Experiment: WM_RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hemC and hemD overlap by 4 nucleotides hemD and hemX are separated by 21 nucleotides hemX and hemY are separated by 2 nucleotides
MCAODC_04955: hemC - hydroxymethylbilane synthase, at 1,001,705 to 1,002,667
hemC
MCAODC_04960: hemD - uroporphyrinogen-III synthase, at 1,002,664 to 1,003,404
hemD
MCAODC_04965: hemX - uroporphyrinogen-III C-methyltransferase, at 1,003,426 to 1,004,655
hemX
MCAODC_04970: hemY - protoheme IX biogenesis protein HemY, at 1,004,658 to 1,005,854
hemY
Position (kb)
1003
1004
1005 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1002.644 kb on + strand at 1002.644 kb on + strand at 1003.388 kb on + strand at 1003.388 kb on + strand at 1003.397 kb on + strand at 1003.397 kb on + strand at 1003.397 kb on + strand at 1003.397 kb on + strand at 1003.398 kb on - strand at 1003.398 kb on - strand at 1003.402 kb on + strand at 1003.402 kb on + strand at 1003.402 kb on + strand at 1003.402 kb on + strand at 1003.402 kb on + strand at 1003.402 kb on + strand at 1003.403 kb on - strand at 1003.518 kb on + strand at 1003.518 kb on + strand at 1003.561 kb on - strand, within hemX at 1003.588 kb on + strand, within hemX at 1003.588 kb on + strand, within hemX at 1003.589 kb on - strand, within hemX at 1003.589 kb on - strand, within hemX at 1003.589 kb on - strand, within hemX at 1003.600 kb on - strand, within hemX at 1003.704 kb on + strand, within hemX at 1003.708 kb on - strand, within hemX at 1003.708 kb on - strand, within hemX at 1003.708 kb on - strand, within hemX at 1003.816 kb on - strand, within hemX at 1003.816 kb on - strand, within hemX at 1003.977 kb on + strand, within hemX at 1003.977 kb on + strand, within hemX at 1003.978 kb on - strand, within hemX at 1003.978 kb on - strand, within hemX at 1004.020 kb on + strand, within hemX at 1004.037 kb on + strand, within hemX at 1004.200 kb on - strand, within hemX at 1004.200 kb on - strand, within hemX at 1004.238 kb on - strand, within hemX at 1004.253 kb on + strand, within hemX at 1004.257 kb on + strand, within hemX at 1004.257 kb on + strand, within hemX at 1004.257 kb on + strand, within hemX at 1004.257 kb on + strand, within hemX at 1004.257 kb on + strand, within hemX at 1004.257 kb on + strand, within hemX at 1004.258 kb on - strand, within hemX at 1004.258 kb on - strand, within hemX at 1004.258 kb on - strand, within hemX at 1004.258 kb on - strand, within hemX at 1004.258 kb on - strand, within hemX at 1004.272 kb on - strand, within hemX at 1004.363 kb on + strand, within hemX at 1004.364 kb on - strand, within hemX at 1004.364 kb on - strand, within hemX at 1004.371 kb on + strand, within hemX at 1004.371 kb on + strand, within hemX at 1004.371 kb on + strand, within hemX at 1004.371 kb on + strand, within hemX at 1004.371 kb on + strand, within hemX at 1004.371 kb on + strand, within hemX at 1004.372 kb on - strand, within hemX at 1004.372 kb on - strand, within hemX at 1004.372 kb on - strand, within hemX at 1004.372 kb on - strand, within hemX at 1004.374 kb on + strand, within hemX at 1004.374 kb on + strand, within hemX at 1004.374 kb on + strand, within hemX at 1004.375 kb on - strand, within hemX at 1004.375 kb on - strand, within hemX at 1004.375 kb on - strand, within hemX at 1004.418 kb on - strand, within hemX at 1004.418 kb on - strand, within hemX at 1004.426 kb on + strand, within hemX at 1004.427 kb on - strand, within hemX at 1004.427 kb on - strand, within hemX at 1004.550 kb on + strand at 1004.550 kb on + strand at 1004.550 kb on + strand at 1004.551 kb on - strand at 1004.736 kb on + strand at 1004.736 kb on + strand at 1004.737 kb on - strand at 1004.737 kb on - strand at 1004.760 kb on + strand at 1004.760 kb on + strand at 1004.760 kb on + strand at 1004.760 kb on + strand at 1004.760 kb on + strand at 1004.760 kb on + strand at 1004.760 kb on + strand at 1004.760 kb on + strand at 1004.760 kb on + strand at 1004.760 kb on + strand at 1004.761 kb on - strand at 1004.761 kb on - strand at 1004.761 kb on - strand at 1004.761 kb on - strand at 1004.766 kb on - strand at 1004.798 kb on - strand, within hemY at 1004.815 kb on + strand, within hemY at 1004.815 kb on + strand, within hemY at 1004.815 kb on + strand, within hemY at 1004.815 kb on + strand, within hemY at 1004.894 kb on + strand, within hemY at 1004.894 kb on + strand, within hemY at 1004.895 kb on - strand, within hemY at 1004.912 kb on + strand, within hemY at 1004.913 kb on - strand, within hemY at 1004.913 kb on - strand, within hemY at 1004.913 kb on - strand, within hemY at 1005.018 kb on + strand, within hemY at 1005.018 kb on + strand, within hemY at 1005.018 kb on + strand, within hemY at 1005.018 kb on + strand, within hemY at 1005.022 kb on + strand, within hemY at 1005.022 kb on + strand, within hemY at 1005.136 kb on + strand, within hemY at 1005.136 kb on + strand, within hemY at 1005.136 kb on + strand, within hemY at 1005.136 kb on + strand, within hemY at 1005.136 kb on + strand, within hemY at 1005.136 kb on + strand, within hemY at 1005.137 kb on - strand, within hemY at 1005.137 kb on - strand, within hemY at 1005.137 kb on - strand, within hemY at 1005.137 kb on - strand, within hemY at 1005.223 kb on + strand, within hemY at 1005.223 kb on + strand, within hemY at 1005.224 kb on - strand, within hemY at 1005.226 kb on + strand, within hemY at 1005.227 kb on - strand, within hemY at 1005.246 kb on + strand, within hemY at 1005.246 kb on + strand, within hemY at 1005.246 kb on + strand, within hemY at 1005.247 kb on - strand, within hemY at 1005.247 kb on - strand, within hemY at 1005.247 kb on - strand, within hemY at 1005.247 kb on - strand, within hemY at 1005.247 kb on - strand, within hemY at 1005.247 kb on - strand, within hemY at 1005.247 kb on - strand, within hemY at 1005.248 kb on + strand, within hemY at 1005.281 kb on + strand, within hemY at 1005.404 kb on + strand, within hemY at 1005.404 kb on + strand, within hemY at 1005.446 kb on - strand, within hemY at 1005.446 kb on - strand, within hemY at 1005.498 kb on - strand, within hemY at 1005.498 kb on - strand, within hemY at 1005.538 kb on - strand, within hemY
Per-strain Table
Position Strand Gene LocusTag Fraction WM_RB68 remove 1,002,644 + +0.3 1,002,644 + +1.0 1,003,388 + +1.8 1,003,388 + -1.4 1,003,397 + -2.6 1,003,397 + -0.4 1,003,397 + -0.1 1,003,397 + -0.8 1,003,398 - +0.7 1,003,398 - -1.7 1,003,402 + +0.7 1,003,402 + +0.8 1,003,402 + -2.3 1,003,402 + -2.0 1,003,402 + -1.7 1,003,402 + +0.1 1,003,403 - +0.2 1,003,518 + -0.4 1,003,518 + -1.0 1,003,561 - hemX MCAODC_04965 0.11 +0.9 1,003,588 + hemX MCAODC_04965 0.13 -0.5 1,003,588 + hemX MCAODC_04965 0.13 -1.3 1,003,589 - hemX MCAODC_04965 0.13 -1.0 1,003,589 - hemX MCAODC_04965 0.13 +0.0 1,003,589 - hemX MCAODC_04965 0.13 -0.6 1,003,600 - hemX MCAODC_04965 0.14 -1.4 1,003,704 + hemX MCAODC_04965 0.23 -0.1 1,003,708 - hemX MCAODC_04965 0.23 -1.5 1,003,708 - hemX MCAODC_04965 0.23 +1.3 1,003,708 - hemX MCAODC_04965 0.23 -1.3 1,003,816 - hemX MCAODC_04965 0.32 +1.1 1,003,816 - hemX MCAODC_04965 0.32 -0.4 1,003,977 + hemX MCAODC_04965 0.45 -0.3 1,003,977 + hemX MCAODC_04965 0.45 +0.7 1,003,978 - hemX MCAODC_04965 0.45 +1.0 1,003,978 - hemX MCAODC_04965 0.45 +0.5 1,004,020 + hemX MCAODC_04965 0.48 +0.6 1,004,037 + hemX MCAODC_04965 0.50 +0.2 1,004,200 - hemX MCAODC_04965 0.63 +0.5 1,004,200 - hemX MCAODC_04965 0.63 -1.6 1,004,238 - hemX MCAODC_04965 0.66 +1.0 1,004,253 + hemX MCAODC_04965 0.67 -0.9 1,004,257 + hemX MCAODC_04965 0.68 -1.1 1,004,257 + hemX MCAODC_04965 0.68 -0.3 1,004,257 + hemX MCAODC_04965 0.68 +0.6 1,004,257 + hemX MCAODC_04965 0.68 +0.5 1,004,257 + hemX MCAODC_04965 0.68 -2.0 1,004,257 + hemX MCAODC_04965 0.68 +0.3 1,004,258 - hemX MCAODC_04965 0.68 -0.3 1,004,258 - hemX MCAODC_04965 0.68 -0.9 1,004,258 - hemX MCAODC_04965 0.68 -0.5 1,004,258 - hemX MCAODC_04965 0.68 +0.0 1,004,258 - hemX MCAODC_04965 0.68 -0.4 1,004,272 - hemX MCAODC_04965 0.69 +0.3 1,004,363 + hemX MCAODC_04965 0.76 +0.9 1,004,364 - hemX MCAODC_04965 0.76 -0.5 1,004,364 - hemX MCAODC_04965 0.76 -0.2 1,004,371 + hemX MCAODC_04965 0.77 +0.3 1,004,371 + hemX MCAODC_04965 0.77 +0.4 1,004,371 + hemX MCAODC_04965 0.77 +1.7 1,004,371 + hemX MCAODC_04965 0.77 +0.2 1,004,371 + hemX MCAODC_04965 0.77 -1.6 1,004,371 + hemX MCAODC_04965 0.77 +0.0 1,004,372 - hemX MCAODC_04965 0.77 -2.1 1,004,372 - hemX MCAODC_04965 0.77 +2.6 1,004,372 - hemX MCAODC_04965 0.77 +1.4 1,004,372 - hemX MCAODC_04965 0.77 +1.9 1,004,374 + hemX MCAODC_04965 0.77 +0.2 1,004,374 + hemX MCAODC_04965 0.77 +0.3 1,004,374 + hemX MCAODC_04965 0.77 +0.5 1,004,375 - hemX MCAODC_04965 0.77 +0.8 1,004,375 - hemX MCAODC_04965 0.77 +1.3 1,004,375 - hemX MCAODC_04965 0.77 +0.8 1,004,418 - hemX MCAODC_04965 0.81 +0.3 1,004,418 - hemX MCAODC_04965 0.81 +0.0 1,004,426 + hemX MCAODC_04965 0.81 -1.0 1,004,427 - hemX MCAODC_04965 0.81 -2.4 1,004,427 - hemX MCAODC_04965 0.81 +0.1 1,004,550 + +0.8 1,004,550 + -0.7 1,004,550 + -0.1 1,004,551 - +1.0 1,004,736 + +0.3 1,004,736 + +0.1 1,004,737 - -1.4 1,004,737 - -0.0 1,004,760 + +1.5 1,004,760 + -0.8 1,004,760 + +3.0 1,004,760 + +0.4 1,004,760 + -0.6 1,004,760 + -0.9 1,004,760 + -2.6 1,004,760 + -0.6 1,004,760 + -0.2 1,004,760 + +0.3 1,004,761 - +1.0 1,004,761 - +0.0 1,004,761 - -0.5 1,004,761 - -0.1 1,004,766 - +0.7 1,004,798 - hemY MCAODC_04970 0.12 -2.9 1,004,815 + hemY MCAODC_04970 0.13 -0.4 1,004,815 + hemY MCAODC_04970 0.13 -0.1 1,004,815 + hemY MCAODC_04970 0.13 -1.0 1,004,815 + hemY MCAODC_04970 0.13 +0.7 1,004,894 + hemY MCAODC_04970 0.20 -0.4 1,004,894 + hemY MCAODC_04970 0.20 +0.8 1,004,895 - hemY MCAODC_04970 0.20 +0.2 1,004,912 + hemY MCAODC_04970 0.21 -0.8 1,004,913 - hemY MCAODC_04970 0.21 -0.2 1,004,913 - hemY MCAODC_04970 0.21 +0.4 1,004,913 - hemY MCAODC_04970 0.21 -0.3 1,005,018 + hemY MCAODC_04970 0.30 +1.0 1,005,018 + hemY MCAODC_04970 0.30 +1.5 1,005,018 + hemY MCAODC_04970 0.30 +1.4 1,005,018 + hemY MCAODC_04970 0.30 -0.3 1,005,022 + hemY MCAODC_04970 0.30 -0.5 1,005,022 + hemY MCAODC_04970 0.30 +1.1 1,005,136 + hemY MCAODC_04970 0.40 +0.8 1,005,136 + hemY MCAODC_04970 0.40 +0.6 1,005,136 + hemY MCAODC_04970 0.40 +0.9 1,005,136 + hemY MCAODC_04970 0.40 +0.8 1,005,136 + hemY MCAODC_04970 0.40 +1.0 1,005,136 + hemY MCAODC_04970 0.40 -1.8 1,005,137 - hemY MCAODC_04970 0.40 +0.3 1,005,137 - hemY MCAODC_04970 0.40 +0.9 1,005,137 - hemY MCAODC_04970 0.40 +0.8 1,005,137 - hemY MCAODC_04970 0.40 +0.5 1,005,223 + hemY MCAODC_04970 0.47 -0.5 1,005,223 + hemY MCAODC_04970 0.47 +0.2 1,005,224 - hemY MCAODC_04970 0.47 -0.5 1,005,226 + hemY MCAODC_04970 0.47 -0.5 1,005,227 - hemY MCAODC_04970 0.48 +0.8 1,005,246 + hemY MCAODC_04970 0.49 +0.2 1,005,246 + hemY MCAODC_04970 0.49 -0.5 1,005,246 + hemY MCAODC_04970 0.49 -1.6 1,005,247 - hemY MCAODC_04970 0.49 -0.9 1,005,247 - hemY MCAODC_04970 0.49 -0.6 1,005,247 - hemY MCAODC_04970 0.49 -0.8 1,005,247 - hemY MCAODC_04970 0.49 -0.7 1,005,247 - hemY MCAODC_04970 0.49 -1.1 1,005,247 - hemY MCAODC_04970 0.49 -2.1 1,005,247 - hemY MCAODC_04970 0.49 +0.0 1,005,248 + hemY MCAODC_04970 0.49 +0.2 1,005,281 + hemY MCAODC_04970 0.52 +0.6 1,005,404 + hemY MCAODC_04970 0.62 +0.4 1,005,404 + hemY MCAODC_04970 0.62 -0.3 1,005,446 - hemY MCAODC_04970 0.66 -0.0 1,005,446 - hemY MCAODC_04970 0.66 -0.0 1,005,498 - hemY MCAODC_04970 0.70 +0.1 1,005,498 - hemY MCAODC_04970 0.70 -0.8 1,005,538 - hemY MCAODC_04970 0.74 +0.4
Or see this region's nucleotide sequence