Experiment: WM_RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt bfr and pulO overlap by 4 nucleotides pulO and rpsJ are separated by 378 nucleotides rpsJ and rplC are separated by 32 nucleotides rplC and rplD are separated by 10 nucleotides
MCAODC_07875: bfr - bacterioferritin, at 1,596,594 to 1,597,070
bfr
MCAODC_07880: pulO - prepilin peptidase, at 1,597,067 to 1,597,534
pulO
MCAODC_07885: rpsJ - 30S ribosomal protein S10, at 1,597,913 to 1,598,224
rpsJ
MCAODC_07890: rplC - 50S ribosomal protein L3, at 1,598,257 to 1,598,886
rplC
MCAODC_07895: rplD - 50S ribosomal protein L4, at 1,598,897 to 1,599,502
rplD
Position (kb)
1597
1598
1599 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1596.933 kb on + strand, within bfr at 1596.933 kb on + strand, within bfr at 1596.933 kb on + strand, within bfr at 1596.933 kb on + strand, within bfr at 1596.934 kb on - strand, within bfr at 1596.934 kb on - strand, within bfr at 1596.934 kb on - strand, within bfr at 1596.934 kb on - strand, within bfr at 1597.056 kb on - strand at 1597.077 kb on - strand at 1597.088 kb on - strand at 1597.097 kb on + strand at 1597.097 kb on + strand at 1597.098 kb on - strand at 1597.180 kb on + strand, within pulO at 1597.181 kb on - strand, within pulO at 1597.181 kb on - strand, within pulO at 1597.181 kb on - strand, within pulO at 1597.184 kb on + strand, within pulO at 1597.184 kb on + strand, within pulO at 1597.184 kb on + strand, within pulO at 1597.184 kb on + strand, within pulO at 1597.184 kb on + strand, within pulO at 1597.229 kb on + strand, within pulO at 1597.229 kb on + strand, within pulO at 1597.284 kb on + strand, within pulO at 1597.289 kb on + strand, within pulO at 1597.289 kb on + strand, within pulO at 1597.289 kb on + strand, within pulO at 1597.290 kb on - strand, within pulO at 1597.310 kb on + strand, within pulO at 1597.310 kb on + strand, within pulO at 1597.354 kb on + strand, within pulO at 1597.368 kb on - strand, within pulO at 1597.380 kb on - strand, within pulO at 1597.404 kb on + strand, within pulO at 1597.404 kb on + strand, within pulO at 1597.405 kb on - strand, within pulO at 1597.439 kb on - strand, within pulO at 1597.439 kb on - strand, within pulO at 1597.452 kb on - strand, within pulO at 1597.503 kb on + strand at 1597.503 kb on + strand at 1597.504 kb on - strand at 1597.511 kb on + strand at 1597.525 kb on + strand at 1597.525 kb on + strand at 1597.535 kb on - strand at 1597.548 kb on + strand at 1597.648 kb on + strand at 1597.649 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_RB68 remove 1,596,933 + bfr MCAODC_07875 0.71 -0.2 1,596,933 + bfr MCAODC_07875 0.71 -0.8 1,596,933 + bfr MCAODC_07875 0.71 -0.8 1,596,933 + bfr MCAODC_07875 0.71 +1.2 1,596,934 - bfr MCAODC_07875 0.71 -0.8 1,596,934 - bfr MCAODC_07875 0.71 +0.7 1,596,934 - bfr MCAODC_07875 0.71 -0.2 1,596,934 - bfr MCAODC_07875 0.71 -1.9 1,597,056 - +0.2 1,597,077 - -2.4 1,597,088 - +0.3 1,597,097 + +0.8 1,597,097 + +0.8 1,597,098 - +0.1 1,597,180 + pulO MCAODC_07880 0.24 +0.9 1,597,181 - pulO MCAODC_07880 0.24 -1.5 1,597,181 - pulO MCAODC_07880 0.24 +0.3 1,597,181 - pulO MCAODC_07880 0.24 -0.3 1,597,184 + pulO MCAODC_07880 0.25 +0.7 1,597,184 + pulO MCAODC_07880 0.25 -0.7 1,597,184 + pulO MCAODC_07880 0.25 -0.3 1,597,184 + pulO MCAODC_07880 0.25 -1.2 1,597,184 + pulO MCAODC_07880 0.25 -1.4 1,597,229 + pulO MCAODC_07880 0.35 -0.4 1,597,229 + pulO MCAODC_07880 0.35 +0.2 1,597,284 + pulO MCAODC_07880 0.46 +0.3 1,597,289 + pulO MCAODC_07880 0.47 +1.0 1,597,289 + pulO MCAODC_07880 0.47 +0.1 1,597,289 + pulO MCAODC_07880 0.47 -0.4 1,597,290 - pulO MCAODC_07880 0.48 +0.4 1,597,310 + pulO MCAODC_07880 0.52 -1.0 1,597,310 + pulO MCAODC_07880 0.52 -0.5 1,597,354 + pulO MCAODC_07880 0.61 +0.4 1,597,368 - pulO MCAODC_07880 0.64 -0.2 1,597,380 - pulO MCAODC_07880 0.67 +0.6 1,597,404 + pulO MCAODC_07880 0.72 -0.0 1,597,404 + pulO MCAODC_07880 0.72 +0.1 1,597,405 - pulO MCAODC_07880 0.72 -0.9 1,597,439 - pulO MCAODC_07880 0.79 -0.6 1,597,439 - pulO MCAODC_07880 0.79 +3.1 1,597,452 - pulO MCAODC_07880 0.82 -0.2 1,597,503 + -0.9 1,597,503 + +0.3 1,597,504 - +2.3 1,597,511 + -0.9 1,597,525 + -0.1 1,597,525 + -0.2 1,597,535 - -0.2 1,597,548 + +0.0 1,597,648 + +0.3 1,597,649 - +1.3
Or see this region's nucleotide sequence