Strain Fitness in Escherichia coli ECRC101 around MCAODC_04600

Experiment: WM_RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttypA and glnA are separated by 372 nucleotidesglnA and glnL are separated by 173 nucleotides MCAODC_04590: typA - ribosome-dependent GTPase TypA, at 930,121 to 931,944 typA MCAODC_04600: glnA - glutamate--ammonia ligase, at 932,317 to 933,726 glnA MCAODC_04605: glnL - nitrogen regulation protein NR(II), at 933,900 to 934,949 glnL Position (kb) 932 933 934Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 931.410 kb on + strand, within typAat 931.410 kb on + strand, within typAat 931.411 kb on - strand, within typAat 931.411 kb on - strand, within typAat 931.513 kb on + strand, within typAat 931.513 kb on + strand, within typAat 931.513 kb on + strand, within typAat 931.566 kb on + strand, within typAat 931.567 kb on - strand, within typAat 931.590 kb on - strand, within typAat 931.670 kb on - strand, within typAat 931.670 kb on - strand, within typAat 931.681 kb on + strand, within typAat 931.682 kb on - strand, within typAat 931.682 kb on - strand, within typAat 931.682 kb on - strand, within typAat 931.879 kb on + strandat 931.893 kb on + strandat 931.893 kb on + strandat 931.894 kb on - strandat 931.894 kb on - strandat 931.894 kb on - strandat 931.894 kb on - strandat 931.903 kb on + strandat 931.903 kb on + strandat 931.923 kb on + strandat 931.927 kb on - strandat 931.962 kb on + strandat 931.962 kb on + strandat 931.962 kb on + strandat 931.963 kb on - strandat 931.969 kb on - strandat 931.969 kb on - strandat 932.035 kb on + strandat 932.036 kb on - strandat 932.036 kb on - strandat 932.036 kb on - strandat 932.036 kb on - strandat 932.036 kb on - strandat 932.036 kb on - strandat 932.036 kb on - strandat 932.036 kb on - strandat 932.073 kb on - strandat 932.073 kb on - strandat 932.073 kb on - strandat 932.105 kb on - strandat 932.134 kb on - strandat 932.134 kb on - strandat 932.135 kb on + strandat 932.181 kb on + strandat 932.200 kb on + strandat 932.201 kb on - strandat 932.263 kb on + strandat 932.263 kb on + strandat 932.312 kb on - strandat 932.316 kb on + strandat 932.317 kb on - strandat 932.748 kb on + strand, within glnAat 932.957 kb on + strand, within glnAat 933.037 kb on + strand, within glnAat 933.037 kb on + strand, within glnAat 933.038 kb on - strand, within glnAat 933.038 kb on - strand, within glnAat 933.178 kb on + strand, within glnAat 933.178 kb on + strand, within glnAat 933.208 kb on + strand, within glnAat 933.209 kb on - strand, within glnAat 933.277 kb on - strand, within glnAat 933.319 kb on + strand, within glnAat 933.351 kb on + strand, within glnAat 933.509 kb on - strand, within glnAat 933.643 kb on + strandat 933.715 kb on + strandat 933.715 kb on + strandat 933.727 kb on + strandat 933.727 kb on + strandat 933.728 kb on - strandat 933.728 kb on - strandat 933.728 kb on - strandat 933.740 kb on - strandat 933.740 kb on - strandat 933.767 kb on + strandat 933.767 kb on + strandat 933.844 kb on - strandat 933.858 kb on - strandat 933.956 kb on + strandat 933.956 kb on + strandat 933.956 kb on + strandat 933.956 kb on + strandat 934.071 kb on + strand, within glnLat 934.071 kb on + strand, within glnLat 934.072 kb on - strand, within glnLat 934.072 kb on - strand, within glnLat 934.081 kb on + strand, within glnLat 934.081 kb on + strand, within glnLat 934.081 kb on + strand, within glnLat 934.082 kb on - strand, within glnLat 934.082 kb on - strand, within glnLat 934.085 kb on + strand, within glnLat 934.193 kb on + strand, within glnLat 934.250 kb on - strand, within glnLat 934.265 kb on - strand, within glnLat 934.323 kb on - strand, within glnLat 934.323 kb on - strand, within glnLat 934.342 kb on + strand, within glnLat 934.360 kb on + strand, within glnLat 934.361 kb on - strand, within glnLat 934.361 kb on - strand, within glnLat 934.398 kb on + strand, within glnLat 934.398 kb on + strand, within glnLat 934.398 kb on + strand, within glnLat 934.399 kb on - strand, within glnLat 934.400 kb on + strand, within glnLat 934.631 kb on + strand, within glnLat 934.632 kb on - strand, within glnLat 934.714 kb on + strand, within glnLat 934.714 kb on + strand, within glnL

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_RB68
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931,410 + typA MCAODC_04590 0.71 -2.2
931,410 + typA MCAODC_04590 0.71 -3.3
931,411 - typA MCAODC_04590 0.71 -2.7
931,411 - typA MCAODC_04590 0.71 -3.9
931,513 + typA MCAODC_04590 0.76 -3.0
931,513 + typA MCAODC_04590 0.76 -3.7
931,513 + typA MCAODC_04590 0.76 -1.8
931,566 + typA MCAODC_04590 0.79 -2.8
931,567 - typA MCAODC_04590 0.79 -1.9
931,590 - typA MCAODC_04590 0.81 -4.6
931,670 - typA MCAODC_04590 0.85 -3.3
931,670 - typA MCAODC_04590 0.85 -2.2
931,681 + typA MCAODC_04590 0.86 -1.8
931,682 - typA MCAODC_04590 0.86 -2.7
931,682 - typA MCAODC_04590 0.86 -0.3
931,682 - typA MCAODC_04590 0.86 -4.6
931,879 + -2.0
931,893 + -1.0
931,893 + -3.6
931,894 - -0.9
931,894 - -4.0
931,894 - -1.7
931,894 - -3.8
931,903 + -2.5
931,903 + -4.8
931,923 + -3.0
931,927 - -0.2
931,962 + -1.1
931,962 + -1.6
931,962 + -2.5
931,963 - -1.2
931,969 - -0.1
931,969 - +0.1
932,035 + -1.1
932,036 - -0.2
932,036 - +1.2
932,036 - -0.3
932,036 - -1.4
932,036 - -0.4
932,036 - -0.0
932,036 - +0.3
932,036 - -1.9
932,073 - +0.9
932,073 - +0.2
932,073 - -0.0
932,105 - +0.2
932,134 - +0.6
932,134 - -0.2
932,135 + +0.0
932,181 + +0.0
932,200 + +2.0
932,201 - -0.3
932,263 + +0.6
932,263 + -0.8
932,312 - -0.1
932,316 + -1.4
932,317 - -0.0
932,748 + glnA MCAODC_04600 0.31 -0.3
932,957 + glnA MCAODC_04600 0.45 +0.9
933,037 + glnA MCAODC_04600 0.51 +0.3
933,037 + glnA MCAODC_04600 0.51 +0.3
933,038 - glnA MCAODC_04600 0.51 -0.9
933,038 - glnA MCAODC_04600 0.51 +0.8
933,178 + glnA MCAODC_04600 0.61 -0.3
933,178 + glnA MCAODC_04600 0.61 -0.8
933,208 + glnA MCAODC_04600 0.63 -0.3
933,209 - glnA MCAODC_04600 0.63 +2.5
933,277 - glnA MCAODC_04600 0.68 -0.7
933,319 + glnA MCAODC_04600 0.71 -0.4
933,351 + glnA MCAODC_04600 0.73 +1.3
933,509 - glnA MCAODC_04600 0.85 -1.0
933,643 + -1.5
933,715 + -1.7
933,715 + -2.0
933,727 + +0.4
933,727 + -0.1
933,728 - -0.4
933,728 - -0.6
933,728 - +0.4
933,740 - -0.2
933,740 - +0.5
933,767 + -0.1
933,767 + -0.2
933,844 - +0.6
933,858 - +0.1
933,956 + +0.4
933,956 + -1.2
933,956 + -2.9
933,956 + -0.7
934,071 + glnL MCAODC_04605 0.16 -0.9
934,071 + glnL MCAODC_04605 0.16 +0.7
934,072 - glnL MCAODC_04605 0.16 -1.3
934,072 - glnL MCAODC_04605 0.16 -1.1
934,081 + glnL MCAODC_04605 0.17 +0.1
934,081 + glnL MCAODC_04605 0.17 -0.1
934,081 + glnL MCAODC_04605 0.17 +0.4
934,082 - glnL MCAODC_04605 0.17 -1.7
934,082 - glnL MCAODC_04605 0.17 -3.3
934,085 + glnL MCAODC_04605 0.18 -1.5
934,193 + glnL MCAODC_04605 0.28 -1.9
934,250 - glnL MCAODC_04605 0.33 -1.0
934,265 - glnL MCAODC_04605 0.35 -2.7
934,323 - glnL MCAODC_04605 0.40 -1.3
934,323 - glnL MCAODC_04605 0.40 -0.7
934,342 + glnL MCAODC_04605 0.42 -0.1
934,360 + glnL MCAODC_04605 0.44 -0.9
934,361 - glnL MCAODC_04605 0.44 +0.4
934,361 - glnL MCAODC_04605 0.44 -2.3
934,398 + glnL MCAODC_04605 0.47 -0.9
934,398 + glnL MCAODC_04605 0.47 -1.0
934,398 + glnL MCAODC_04605 0.47 -0.7
934,399 - glnL MCAODC_04605 0.48 -1.1
934,400 + glnL MCAODC_04605 0.48 -0.9
934,631 + glnL MCAODC_04605 0.70 +0.2
934,632 - glnL MCAODC_04605 0.70 -0.5
934,714 + glnL MCAODC_04605 0.78 +0.2
934,714 + glnL MCAODC_04605 0.78 +0.1

Or see this region's nucleotide sequence