Experiment: WM_RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt xylG and xylF are separated by 77 nucleotides xylF and xylA are separated by 365 nucleotides
MCAODC_06460: xylG - D-xylose ABC transporter ATP-binding protein, at 1,306,258 to 1,307,799
xylG
MCAODC_06465: xylF - D-xylose ABC transporter substrate-binding protein, at 1,307,877 to 1,308,869
xylF
MCAODC_06470: xylA - xylose isomerase, at 1,309,235 to 1,310,557
xylA
Position (kb) 1307
1308
1309 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1306.900 kb on - strand, within xylG at 1306.968 kb on + strand, within xylG at 1306.968 kb on + strand, within xylG at 1306.969 kb on - strand, within xylG at 1306.977 kb on + strand, within xylG at 1306.977 kb on + strand, within xylG at 1306.978 kb on - strand, within xylG at 1306.978 kb on - strand, within xylG at 1307.020 kb on - strand, within xylG at 1307.023 kb on + strand, within xylG at 1307.024 kb on - strand, within xylG at 1307.043 kb on + strand, within xylG at 1307.043 kb on + strand, within xylG at 1307.043 kb on + strand, within xylG at 1307.044 kb on - strand, within xylG at 1307.044 kb on - strand, within xylG at 1307.044 kb on - strand, within xylG at 1307.097 kb on + strand, within xylG at 1307.101 kb on - strand, within xylG at 1307.208 kb on + strand, within xylG at 1307.211 kb on - strand, within xylG at 1307.214 kb on + strand, within xylG at 1307.214 kb on + strand, within xylG at 1307.215 kb on - strand, within xylG at 1307.236 kb on + strand, within xylG at 1307.236 kb on + strand, within xylG at 1307.247 kb on + strand, within xylG at 1307.248 kb on - strand, within xylG at 1307.281 kb on + strand, within xylG at 1307.308 kb on + strand, within xylG at 1307.329 kb on - strand, within xylG at 1307.329 kb on - strand, within xylG at 1307.372 kb on - strand, within xylG at 1307.437 kb on + strand, within xylG at 1307.438 kb on - strand, within xylG at 1307.496 kb on + strand, within xylG at 1307.496 kb on + strand, within xylG at 1307.554 kb on - strand, within xylG at 1307.610 kb on + strand, within xylG at 1307.611 kb on - strand, within xylG at 1307.625 kb on - strand, within xylG at 1307.639 kb on + strand, within xylG at 1307.639 kb on + strand, within xylG at 1307.639 kb on + strand, within xylG at 1307.640 kb on - strand, within xylG at 1307.643 kb on + strand, within xylG at 1307.788 kb on + strand at 1307.800 kb on - strand at 1307.813 kb on - strand at 1307.878 kb on + strand at 1307.878 kb on + strand at 1307.909 kb on + strand at 1307.910 kb on - strand at 1307.914 kb on - strand at 1307.987 kb on + strand, within xylF at 1307.988 kb on - strand, within xylF at 1307.988 kb on - strand, within xylF at 1307.992 kb on - strand, within xylF at 1307.999 kb on + strand, within xylF at 1307.999 kb on + strand, within xylF at 1307.999 kb on + strand, within xylF at 1308.054 kb on - strand, within xylF at 1308.069 kb on - strand, within xylF at 1308.071 kb on + strand, within xylF at 1308.071 kb on + strand, within xylF at 1308.071 kb on + strand, within xylF at 1308.071 kb on + strand, within xylF at 1308.072 kb on - strand, within xylF at 1308.077 kb on + strand, within xylF at 1308.077 kb on + strand, within xylF at 1308.077 kb on + strand, within xylF at 1308.077 kb on + strand, within xylF at 1308.077 kb on + strand, within xylF at 1308.077 kb on + strand, within xylF at 1308.077 kb on + strand, within xylF at 1308.077 kb on + strand, within xylF at 1308.078 kb on - strand, within xylF at 1308.078 kb on - strand, within xylF at 1308.078 kb on - strand, within xylF at 1308.078 kb on - strand, within xylF at 1308.078 kb on - strand, within xylF at 1308.078 kb on - strand, within xylF at 1308.078 kb on - strand, within xylF at 1308.078 kb on - strand, within xylF at 1308.079 kb on + strand, within xylF at 1308.079 kb on + strand, within xylF at 1308.080 kb on - strand, within xylF at 1308.080 kb on - strand, within xylF at 1308.089 kb on + strand, within xylF at 1308.089 kb on + strand, within xylF at 1308.090 kb on - strand, within xylF at 1308.111 kb on - strand, within xylF at 1308.111 kb on - strand, within xylF at 1308.111 kb on - strand, within xylF at 1308.116 kb on + strand, within xylF at 1308.119 kb on + strand, within xylF at 1308.181 kb on - strand, within xylF at 1308.225 kb on + strand, within xylF at 1308.226 kb on - strand, within xylF at 1308.226 kb on - strand, within xylF at 1308.226 kb on - strand, within xylF at 1308.245 kb on + strand, within xylF at 1308.346 kb on + strand, within xylF at 1308.346 kb on + strand, within xylF at 1308.347 kb on - strand, within xylF at 1308.347 kb on - strand, within xylF at 1308.347 kb on - strand, within xylF at 1308.386 kb on + strand, within xylF at 1308.387 kb on - strand, within xylF at 1308.424 kb on + strand, within xylF at 1308.425 kb on - strand, within xylF at 1308.425 kb on - strand, within xylF at 1308.528 kb on - strand, within xylF at 1308.535 kb on + strand, within xylF at 1308.536 kb on - strand, within xylF at 1308.536 kb on - strand, within xylF at 1308.581 kb on + strand, within xylF at 1308.581 kb on + strand, within xylF at 1308.582 kb on - strand, within xylF at 1308.691 kb on - strand, within xylF at 1308.786 kb on + strand at 1308.786 kb on + strand at 1308.821 kb on + strand at 1308.849 kb on + strand at 1308.906 kb on + strand at 1308.906 kb on + strand at 1309.048 kb on - strand at 1309.100 kb on - strand at 1309.156 kb on - strand at 1309.188 kb on - strand at 1309.313 kb on + strand at 1309.313 kb on + strand at 1309.313 kb on + strand at 1309.313 kb on + strand at 1309.314 kb on - strand at 1309.346 kb on - strand at 1309.408 kb on + strand, within xylA at 1309.477 kb on + strand, within xylA at 1309.478 kb on - strand, within xylA at 1309.512 kb on + strand, within xylA at 1309.512 kb on + strand, within xylA at 1309.512 kb on + strand, within xylA at 1309.512 kb on + strand, within xylA at 1309.512 kb on + strand, within xylA at 1309.512 kb on + strand, within xylA at 1309.513 kb on - strand, within xylA at 1309.513 kb on - strand, within xylA at 1309.513 kb on - strand, within xylA at 1309.527 kb on - strand, within xylA at 1309.570 kb on - strand, within xylA at 1309.577 kb on + strand, within xylA at 1309.577 kb on + strand, within xylA at 1309.577 kb on + strand, within xylA at 1309.578 kb on - strand, within xylA at 1309.669 kb on + strand, within xylA at 1309.670 kb on - strand, within xylA at 1309.670 kb on - strand, within xylA at 1309.768 kb on + strand, within xylA at 1309.827 kb on + strand, within xylA at 1309.827 kb on + strand, within xylA at 1309.828 kb on - strand, within xylA at 1309.828 kb on - strand, within xylA at 1309.828 kb on - strand, within xylA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_RB68 remove 1,306,900 - xylG MCAODC_06460 0.42 +0.6 1,306,968 + xylG MCAODC_06460 0.46 +1.2 1,306,968 + xylG MCAODC_06460 0.46 -0.0 1,306,969 - xylG MCAODC_06460 0.46 +0.2 1,306,977 + xylG MCAODC_06460 0.47 -0.1 1,306,977 + xylG MCAODC_06460 0.47 -1.8 1,306,978 - xylG MCAODC_06460 0.47 +0.2 1,306,978 - xylG MCAODC_06460 0.47 +1.1 1,307,020 - xylG MCAODC_06460 0.49 -0.5 1,307,023 + xylG MCAODC_06460 0.50 -1.0 1,307,024 - xylG MCAODC_06460 0.50 +0.7 1,307,043 + xylG MCAODC_06460 0.51 +0.4 1,307,043 + xylG MCAODC_06460 0.51 -0.2 1,307,043 + xylG MCAODC_06460 0.51 -2.0 1,307,044 - xylG MCAODC_06460 0.51 +1.0 1,307,044 - xylG MCAODC_06460 0.51 -0.0 1,307,044 - xylG MCAODC_06460 0.51 -0.5 1,307,097 + xylG MCAODC_06460 0.54 +0.1 1,307,101 - xylG MCAODC_06460 0.55 -1.2 1,307,208 + xylG MCAODC_06460 0.62 +0.4 1,307,211 - xylG MCAODC_06460 0.62 -0.5 1,307,214 + xylG MCAODC_06460 0.62 +0.5 1,307,214 + xylG MCAODC_06460 0.62 +0.7 1,307,215 - xylG MCAODC_06460 0.62 +0.9 1,307,236 + xylG MCAODC_06460 0.63 -1.5 1,307,236 + xylG MCAODC_06460 0.63 -1.9 1,307,247 + xylG MCAODC_06460 0.64 -0.6 1,307,248 - xylG MCAODC_06460 0.64 +0.7 1,307,281 + xylG MCAODC_06460 0.66 -0.3 1,307,308 + xylG MCAODC_06460 0.68 -0.1 1,307,329 - xylG MCAODC_06460 0.69 -0.3 1,307,329 - xylG MCAODC_06460 0.69 +0.9 1,307,372 - xylG MCAODC_06460 0.72 +0.7 1,307,437 + xylG MCAODC_06460 0.76 -0.2 1,307,438 - xylG MCAODC_06460 0.77 +0.6 1,307,496 + xylG MCAODC_06460 0.80 +0.3 1,307,496 + xylG MCAODC_06460 0.80 -1.1 1,307,554 - xylG MCAODC_06460 0.84 +2.2 1,307,610 + xylG MCAODC_06460 0.88 +0.5 1,307,611 - xylG MCAODC_06460 0.88 +0.5 1,307,625 - xylG MCAODC_06460 0.89 +0.6 1,307,639 + xylG MCAODC_06460 0.90 +0.1 1,307,639 + xylG MCAODC_06460 0.90 -1.0 1,307,639 + xylG MCAODC_06460 0.90 +0.3 1,307,640 - xylG MCAODC_06460 0.90 +0.5 1,307,643 + xylG MCAODC_06460 0.90 -1.6 1,307,788 + +0.5 1,307,800 - +0.2 1,307,813 - -0.3 1,307,878 + +0.4 1,307,878 + -0.4 1,307,909 + -1.4 1,307,910 - -0.4 1,307,914 - -0.1 1,307,987 + xylF MCAODC_06465 0.11 -1.5 1,307,988 - xylF MCAODC_06465 0.11 -1.1 1,307,988 - xylF MCAODC_06465 0.11 +0.3 1,307,992 - xylF MCAODC_06465 0.12 -0.3 1,307,999 + xylF MCAODC_06465 0.12 -0.6 1,307,999 + xylF MCAODC_06465 0.12 -0.2 1,307,999 + xylF MCAODC_06465 0.12 -0.4 1,308,054 - xylF MCAODC_06465 0.18 +0.7 1,308,069 - xylF MCAODC_06465 0.19 -0.9 1,308,071 + xylF MCAODC_06465 0.20 +0.2 1,308,071 + xylF MCAODC_06465 0.20 +0.2 1,308,071 + xylF MCAODC_06465 0.20 +0.8 1,308,071 + xylF MCAODC_06465 0.20 -0.1 1,308,072 - xylF MCAODC_06465 0.20 -1.0 1,308,077 + xylF MCAODC_06465 0.20 -0.8 1,308,077 + xylF MCAODC_06465 0.20 +0.8 1,308,077 + xylF MCAODC_06465 0.20 -0.0 1,308,077 + xylF MCAODC_06465 0.20 -0.5 1,308,077 + xylF MCAODC_06465 0.20 +0.8 1,308,077 + xylF MCAODC_06465 0.20 +0.1 1,308,077 + xylF MCAODC_06465 0.20 -1.3 1,308,077 + xylF MCAODC_06465 0.20 -0.1 1,308,078 - xylF MCAODC_06465 0.20 +0.4 1,308,078 - xylF MCAODC_06465 0.20 +1.9 1,308,078 - xylF MCAODC_06465 0.20 +0.3 1,308,078 - xylF MCAODC_06465 0.20 +0.0 1,308,078 - xylF MCAODC_06465 0.20 -0.1 1,308,078 - xylF MCAODC_06465 0.20 -1.1 1,308,078 - xylF MCAODC_06465 0.20 -0.4 1,308,078 - xylF MCAODC_06465 0.20 -0.3 1,308,079 + xylF MCAODC_06465 0.20 +0.3 1,308,079 + xylF MCAODC_06465 0.20 -1.0 1,308,080 - xylF MCAODC_06465 0.20 +0.1 1,308,080 - xylF MCAODC_06465 0.20 -0.1 1,308,089 + xylF MCAODC_06465 0.21 -0.1 1,308,089 + xylF MCAODC_06465 0.21 +1.2 1,308,090 - xylF MCAODC_06465 0.21 +1.0 1,308,111 - xylF MCAODC_06465 0.24 -1.0 1,308,111 - xylF MCAODC_06465 0.24 +2.3 1,308,111 - xylF MCAODC_06465 0.24 -0.1 1,308,116 + xylF MCAODC_06465 0.24 +0.2 1,308,119 + xylF MCAODC_06465 0.24 +1.0 1,308,181 - xylF MCAODC_06465 0.31 -1.2 1,308,225 + xylF MCAODC_06465 0.35 +0.1 1,308,226 - xylF MCAODC_06465 0.35 -0.1 1,308,226 - xylF MCAODC_06465 0.35 -0.7 1,308,226 - xylF MCAODC_06465 0.35 +0.3 1,308,245 + xylF MCAODC_06465 0.37 -0.2 1,308,346 + xylF MCAODC_06465 0.47 -0.6 1,308,346 + xylF MCAODC_06465 0.47 -0.7 1,308,347 - xylF MCAODC_06465 0.47 +2.0 1,308,347 - xylF MCAODC_06465 0.47 -0.4 1,308,347 - xylF MCAODC_06465 0.47 -0.0 1,308,386 + xylF MCAODC_06465 0.51 +1.4 1,308,387 - xylF MCAODC_06465 0.51 +0.1 1,308,424 + xylF MCAODC_06465 0.55 -0.9 1,308,425 - xylF MCAODC_06465 0.55 -1.6 1,308,425 - xylF MCAODC_06465 0.55 +0.3 1,308,528 - xylF MCAODC_06465 0.66 -1.9 1,308,535 + xylF MCAODC_06465 0.66 -1.1 1,308,536 - xylF MCAODC_06465 0.66 +1.0 1,308,536 - xylF MCAODC_06465 0.66 -1.3 1,308,581 + xylF MCAODC_06465 0.71 -1.8 1,308,581 + xylF MCAODC_06465 0.71 +0.1 1,308,582 - xylF MCAODC_06465 0.71 +0.3 1,308,691 - xylF MCAODC_06465 0.82 +0.2 1,308,786 + +0.5 1,308,786 + -0.5 1,308,821 + -2.0 1,308,849 + +0.1 1,308,906 + -1.3 1,308,906 + -1.6 1,309,048 - -0.1 1,309,100 - +0.2 1,309,156 - +1.2 1,309,188 - +0.7 1,309,313 + -1.0 1,309,313 + -0.6 1,309,313 + +0.0 1,309,313 + +0.9 1,309,314 - -2.0 1,309,346 - -0.8 1,309,408 + xylA MCAODC_06470 0.13 -0.3 1,309,477 + xylA MCAODC_06470 0.18 -0.1 1,309,478 - xylA MCAODC_06470 0.18 -2.2 1,309,512 + xylA MCAODC_06470 0.21 -0.5 1,309,512 + xylA MCAODC_06470 0.21 +1.9 1,309,512 + xylA MCAODC_06470 0.21 +0.5 1,309,512 + xylA MCAODC_06470 0.21 +0.2 1,309,512 + xylA MCAODC_06470 0.21 -0.0 1,309,512 + xylA MCAODC_06470 0.21 +0.0 1,309,513 - xylA MCAODC_06470 0.21 -3.4 1,309,513 - xylA MCAODC_06470 0.21 +1.1 1,309,513 - xylA MCAODC_06470 0.21 +0.3 1,309,527 - xylA MCAODC_06470 0.22 +1.4 1,309,570 - xylA MCAODC_06470 0.25 -1.5 1,309,577 + xylA MCAODC_06470 0.26 -0.0 1,309,577 + xylA MCAODC_06470 0.26 -0.3 1,309,577 + xylA MCAODC_06470 0.26 +0.3 1,309,578 - xylA MCAODC_06470 0.26 -0.3 1,309,669 + xylA MCAODC_06470 0.33 +0.4 1,309,670 - xylA MCAODC_06470 0.33 -1.5 1,309,670 - xylA MCAODC_06470 0.33 -0.4 1,309,768 + xylA MCAODC_06470 0.40 -1.7 1,309,827 + xylA MCAODC_06470 0.45 -0.9 1,309,827 + xylA MCAODC_06470 0.45 -0.6 1,309,828 - xylA MCAODC_06470 0.45 +0.4 1,309,828 - xylA MCAODC_06470 0.45 -0.2 1,309,828 - xylA MCAODC_06470 0.45 +0.0
Or see this region's nucleotide sequence