Experiment: WM_RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yhdY and yhdX are separated by 9 nucleotides yhdX and yhdW are separated by 67 nucleotides
MCAODC_08145: yhdY - Inner membrane amino-acid ABC transporter permease protein YhdY, at 1,628,762 to 1,629,865
yhdY
MCAODC_08150: yhdX - Putative amino-acid ABC transporter permease protein YhdX, at 1,629,875 to 1,631,056
yhdX
MCAODC_08155: yhdW - Putative amino-acid ABC transporter-binding protein YhdW, at 1,631,124 to 1,632,149
yhdW
Position (kb) 1629
1630
1631
1632 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1628.984 kb on - strand, within yhdY at 1628.987 kb on + strand, within yhdY at 1629.082 kb on - strand, within yhdY at 1629.091 kb on + strand, within yhdY at 1629.104 kb on + strand, within yhdY at 1629.105 kb on - strand, within yhdY at 1629.132 kb on + strand, within yhdY at 1629.132 kb on + strand, within yhdY at 1629.132 kb on + strand, within yhdY at 1629.132 kb on + strand, within yhdY at 1629.132 kb on + strand, within yhdY at 1629.133 kb on - strand, within yhdY at 1629.133 kb on - strand, within yhdY at 1629.229 kb on + strand, within yhdY at 1629.230 kb on - strand, within yhdY at 1629.230 kb on - strand, within yhdY at 1629.230 kb on - strand, within yhdY at 1629.242 kb on - strand, within yhdY at 1629.285 kb on - strand, within yhdY at 1629.285 kb on - strand, within yhdY at 1629.321 kb on - strand, within yhdY at 1629.329 kb on + strand, within yhdY at 1629.373 kb on + strand, within yhdY at 1629.374 kb on - strand, within yhdY at 1629.374 kb on - strand, within yhdY at 1629.377 kb on + strand, within yhdY at 1629.377 kb on + strand, within yhdY at 1629.378 kb on - strand, within yhdY at 1629.441 kb on + strand, within yhdY at 1629.442 kb on - strand, within yhdY at 1629.469 kb on - strand, within yhdY at 1629.469 kb on - strand, within yhdY at 1629.493 kb on - strand, within yhdY at 1629.554 kb on + strand, within yhdY at 1629.566 kb on - strand, within yhdY at 1629.600 kb on + strand, within yhdY at 1629.604 kb on + strand, within yhdY at 1629.604 kb on + strand, within yhdY at 1629.604 kb on + strand, within yhdY at 1629.604 kb on + strand, within yhdY at 1629.605 kb on - strand, within yhdY at 1629.605 kb on - strand, within yhdY at 1629.605 kb on - strand, within yhdY at 1629.740 kb on + strand, within yhdY at 1629.740 kb on + strand, within yhdY at 1629.741 kb on - strand, within yhdY at 1629.741 kb on - strand, within yhdY at 1629.751 kb on + strand, within yhdY at 1629.751 kb on + strand, within yhdY at 1629.763 kb on + strand at 1629.764 kb on - strand at 1629.764 kb on - strand at 1629.854 kb on + strand at 1629.854 kb on + strand at 1629.854 kb on + strand at 1629.854 kb on + strand at 1629.855 kb on - strand at 1629.855 kb on - strand at 1629.855 kb on - strand at 1629.855 kb on - strand at 1629.877 kb on - strand at 1629.906 kb on + strand at 1629.906 kb on + strand at 1629.906 kb on + strand at 1629.907 kb on - strand at 1629.907 kb on - strand at 1629.910 kb on + strand at 1629.910 kb on + strand at 1629.911 kb on - strand at 1629.911 kb on - strand at 1629.911 kb on - strand at 1629.911 kb on - strand at 1629.911 kb on - strand at 1629.928 kb on + strand at 1629.948 kb on + strand at 1630.126 kb on + strand, within yhdX at 1630.127 kb on - strand, within yhdX at 1630.192 kb on - strand, within yhdX at 1630.243 kb on + strand, within yhdX at 1630.243 kb on + strand, within yhdX at 1630.243 kb on + strand, within yhdX at 1630.243 kb on + strand, within yhdX at 1630.244 kb on - strand, within yhdX at 1630.244 kb on - strand, within yhdX at 1630.244 kb on - strand, within yhdX at 1630.286 kb on + strand, within yhdX at 1630.287 kb on - strand, within yhdX at 1630.287 kb on - strand, within yhdX at 1630.310 kb on - strand, within yhdX at 1630.320 kb on - strand, within yhdX at 1630.341 kb on - strand, within yhdX at 1630.433 kb on + strand, within yhdX at 1630.434 kb on - strand, within yhdX at 1630.440 kb on + strand, within yhdX at 1630.440 kb on + strand, within yhdX at 1630.441 kb on - strand, within yhdX at 1630.447 kb on + strand, within yhdX at 1630.447 kb on + strand, within yhdX at 1630.448 kb on - strand, within yhdX at 1630.478 kb on + strand, within yhdX at 1630.478 kb on + strand, within yhdX at 1630.478 kb on + strand, within yhdX at 1630.479 kb on - strand, within yhdX at 1630.480 kb on + strand, within yhdX at 1630.481 kb on - strand, within yhdX at 1630.541 kb on - strand, within yhdX at 1630.541 kb on - strand, within yhdX at 1630.542 kb on + strand, within yhdX at 1630.542 kb on + strand, within yhdX at 1630.542 kb on + strand, within yhdX at 1630.543 kb on - strand, within yhdX at 1630.543 kb on - strand, within yhdX at 1630.627 kb on - strand, within yhdX at 1630.657 kb on + strand, within yhdX at 1630.657 kb on + strand, within yhdX at 1630.658 kb on - strand, within yhdX at 1630.658 kb on - strand, within yhdX at 1630.660 kb on + strand, within yhdX at 1630.661 kb on - strand, within yhdX at 1630.676 kb on - strand, within yhdX at 1630.677 kb on + strand, within yhdX at 1630.678 kb on - strand, within yhdX at 1630.762 kb on + strand, within yhdX at 1630.763 kb on - strand, within yhdX at 1630.763 kb on - strand, within yhdX at 1630.763 kb on - strand, within yhdX at 1630.782 kb on - strand, within yhdX at 1630.787 kb on - strand, within yhdX at 1630.818 kb on + strand, within yhdX at 1630.818 kb on + strand, within yhdX at 1630.818 kb on + strand, within yhdX at 1630.900 kb on + strand, within yhdX at 1630.941 kb on - strand at 1631.056 kb on + strand at 1631.056 kb on + strand at 1631.057 kb on - strand at 1631.057 kb on - strand at 1631.074 kb on + strand at 1631.144 kb on - strand at 1631.150 kb on + strand at 1631.151 kb on - strand at 1631.159 kb on + strand at 1631.211 kb on + strand at 1631.211 kb on + strand at 1631.211 kb on + strand at 1631.211 kb on + strand at 1631.212 kb on - strand at 1631.212 kb on - strand at 1631.236 kb on + strand, within yhdW at 1631.261 kb on + strand, within yhdW at 1631.262 kb on - strand, within yhdW at 1631.262 kb on - strand, within yhdW at 1631.263 kb on + strand, within yhdW at 1631.264 kb on - strand, within yhdW at 1631.264 kb on - strand, within yhdW at 1631.264 kb on - strand, within yhdW at 1631.264 kb on - strand, within yhdW at 1631.273 kb on + strand, within yhdW at 1631.331 kb on - strand, within yhdW at 1631.400 kb on + strand, within yhdW at 1631.400 kb on + strand, within yhdW at 1631.400 kb on + strand, within yhdW at 1631.401 kb on - strand, within yhdW at 1631.401 kb on - strand, within yhdW at 1631.401 kb on - strand, within yhdW at 1631.401 kb on - strand, within yhdW at 1631.424 kb on + strand, within yhdW at 1631.425 kb on - strand, within yhdW at 1631.461 kb on - strand, within yhdW at 1631.480 kb on + strand, within yhdW at 1631.487 kb on - strand, within yhdW at 1631.487 kb on - strand, within yhdW at 1631.523 kb on + strand, within yhdW at 1631.523 kb on + strand, within yhdW at 1631.523 kb on + strand, within yhdW at 1631.524 kb on - strand, within yhdW at 1631.542 kb on + strand, within yhdW at 1631.543 kb on - strand, within yhdW at 1631.543 kb on - strand, within yhdW at 1631.543 kb on - strand, within yhdW at 1631.635 kb on + strand, within yhdW at 1631.635 kb on + strand, within yhdW at 1631.635 kb on + strand, within yhdW at 1631.635 kb on + strand, within yhdW at 1631.635 kb on + strand, within yhdW at 1631.636 kb on - strand, within yhdW at 1631.636 kb on - strand, within yhdW at 1631.636 kb on - strand, within yhdW at 1631.636 kb on - strand, within yhdW at 1631.636 kb on - strand, within yhdW at 1631.642 kb on + strand, within yhdW at 1631.642 kb on + strand, within yhdW at 1631.643 kb on - strand, within yhdW at 1631.643 kb on - strand, within yhdW at 1631.779 kb on + strand, within yhdW at 1631.779 kb on + strand, within yhdW at 1631.780 kb on - strand, within yhdW at 1631.780 kb on - strand, within yhdW at 1631.780 kb on - strand, within yhdW at 1631.780 kb on - strand, within yhdW at 1631.792 kb on + strand, within yhdW at 1631.792 kb on + strand, within yhdW at 1631.793 kb on - strand, within yhdW at 1631.840 kb on + strand, within yhdW at 1631.906 kb on + strand, within yhdW at 1631.908 kb on + strand, within yhdW at 1631.908 kb on + strand, within yhdW at 1631.909 kb on - strand, within yhdW at 1631.909 kb on - strand, within yhdW at 1631.935 kb on - strand, within yhdW at 1631.935 kb on - strand, within yhdW at 1631.935 kb on - strand, within yhdW
Per-strain Table
Position Strand Gene LocusTag Fraction WM_RB68 remove 1,628,984 - yhdY MCAODC_08145 0.20 +0.7 1,628,987 + yhdY MCAODC_08145 0.20 -1.0 1,629,082 - yhdY MCAODC_08145 0.29 -0.0 1,629,091 + yhdY MCAODC_08145 0.30 +0.3 1,629,104 + yhdY MCAODC_08145 0.31 -1.6 1,629,105 - yhdY MCAODC_08145 0.31 +0.6 1,629,132 + yhdY MCAODC_08145 0.34 -0.1 1,629,132 + yhdY MCAODC_08145 0.34 +1.3 1,629,132 + yhdY MCAODC_08145 0.34 +0.8 1,629,132 + yhdY MCAODC_08145 0.34 -0.4 1,629,132 + yhdY MCAODC_08145 0.34 -0.9 1,629,133 - yhdY MCAODC_08145 0.34 -0.4 1,629,133 - yhdY MCAODC_08145 0.34 +0.4 1,629,229 + yhdY MCAODC_08145 0.42 -0.9 1,629,230 - yhdY MCAODC_08145 0.42 -2.1 1,629,230 - yhdY MCAODC_08145 0.42 -0.1 1,629,230 - yhdY MCAODC_08145 0.42 -0.4 1,629,242 - yhdY MCAODC_08145 0.43 +0.1 1,629,285 - yhdY MCAODC_08145 0.47 -1.2 1,629,285 - yhdY MCAODC_08145 0.47 +0.1 1,629,321 - yhdY MCAODC_08145 0.51 -0.1 1,629,329 + yhdY MCAODC_08145 0.51 +0.1 1,629,373 + yhdY MCAODC_08145 0.55 -1.1 1,629,374 - yhdY MCAODC_08145 0.55 +0.6 1,629,374 - yhdY MCAODC_08145 0.55 +0.1 1,629,377 + yhdY MCAODC_08145 0.56 +1.2 1,629,377 + yhdY MCAODC_08145 0.56 -1.7 1,629,378 - yhdY MCAODC_08145 0.56 -0.2 1,629,441 + yhdY MCAODC_08145 0.62 -0.2 1,629,442 - yhdY MCAODC_08145 0.62 +2.1 1,629,469 - yhdY MCAODC_08145 0.64 +1.3 1,629,469 - yhdY MCAODC_08145 0.64 +0.8 1,629,493 - yhdY MCAODC_08145 0.66 -0.1 1,629,554 + yhdY MCAODC_08145 0.72 -2.6 1,629,566 - yhdY MCAODC_08145 0.73 -0.0 1,629,600 + yhdY MCAODC_08145 0.76 +1.1 1,629,604 + yhdY MCAODC_08145 0.76 -1.8 1,629,604 + yhdY MCAODC_08145 0.76 -0.4 1,629,604 + yhdY MCAODC_08145 0.76 +1.8 1,629,604 + yhdY MCAODC_08145 0.76 +0.6 1,629,605 - yhdY MCAODC_08145 0.76 +1.3 1,629,605 - yhdY MCAODC_08145 0.76 -0.3 1,629,605 - yhdY MCAODC_08145 0.76 +0.6 1,629,740 + yhdY MCAODC_08145 0.89 +0.3 1,629,740 + yhdY MCAODC_08145 0.89 -0.1 1,629,741 - yhdY MCAODC_08145 0.89 +0.3 1,629,741 - yhdY MCAODC_08145 0.89 -0.3 1,629,751 + yhdY MCAODC_08145 0.90 -0.1 1,629,751 + yhdY MCAODC_08145 0.90 +0.5 1,629,763 + +0.3 1,629,764 - +1.4 1,629,764 - -0.4 1,629,854 + -0.0 1,629,854 + +0.2 1,629,854 + -0.1 1,629,854 + -0.5 1,629,855 - +0.1 1,629,855 - -0.0 1,629,855 - +0.1 1,629,855 - -1.1 1,629,877 - +0.5 1,629,906 + +1.1 1,629,906 + +1.4 1,629,906 + +0.3 1,629,907 - -0.2 1,629,907 - +0.9 1,629,910 + -0.8 1,629,910 + -0.7 1,629,911 - -0.0 1,629,911 - +0.5 1,629,911 - +0.2 1,629,911 - +0.0 1,629,911 - +0.7 1,629,928 + -1.7 1,629,948 + +0.5 1,630,126 + yhdX MCAODC_08150 0.21 +1.7 1,630,127 - yhdX MCAODC_08150 0.21 +0.0 1,630,192 - yhdX MCAODC_08150 0.27 +0.6 1,630,243 + yhdX MCAODC_08150 0.31 -0.2 1,630,243 + yhdX MCAODC_08150 0.31 +0.7 1,630,243 + yhdX MCAODC_08150 0.31 -1.4 1,630,243 + yhdX MCAODC_08150 0.31 +0.2 1,630,244 - yhdX MCAODC_08150 0.31 +0.4 1,630,244 - yhdX MCAODC_08150 0.31 +0.5 1,630,244 - yhdX MCAODC_08150 0.31 -0.9 1,630,286 + yhdX MCAODC_08150 0.35 -1.2 1,630,287 - yhdX MCAODC_08150 0.35 +1.3 1,630,287 - yhdX MCAODC_08150 0.35 +1.1 1,630,310 - yhdX MCAODC_08150 0.37 -0.1 1,630,320 - yhdX MCAODC_08150 0.38 +0.5 1,630,341 - yhdX MCAODC_08150 0.39 -0.1 1,630,433 + yhdX MCAODC_08150 0.47 -0.6 1,630,434 - yhdX MCAODC_08150 0.47 -0.6 1,630,440 + yhdX MCAODC_08150 0.48 +1.0 1,630,440 + yhdX MCAODC_08150 0.48 +0.3 1,630,441 - yhdX MCAODC_08150 0.48 +0.5 1,630,447 + yhdX MCAODC_08150 0.48 +1.0 1,630,447 + yhdX MCAODC_08150 0.48 -0.2 1,630,448 - yhdX MCAODC_08150 0.48 +0.5 1,630,478 + yhdX MCAODC_08150 0.51 -0.4 1,630,478 + yhdX MCAODC_08150 0.51 +0.4 1,630,478 + yhdX MCAODC_08150 0.51 -0.6 1,630,479 - yhdX MCAODC_08150 0.51 -0.5 1,630,480 + yhdX MCAODC_08150 0.51 -0.1 1,630,481 - yhdX MCAODC_08150 0.51 +0.1 1,630,541 - yhdX MCAODC_08150 0.56 -0.0 1,630,541 - yhdX MCAODC_08150 0.56 +0.2 1,630,542 + yhdX MCAODC_08150 0.56 +0.5 1,630,542 + yhdX MCAODC_08150 0.56 -1.3 1,630,542 + yhdX MCAODC_08150 0.56 -2.6 1,630,543 - yhdX MCAODC_08150 0.57 +1.6 1,630,543 - yhdX MCAODC_08150 0.57 +0.6 1,630,627 - yhdX MCAODC_08150 0.64 +0.7 1,630,657 + yhdX MCAODC_08150 0.66 -0.0 1,630,657 + yhdX MCAODC_08150 0.66 +0.8 1,630,658 - yhdX MCAODC_08150 0.66 -0.8 1,630,658 - yhdX MCAODC_08150 0.66 +0.7 1,630,660 + yhdX MCAODC_08150 0.66 +0.7 1,630,661 - yhdX MCAODC_08150 0.66 -0.1 1,630,676 - yhdX MCAODC_08150 0.68 +0.2 1,630,677 + yhdX MCAODC_08150 0.68 -0.3 1,630,678 - yhdX MCAODC_08150 0.68 -1.7 1,630,762 + yhdX MCAODC_08150 0.75 -0.5 1,630,763 - yhdX MCAODC_08150 0.75 +0.5 1,630,763 - yhdX MCAODC_08150 0.75 +0.5 1,630,763 - yhdX MCAODC_08150 0.75 +0.0 1,630,782 - yhdX MCAODC_08150 0.77 +0.9 1,630,787 - yhdX MCAODC_08150 0.77 +1.3 1,630,818 + yhdX MCAODC_08150 0.80 +1.8 1,630,818 + yhdX MCAODC_08150 0.80 +0.8 1,630,818 + yhdX MCAODC_08150 0.80 -1.2 1,630,900 + yhdX MCAODC_08150 0.87 -0.9 1,630,941 - -0.4 1,631,056 + -1.1 1,631,056 + -0.6 1,631,057 - +0.6 1,631,057 - -0.9 1,631,074 + +0.4 1,631,144 - +0.3 1,631,150 + -0.7 1,631,151 - -0.2 1,631,159 + +1.1 1,631,211 + -0.2 1,631,211 + -0.1 1,631,211 + +0.9 1,631,211 + +0.6 1,631,212 - -0.2 1,631,212 - -0.2 1,631,236 + yhdW MCAODC_08155 0.11 +1.6 1,631,261 + yhdW MCAODC_08155 0.13 -2.0 1,631,262 - yhdW MCAODC_08155 0.13 +0.5 1,631,262 - yhdW MCAODC_08155 0.13 +2.6 1,631,263 + yhdW MCAODC_08155 0.14 +0.6 1,631,264 - yhdW MCAODC_08155 0.14 -0.0 1,631,264 - yhdW MCAODC_08155 0.14 +0.6 1,631,264 - yhdW MCAODC_08155 0.14 +0.1 1,631,264 - yhdW MCAODC_08155 0.14 -1.1 1,631,273 + yhdW MCAODC_08155 0.15 +0.2 1,631,331 - yhdW MCAODC_08155 0.20 +0.2 1,631,400 + yhdW MCAODC_08155 0.27 -0.7 1,631,400 + yhdW MCAODC_08155 0.27 +0.4 1,631,400 + yhdW MCAODC_08155 0.27 +0.8 1,631,401 - yhdW MCAODC_08155 0.27 -1.1 1,631,401 - yhdW MCAODC_08155 0.27 +0.1 1,631,401 - yhdW MCAODC_08155 0.27 +0.6 1,631,401 - yhdW MCAODC_08155 0.27 -0.2 1,631,424 + yhdW MCAODC_08155 0.29 +0.2 1,631,425 - yhdW MCAODC_08155 0.29 +1.1 1,631,461 - yhdW MCAODC_08155 0.33 -0.9 1,631,480 + yhdW MCAODC_08155 0.35 +0.5 1,631,487 - yhdW MCAODC_08155 0.35 +0.1 1,631,487 - yhdW MCAODC_08155 0.35 -1.5 1,631,523 + yhdW MCAODC_08155 0.39 +0.5 1,631,523 + yhdW MCAODC_08155 0.39 +0.3 1,631,523 + yhdW MCAODC_08155 0.39 -1.2 1,631,524 - yhdW MCAODC_08155 0.39 -0.2 1,631,542 + yhdW MCAODC_08155 0.41 -1.6 1,631,543 - yhdW MCAODC_08155 0.41 -1.2 1,631,543 - yhdW MCAODC_08155 0.41 +0.8 1,631,543 - yhdW MCAODC_08155 0.41 -0.1 1,631,635 + yhdW MCAODC_08155 0.50 -0.4 1,631,635 + yhdW MCAODC_08155 0.50 +0.9 1,631,635 + yhdW MCAODC_08155 0.50 -0.8 1,631,635 + yhdW MCAODC_08155 0.50 +0.3 1,631,635 + yhdW MCAODC_08155 0.50 -2.2 1,631,636 - yhdW MCAODC_08155 0.50 -0.1 1,631,636 - yhdW MCAODC_08155 0.50 -0.1 1,631,636 - yhdW MCAODC_08155 0.50 +0.4 1,631,636 - yhdW MCAODC_08155 0.50 +0.1 1,631,636 - yhdW MCAODC_08155 0.50 +1.9 1,631,642 + yhdW MCAODC_08155 0.50 -1.2 1,631,642 + yhdW MCAODC_08155 0.50 +0.8 1,631,643 - yhdW MCAODC_08155 0.51 -1.0 1,631,643 - yhdW MCAODC_08155 0.51 +0.9 1,631,779 + yhdW MCAODC_08155 0.64 +0.9 1,631,779 + yhdW MCAODC_08155 0.64 +2.9 1,631,780 - yhdW MCAODC_08155 0.64 -3.5 1,631,780 - yhdW MCAODC_08155 0.64 -0.1 1,631,780 - yhdW MCAODC_08155 0.64 -2.6 1,631,780 - yhdW MCAODC_08155 0.64 +0.5 1,631,792 + yhdW MCAODC_08155 0.65 +2.8 1,631,792 + yhdW MCAODC_08155 0.65 +1.2 1,631,793 - yhdW MCAODC_08155 0.65 -0.7 1,631,840 + yhdW MCAODC_08155 0.70 -0.2 1,631,906 + yhdW MCAODC_08155 0.76 -0.5 1,631,908 + yhdW MCAODC_08155 0.76 +0.1 1,631,908 + yhdW MCAODC_08155 0.76 -0.7 1,631,909 - yhdW MCAODC_08155 0.77 +0.0 1,631,909 - yhdW MCAODC_08155 0.77 -0.1 1,631,935 - yhdW MCAODC_08155 0.79 +0.6 1,631,935 - yhdW MCAODC_08155 0.79 -0.4 1,631,935 - yhdW MCAODC_08155 0.79 -0.0
Or see this region's nucleotide sequence