + strand, within exuT at 1799.712 kb on - strand, within exuT at 1799.712 kb on - strand, within exuT at 1799.712 kb on - strand, within exuT at 1799.712 kb on - strand, within exuT at 1799.712 kb on - strand, within exuT at 1799.712 kb on - strand, within exuT at 1799.712 kb on - strand, within exuT at 1799.736 kb on + strand, within exuT at 1799.736 kb on + strand, within exuT at 1799.738 kb on + strand, within exuT at 1799.739 kb on - strand, within exuT at 1799.739 kb on - strand, within exuT at 1799.739 kb on - strand, within exuT at 1799.751 kb on - strand, within exuT at 1799.763 kb on + strand, within exuT at 1799.764 kb on - strand, within exuT at 1799.764 kb on - strand, within exuT at 1799.764 kb on - strand, within exuT at 1799.765 kb on + strand, within exuT at 1799.765 kb on + strand, within exuT at 1799.765 kb on + strand, within exuT at 1799.765 kb on + strand, within exuT at 1799.765 kb on + strand, within exuT at 1799.766 kb on - strand, within exuT at 1799.766 kb on - strand, within exuT at 1799.766 kb on - strand, within exuT at 1799.766 kb on - strand, within exuT at 1799.766 kb on - strand, within exuT at 1799.771 kb on + strand, within exuT at 1799.772 kb on - strand, within exuT at 1799.791 kb on + strand at 1799.791 kb on + strand at 1799.792 kb on - strand at 1799.832 kb on + strand at 1799.881 kb on - strand at 1799.883 kb on - strand at 1799.904 kb on + strand at 1799.912 kb on + strand at 1799.912 kb on + strand at 1799.913 kb on - strand at 1799.934 kb on - strand at 1799.934 kb on - strand at 1799.934 kb on - strand at 1799.979 kb on + strand at 1799.979 kb on + strand at 1799.979 kb on + strand at 1799.979 kb on + strand at 1799.979 kb on + strand at 1799.979 kb on + strand at 1799.980 kb on - strand at 1799.983 kb on + strand at 1800.079 kb on + strand at 1800.079 kb on + strand at 1800.079 kb on + strand at 1800.080 kb on - strand at 1800.080 kb on - strand at 1800.279 kb on + strand at 1800.334 kb on + strand at 1800.357 kb on - strand at 1800.404 kb on + strand at 1800.424 kb on + strand at 1800.424 kb on + strand at 1800.424 kb on + strand at 1800.424 kb on + strand at 1800.424 kb on + strand at 1800.424 kb on + strand at 1800.425 kb on - strand at 1800.425 kb on - strand at 1800.425 kb on - strand at 1800.425 kb on - strand at 1800.487 kb on - strand at 1800.525 kb on + strand at 1800.543 kb on + strand, within uxaC at 1800.543 kb on + strand, within uxaC at 1800.591 kb on - strand, within uxaC at 1800.691 kb on + strand, within uxaC at 1800.691 kb on + strand, within uxaC at 1800.693 kb on + strand, within uxaC at 1800.693 kb on + strand, within uxaC at 1800.693 kb on + strand, within uxaC at 1800.693 kb on + strand, within uxaC at 1800.806 kb on + strand, within uxaC
Per-strain Table
Position Strand Gene LocusTag Fraction WM_RB68 remove 1,797,628 + -0.4 1,797,629 - -0.2 1,797,629 - -0.1 1,797,647 + -1.0 1,797,647 + +0.0 1,797,647 + -0.5 1,797,702 + -0.5 1,797,712 - -0.4 1,797,764 + -1.2 1,797,765 - -0.2 1,797,808 + exuR MCAODC_09025 0.13 -0.5 1,797,809 - exuR MCAODC_09025 0.13 -1.0 1,797,852 + exuR MCAODC_09025 0.19 -0.6 1,797,853 - exuR MCAODC_09025 0.19 -0.2 1,797,967 - exuR MCAODC_09025 0.34 +0.1 1,797,972 + exuR MCAODC_09025 0.34 +1.1 1,797,973 - exuR MCAODC_09025 0.34 +0.2 1,798,042 - exuR MCAODC_09025 0.43 -1.3 1,798,136 - exuR MCAODC_09025 0.55 -0.1 1,798,162 - exuR MCAODC_09025 0.59 -0.6 1,798,209 - exuR MCAODC_09025 0.65 +0.0 1,798,224 + exuR MCAODC_09025 0.67 +0.9 1,798,228 - exuR MCAODC_09025 0.67 -0.5 1,798,228 - exuR MCAODC_09025 0.67 +1.1 1,798,228 - exuR MCAODC_09025 0.67 -0.1 1,798,276 - exuR MCAODC_09025 0.73 -1.1 1,798,288 - exuR MCAODC_09025 0.75 +0.2 1,798,288 - exuR MCAODC_09025 0.75 -0.0 1,798,301 + exuR MCAODC_09025 0.77 +0.1 1,798,301 + exuR MCAODC_09025 0.77 -0.3 1,798,301 + exuR MCAODC_09025 0.77 -1.6 1,798,301 + exuR MCAODC_09025 0.77 +0.2 1,798,302 - exuR MCAODC_09025 0.77 -0.2 1,798,302 - exuR MCAODC_09025 0.77 -0.1 1,798,302 - exuR MCAODC_09025 0.77 +0.1 1,798,340 - exuR MCAODC_09025 0.82 -0.7 1,798,392 + exuR MCAODC_09025 0.88 +0.4 1,798,406 + +0.1 1,798,407 - +0.9 1,798,454 + +0.2 1,798,512 + -0.8 1,798,513 - -0.5 1,798,519 + -0.3 1,798,521 + -1.0 1,798,522 - -0.4 1,798,544 + +0.8 1,798,545 - -0.1 1,798,594 + -0.2 1,798,595 - -1.4 1,798,635 + -0.2 1,798,636 - -0.1 1,798,636 - +0.6 1,798,636 - -0.6 1,798,679 - +0.8 1,798,690 - +0.3 1,798,788 + exuT MCAODC_09030 0.14 +1.2 1,798,788 + exuT MCAODC_09030 0.14 +0.6 1,798,789 - exuT MCAODC_09030 0.14 +0.4 1,798,789 - exuT MCAODC_09030 0.14 -1.3 1,798,870 - exuT MCAODC_09030 0.20 -0.6 1,798,911 + exuT MCAODC_09030 0.23 -0.8 1,798,923 + exuT MCAODC_09030 0.24 -0.5 1,798,923 + exuT MCAODC_09030 0.24 -0.4 1,798,923 + exuT MCAODC_09030 0.24 +0.1 1,798,923 + exuT MCAODC_09030 0.24 -1.2 1,798,924 - exuT MCAODC_09030 0.24 +0.0 1,798,934 + exuT MCAODC_09030 0.25 -0.4 1,798,935 - exuT MCAODC_09030 0.25 -0.3 1,798,935 - exuT MCAODC_09030 0.25 -2.3 1,798,960 - exuT MCAODC_09030 0.27 +1.2 1,798,994 - exuT MCAODC_09030 0.29 +0.6 1,799,004 + exuT MCAODC_09030 0.30 -0.1 1,799,070 + exuT MCAODC_09030 0.35 -0.2 1,799,070 + exuT MCAODC_09030 0.35 +0.0 1,799,070 + exuT MCAODC_09030 0.35 -0.2 1,799,272 - exuT MCAODC_09030 0.51 +0.8 1,799,302 - exuT MCAODC_09030 0.53 +0.8 1,799,304 + exuT MCAODC_09030 0.53 -0.6 1,799,305 - exuT MCAODC_09030 0.53 +0.7 1,799,307 + exuT MCAODC_09030 0.54 -0.0 1,799,307 + exuT MCAODC_09030 0.54 +0.5 1,799,307 + exuT MCAODC_09030 0.54 +1.3 1,799,307 + exuT MCAODC_09030 0.54 +0.3 1,799,308 - exuT MCAODC_09030 0.54 -1.5 1,799,308 - exuT MCAODC_09030 0.54 +0.3 1,799,308 - exuT MCAODC_09030 0.54 -1.2 1,799,308 - exuT MCAODC_09030 0.54 -0.7 1,799,308 - exuT MCAODC_09030 0.54 -0.8 1,799,308 - exuT MCAODC_09030 0.54 +1.1 1,799,308 - exuT MCAODC_09030 0.54 +0.3 1,799,309 + exuT MCAODC_09030 0.54 +0.9 1,799,310 - exuT MCAODC_09030 0.54 -0.9 1,799,310 - exuT MCAODC_09030 0.54 +0.9 1,799,356 - exuT MCAODC_09030 0.57 +0.9 1,799,358 - exuT MCAODC_09030 0.57 -0.1 1,799,385 + exuT MCAODC_09030 0.60 +0.4 1,799,409 + exuT MCAODC_09030 0.61 +0.5 1,799,409 + exuT MCAODC_09030 0.61 +1.9 1,799,409 + exuT MCAODC_09030 0.61 +0.5 1,799,410 - exuT MCAODC_09030 0.61 -0.2 1,799,410 - exuT MCAODC_09030 0.61 -0.8 1,799,410 - exuT MCAODC_09030 0.61 +1.7 1,799,410 - exuT MCAODC_09030 0.61 +0.1 1,799,446 + exuT MCAODC_09030 0.64 -0.7 1,799,488 + exuT MCAODC_09030 0.67 -1.9 1,799,488 + exuT MCAODC_09030 0.67 -0.2 1,799,488 + exuT MCAODC_09030 0.67 +0.5 1,799,488 + exuT MCAODC_09030 0.67 -2.1 1,799,488 + exuT MCAODC_09030 0.67 +1.2 1,799,489 - exuT MCAODC_09030 0.68 +1.4 1,799,489 - exuT MCAODC_09030 0.68 -0.0 1,799,499 - exuT MCAODC_09030 0.68 -0.1 1,799,622 + exuT MCAODC_09030 0.78 -0.7 1,799,622 + exuT MCAODC_09030 0.78 -1.1 1,799,623 - exuT MCAODC_09030 0.78 +0.4 1,799,707 + exuT MCAODC_09030 0.84 -0.3 1,799,708 - exuT MCAODC_09030 0.84 -0.1 1,799,711 + exuT MCAODC_09030 0.85 -0.6 1,799,711 + exuT MCAODC_09030 0.85 +1.1 1,799,711 + exuT MCAODC_09030 0.85 +0.1 1,799,712 - exuT MCAODC_09030 0.85 +0.5 1,799,712 - exuT MCAODC_09030 0.85 +0.8 1,799,712 - exuT MCAODC_09030 0.85 -1.4 1,799,712 - exuT MCAODC_09030 0.85 -0.2 1,799,712 - exuT MCAODC_09030 0.85 +0.0 1,799,712 - exuT MCAODC_09030 0.85 -0.4 1,799,712 - exuT MCAODC_09030 0.85 -0.9 1,799,736 + exuT MCAODC_09030 0.87 -3.3 1,799,736 + exuT MCAODC_09030 0.87 +0.1 1,799,738 + exuT MCAODC_09030 0.87 -0.2 1,799,739 - exuT MCAODC_09030 0.87 -0.0 1,799,739 - exuT MCAODC_09030 0.87 +0.1 1,799,739 - exuT MCAODC_09030 0.87 -1.1 1,799,751 - exuT MCAODC_09030 0.88 +0.6 1,799,763 + exuT MCAODC_09030 0.89 -0.3 1,799,764 - exuT MCAODC_09030 0.89 -0.2 1,799,764 - exuT MCAODC_09030 0.89 +0.6 1,799,764 - exuT MCAODC_09030 0.89 -0.0 1,799,765 + exuT MCAODC_09030 0.89 -0.7 1,799,765 + exuT MCAODC_09030 0.89 +1.0 1,799,765 + exuT MCAODC_09030 0.89 -0.3 1,799,765 + exuT MCAODC_09030 0.89 +1.3 1,799,765 + exuT MCAODC_09030 0.89 +0.4 1,799,766 - exuT MCAODC_09030 0.89 -0.2 1,799,766 - exuT MCAODC_09030 0.89 -0.3 1,799,766 - exuT MCAODC_09030 0.89 +0.1 1,799,766 - exuT MCAODC_09030 0.89 +0.3 1,799,766 - exuT MCAODC_09030 0.89 -0.9 1,799,771 + exuT MCAODC_09030 0.89 +0.2 1,799,772 - exuT MCAODC_09030 0.89 -0.2 1,799,791 + -0.9 1,799,791 + -1.0 1,799,792 - +2.1 1,799,832 + -0.9 1,799,881 - +0.7 1,799,883 - +0.3 1,799,904 + +0.3 1,799,912 + -0.3 1,799,912 + -0.6 1,799,913 - +0.8 1,799,934 - -0.4 1,799,934 - +1.0 1,799,934 - -1.0 1,799,979 + +0.8 1,799,979 + +0.2 1,799,979 + +0.0 1,799,979 + +0.2 1,799,979 + +0.9 1,799,979 + +0.7 1,799,980 - +0.2 1,799,983 + +2.1 1,800,079 + +0.1 1,800,079 + +1.7 1,800,079 + -0.2 1,800,080 - -0.9 1,800,080 - +1.1 1,800,279 + +0.5 1,800,334 + +0.6 1,800,357 - +1.1 1,800,404 + +0.2 1,800,424 + +0.6 1,800,424 + -0.2 1,800,424 + +0.0 1,800,424 + +1.9 1,800,424 + +0.1 1,800,424 + -1.5 1,800,425 - +2.5 1,800,425 - +0.1 1,800,425 - -0.8 1,800,425 - -1.9 1,800,487 - -1.7 1,800,525 + +0.3 1,800,543 + uxaC MCAODC_09035 0.11 +0.7 1,800,543 + uxaC MCAODC_09035 0.11 +1.7 1,800,591 - uxaC MCAODC_09035 0.14 +2.1 1,800,691 + uxaC MCAODC_09035 0.21 +1.8 1,800,691 + uxaC MCAODC_09035 0.21 +0.7 1,800,693 + uxaC MCAODC_09035 0.21 -1.6 1,800,693 + uxaC MCAODC_09035 0.21 +0.6 1,800,693 + uxaC MCAODC_09035 0.21 +0.7 1,800,693 + uxaC MCAODC_09035 0.21 -0.9 1,800,806 + uxaC MCAODC_09035 0.29 +1.1
Or see this region's nucleotide sequence