Strain Fitness in Escherichia coli ECRC101 around MCAODC_08050

Experiment: WM_RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttrkA and rsmB are separated by 21 nucleotidesrsmB and fmt are separated by 45 nucleotides MCAODC_08045: trkA - Trk system potassium transporter TrkA, at 1,613,289 to 1,614,665 trkA MCAODC_08050: rsmB - 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB, at 1,614,687 to 1,615,976 rsmB MCAODC_08055: fmt - methionyl-tRNA formyltransferase, at 1,616,022 to 1,616,969 fmt Position (kb) 1614 1615 1616Strain fitness (log2 ratio) -2 -1 0 1 2at 1614.831 kb on - strand, within rsmBat 1614.831 kb on - strand, within rsmBat 1614.863 kb on - strand, within rsmBat 1614.863 kb on - strand, within rsmBat 1614.863 kb on - strand, within rsmBat 1614.966 kb on - strand, within rsmBat 1614.966 kb on - strand, within rsmBat 1614.966 kb on - strand, within rsmBat 1614.966 kb on - strand, within rsmBat 1614.966 kb on - strand, within rsmBat 1614.966 kb on - strand, within rsmBat 1615.018 kb on - strand, within rsmBat 1615.095 kb on - strand, within rsmBat 1615.095 kb on - strand, within rsmBat 1615.095 kb on - strand, within rsmBat 1615.095 kb on - strand, within rsmBat 1615.095 kb on - strand, within rsmBat 1615.108 kb on - strand, within rsmBat 1615.118 kb on - strand, within rsmBat 1615.351 kb on - strand, within rsmBat 1615.437 kb on - strand, within rsmBat 1615.443 kb on - strand, within rsmBat 1615.612 kb on - strand, within rsmBat 1615.615 kb on - strand, within rsmBat 1615.788 kb on - strand, within rsmBat 1615.788 kb on - strand, within rsmBat 1615.804 kb on - strand, within rsmBat 1615.962 kb on - strandat 1615.977 kb on - strandat 1615.981 kb on - strandat 1615.981 kb on - strandat 1616.007 kb on + strandat 1616.008 kb on - strandat 1616.021 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_RB68
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1,614,831 - rsmB MCAODC_08050 0.11 +0.3
1,614,831 - rsmB MCAODC_08050 0.11 +0.8
1,614,863 - rsmB MCAODC_08050 0.14 -0.2
1,614,863 - rsmB MCAODC_08050 0.14 -0.9
1,614,863 - rsmB MCAODC_08050 0.14 +2.1
1,614,966 - rsmB MCAODC_08050 0.22 +0.1
1,614,966 - rsmB MCAODC_08050 0.22 +1.3
1,614,966 - rsmB MCAODC_08050 0.22 +0.8
1,614,966 - rsmB MCAODC_08050 0.22 -0.5
1,614,966 - rsmB MCAODC_08050 0.22 +1.1
1,614,966 - rsmB MCAODC_08050 0.22 +0.3
1,615,018 - rsmB MCAODC_08050 0.26 -1.4
1,615,095 - rsmB MCAODC_08050 0.32 +0.3
1,615,095 - rsmB MCAODC_08050 0.32 +0.8
1,615,095 - rsmB MCAODC_08050 0.32 +1.1
1,615,095 - rsmB MCAODC_08050 0.32 +0.8
1,615,095 - rsmB MCAODC_08050 0.32 +1.7
1,615,108 - rsmB MCAODC_08050 0.33 -0.4
1,615,118 - rsmB MCAODC_08050 0.33 -1.3
1,615,351 - rsmB MCAODC_08050 0.51 -0.3
1,615,437 - rsmB MCAODC_08050 0.58 +1.3
1,615,443 - rsmB MCAODC_08050 0.59 -0.1
1,615,612 - rsmB MCAODC_08050 0.72 +0.4
1,615,615 - rsmB MCAODC_08050 0.72 +0.5
1,615,788 - rsmB MCAODC_08050 0.85 +1.3
1,615,788 - rsmB MCAODC_08050 0.85 -0.8
1,615,804 - rsmB MCAODC_08050 0.87 -2.1
1,615,962 - +0.6
1,615,977 - +0.0
1,615,981 - -0.2
1,615,981 - -0.5
1,616,007 + +0.3
1,616,008 - -0.2
1,616,021 - -0.4

Or see this region's nucleotide sequence