Strain Fitness in Escherichia coli ECRC101 around MCAODC_07885

Experiment: WM_RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntbfr and pulO overlap by 4 nucleotidespulO and rpsJ are separated by 378 nucleotidesrpsJ and rplC are separated by 32 nucleotidesrplC and rplD are separated by 10 nucleotides MCAODC_07875: bfr - bacterioferritin, at 1,596,594 to 1,597,070 bfr MCAODC_07880: pulO - prepilin peptidase, at 1,597,067 to 1,597,534 pulO MCAODC_07885: rpsJ - 30S ribosomal protein S10, at 1,597,913 to 1,598,224 rpsJ MCAODC_07890: rplC - 50S ribosomal protein L3, at 1,598,257 to 1,598,886 rplC MCAODC_07895: rplD - 50S ribosomal protein L4, at 1,598,897 to 1,599,502 rplD Position (kb) 1597 1598 1599Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1596.933 kb on + strand, within bfrat 1596.933 kb on + strand, within bfrat 1596.933 kb on + strand, within bfrat 1596.933 kb on + strand, within bfrat 1596.934 kb on - strand, within bfrat 1596.934 kb on - strand, within bfrat 1596.934 kb on - strand, within bfrat 1596.934 kb on - strand, within bfrat 1597.056 kb on - strandat 1597.077 kb on - strandat 1597.088 kb on - strandat 1597.097 kb on + strandat 1597.097 kb on + strandat 1597.098 kb on - strandat 1597.180 kb on + strand, within pulOat 1597.181 kb on - strand, within pulOat 1597.181 kb on - strand, within pulOat 1597.181 kb on - strand, within pulOat 1597.184 kb on + strand, within pulOat 1597.184 kb on + strand, within pulOat 1597.184 kb on + strand, within pulOat 1597.184 kb on + strand, within pulOat 1597.184 kb on + strand, within pulOat 1597.229 kb on + strand, within pulOat 1597.229 kb on + strand, within pulOat 1597.284 kb on + strand, within pulOat 1597.289 kb on + strand, within pulOat 1597.289 kb on + strand, within pulOat 1597.289 kb on + strand, within pulOat 1597.290 kb on - strand, within pulOat 1597.310 kb on + strand, within pulOat 1597.310 kb on + strand, within pulOat 1597.354 kb on + strand, within pulOat 1597.368 kb on - strand, within pulOat 1597.380 kb on - strand, within pulOat 1597.404 kb on + strand, within pulOat 1597.404 kb on + strand, within pulOat 1597.405 kb on - strand, within pulOat 1597.439 kb on - strand, within pulOat 1597.439 kb on - strand, within pulOat 1597.452 kb on - strand, within pulOat 1597.503 kb on + strandat 1597.503 kb on + strandat 1597.504 kb on - strandat 1597.511 kb on + strandat 1597.525 kb on + strandat 1597.525 kb on + strandat 1597.535 kb on - strandat 1597.548 kb on + strandat 1597.648 kb on + strandat 1597.649 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_RB68
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1,596,933 + bfr MCAODC_07875 0.71 -0.2
1,596,933 + bfr MCAODC_07875 0.71 -0.8
1,596,933 + bfr MCAODC_07875 0.71 -0.8
1,596,933 + bfr MCAODC_07875 0.71 +1.2
1,596,934 - bfr MCAODC_07875 0.71 -0.8
1,596,934 - bfr MCAODC_07875 0.71 +0.7
1,596,934 - bfr MCAODC_07875 0.71 -0.2
1,596,934 - bfr MCAODC_07875 0.71 -1.9
1,597,056 - +0.2
1,597,077 - -2.4
1,597,088 - +0.3
1,597,097 + +0.8
1,597,097 + +0.8
1,597,098 - +0.1
1,597,180 + pulO MCAODC_07880 0.24 +0.9
1,597,181 - pulO MCAODC_07880 0.24 -1.5
1,597,181 - pulO MCAODC_07880 0.24 +0.3
1,597,181 - pulO MCAODC_07880 0.24 -0.3
1,597,184 + pulO MCAODC_07880 0.25 +0.7
1,597,184 + pulO MCAODC_07880 0.25 -0.7
1,597,184 + pulO MCAODC_07880 0.25 -0.3
1,597,184 + pulO MCAODC_07880 0.25 -1.2
1,597,184 + pulO MCAODC_07880 0.25 -1.4
1,597,229 + pulO MCAODC_07880 0.35 -0.4
1,597,229 + pulO MCAODC_07880 0.35 +0.2
1,597,284 + pulO MCAODC_07880 0.46 +0.3
1,597,289 + pulO MCAODC_07880 0.47 +1.0
1,597,289 + pulO MCAODC_07880 0.47 +0.1
1,597,289 + pulO MCAODC_07880 0.47 -0.4
1,597,290 - pulO MCAODC_07880 0.48 +0.4
1,597,310 + pulO MCAODC_07880 0.52 -1.0
1,597,310 + pulO MCAODC_07880 0.52 -0.5
1,597,354 + pulO MCAODC_07880 0.61 +0.4
1,597,368 - pulO MCAODC_07880 0.64 -0.2
1,597,380 - pulO MCAODC_07880 0.67 +0.6
1,597,404 + pulO MCAODC_07880 0.72 -0.0
1,597,404 + pulO MCAODC_07880 0.72 +0.1
1,597,405 - pulO MCAODC_07880 0.72 -0.9
1,597,439 - pulO MCAODC_07880 0.79 -0.6
1,597,439 - pulO MCAODC_07880 0.79 +3.1
1,597,452 - pulO MCAODC_07880 0.82 -0.2
1,597,503 + -0.9
1,597,503 + +0.3
1,597,504 - +2.3
1,597,511 + -0.9
1,597,525 + -0.1
1,597,525 + -0.2
1,597,535 - -0.2
1,597,548 + +0.0
1,597,648 + +0.3
1,597,649 - +1.3

Or see this region's nucleotide sequence