Strain Fitness in Escherichia coli ECRC101 around MCAODC_03525

Experiment: WM_RB68

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntyfdR and MCAODC_03515 overlap by 10 nucleotidesMCAODC_03515 and MCAODC_03520 overlap by 4 nucleotidesMCAODC_03520 and MCAODC_03525 are separated by 335 nucleotidesMCAODC_03525 and MCAODC_03530 are separated by 344 nucleotidesMCAODC_03530 and MCAODC_03535 are separated by 47 nucleotides MCAODC_03510: yfdR - 5'-deoxynucleotidase, at 706,577 to 707,113 yfdR MCAODC_03515: MCAODC_03515 - Eae protein, at 707,104 to 707,454 _03515 MCAODC_03520: MCAODC_03520 - SAM-dependent methyltransferase, at 707,451 to 707,735 _03520 MCAODC_03525: MCAODC_03525 - hypothetical protein, at 708,071 to 708,268 _03525 MCAODC_03530: MCAODC_03530 - pyocin activator protein PrtN, at 708,613 to 708,894 _03530 MCAODC_03535: MCAODC_03535 - Phage protein, at 708,942 to 709,115 _03535 Position (kb) 708 709Strain fitness (log2 ratio) -2 -1 0 1at 707.081 kb on - strandat 707.097 kb on + strandat 707.098 kb on - strandat 707.191 kb on + strand, within MCAODC_03515at 707.191 kb on + strand, within MCAODC_03515at 707.217 kb on - strand, within MCAODC_03515at 707.217 kb on - strand, within MCAODC_03515at 707.217 kb on - strand, within MCAODC_03515at 707.241 kb on + strand, within MCAODC_03515at 707.241 kb on + strand, within MCAODC_03515at 707.242 kb on - strand, within MCAODC_03515at 707.244 kb on + strand, within MCAODC_03515at 707.244 kb on + strand, within MCAODC_03515at 707.244 kb on + strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.245 kb on - strand, within MCAODC_03515at 707.248 kb on + strand, within MCAODC_03515at 707.249 kb on - strand, within MCAODC_03515at 707.249 kb on - strand, within MCAODC_03515at 707.290 kb on - strand, within MCAODC_03515at 707.290 kb on - strand, within MCAODC_03515at 707.296 kb on - strand, within MCAODC_03515at 707.354 kb on + strand, within MCAODC_03515at 707.354 kb on + strand, within MCAODC_03515at 707.354 kb on + strand, within MCAODC_03515at 707.355 kb on - strand, within MCAODC_03515at 707.358 kb on + strand, within MCAODC_03515at 707.359 kb on - strand, within MCAODC_03515at 707.359 kb on - strand, within MCAODC_03515at 707.359 kb on - strand, within MCAODC_03515at 707.396 kb on - strand, within MCAODC_03515at 707.585 kb on + strand, within MCAODC_03520at 707.603 kb on - strand, within MCAODC_03520at 707.620 kb on + strand, within MCAODC_03520at 707.620 kb on + strand, within MCAODC_03520at 707.620 kb on + strand, within MCAODC_03520at 707.621 kb on - strand, within MCAODC_03520at 707.652 kb on - strand, within MCAODC_03520at 707.653 kb on + strand, within MCAODC_03520at 707.654 kb on - strand, within MCAODC_03520at 707.709 kb on + strandat 707.824 kb on + strandat 707.839 kb on + strandat 707.845 kb on + strandat 707.910 kb on - strandat 707.957 kb on + strandat 707.961 kb on + strandat 707.961 kb on + strandat 707.962 kb on - strandat 707.963 kb on + strandat 707.975 kb on + strandat 707.976 kb on - strandat 708.094 kb on - strand, within MCAODC_03525at 708.094 kb on - strand, within MCAODC_03525at 708.123 kb on + strand, within MCAODC_03525at 708.133 kb on + strand, within MCAODC_03525at 708.144 kb on + strand, within MCAODC_03525at 708.145 kb on - strand, within MCAODC_03525at 708.145 kb on - strand, within MCAODC_03525at 708.178 kb on + strand, within MCAODC_03525at 708.179 kb on - strand, within MCAODC_03525at 708.186 kb on + strand, within MCAODC_03525at 708.187 kb on - strand, within MCAODC_03525at 708.187 kb on - strand, within MCAODC_03525at 708.199 kb on + strand, within MCAODC_03525at 708.199 kb on + strand, within MCAODC_03525at 708.200 kb on - strand, within MCAODC_03525at 708.225 kb on + strand, within MCAODC_03525at 708.225 kb on + strand, within MCAODC_03525at 708.226 kb on - strand, within MCAODC_03525at 708.226 kb on - strand, within MCAODC_03525at 708.234 kb on + strand, within MCAODC_03525at 708.234 kb on + strand, within MCAODC_03525at 708.234 kb on + strand, within MCAODC_03525at 708.235 kb on - strand, within MCAODC_03525at 708.235 kb on - strand, within MCAODC_03525at 708.235 kb on - strand, within MCAODC_03525at 708.235 kb on - strand, within MCAODC_03525at 708.235 kb on - strand, within MCAODC_03525at 708.267 kb on - strandat 708.304 kb on + strandat 708.345 kb on - strandat 708.414 kb on - strandat 708.548 kb on + strandat 708.572 kb on + strandat 708.573 kb on - strandat 708.612 kb on + strandat 708.612 kb on + strandat 708.685 kb on + strand, within MCAODC_03530at 708.685 kb on + strand, within MCAODC_03530at 708.686 kb on - strand, within MCAODC_03530at 708.686 kb on - strand, within MCAODC_03530at 708.686 kb on - strand, within MCAODC_03530at 708.693 kb on + strand, within MCAODC_03530at 708.694 kb on - strand, within MCAODC_03530at 708.732 kb on + strand, within MCAODC_03530at 708.732 kb on + strand, within MCAODC_03530at 708.732 kb on + strand, within MCAODC_03530at 708.732 kb on + strand, within MCAODC_03530at 708.733 kb on - strand, within MCAODC_03530at 708.752 kb on - strand, within MCAODC_03530at 708.793 kb on - strand, within MCAODC_03530at 708.811 kb on + strand, within MCAODC_03530at 708.811 kb on + strand, within MCAODC_03530at 708.811 kb on + strand, within MCAODC_03530at 708.811 kb on + strand, within MCAODC_03530at 708.812 kb on - strand, within MCAODC_03530at 708.812 kb on - strand, within MCAODC_03530at 708.812 kb on - strand, within MCAODC_03530at 708.812 kb on - strand, within MCAODC_03530at 708.815 kb on + strand, within MCAODC_03530at 708.840 kb on + strand, within MCAODC_03530at 708.937 kb on + strandat 708.938 kb on - strandat 709.165 kb on - strandat 709.183 kb on - strandat 709.224 kb on - strandat 709.224 kb on - strandat 709.249 kb on - strandat 709.249 kb on - strandat 709.249 kb on - strandat 709.249 kb on - strandat 709.249 kb on - strandat 709.249 kb on - strandat 709.249 kb on - strandat 709.255 kb on - strandat 709.255 kb on - strandat 709.255 kb on - strandat 709.255 kb on - strandat 709.261 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction WM_RB68
remove
707,081 - -0.2
707,097 + +0.4
707,098 - +0.2
707,191 + MCAODC_03515 0.25 +0.1
707,191 + MCAODC_03515 0.25 +0.7
707,217 - MCAODC_03515 0.32 -0.6
707,217 - MCAODC_03515 0.32 +0.1
707,217 - MCAODC_03515 0.32 +0.9
707,241 + MCAODC_03515 0.39 +0.6
707,241 + MCAODC_03515 0.39 +0.2
707,242 - MCAODC_03515 0.39 -0.6
707,244 + MCAODC_03515 0.40 -0.1
707,244 + MCAODC_03515 0.40 -0.0
707,244 + MCAODC_03515 0.40 +0.6
707,245 - MCAODC_03515 0.40 +0.0
707,245 - MCAODC_03515 0.40 +0.9
707,245 - MCAODC_03515 0.40 -1.2
707,245 - MCAODC_03515 0.40 -1.7
707,245 - MCAODC_03515 0.40 +0.1
707,245 - MCAODC_03515 0.40 -0.3
707,245 - MCAODC_03515 0.40 +0.2
707,245 - MCAODC_03515 0.40 +0.8
707,245 - MCAODC_03515 0.40 -0.7
707,245 - MCAODC_03515 0.40 +1.1
707,245 - MCAODC_03515 0.40 -0.8
707,245 - MCAODC_03515 0.40 -0.8
707,248 + MCAODC_03515 0.41 +1.6
707,249 - MCAODC_03515 0.41 +0.3
707,249 - MCAODC_03515 0.41 -0.0
707,290 - MCAODC_03515 0.53 +0.0
707,290 - MCAODC_03515 0.53 -0.3
707,296 - MCAODC_03515 0.55 +1.2
707,354 + MCAODC_03515 0.71 +1.2
707,354 + MCAODC_03515 0.71 +0.5
707,354 + MCAODC_03515 0.71 +0.6
707,355 - MCAODC_03515 0.72 -0.0
707,358 + MCAODC_03515 0.72 +0.7
707,359 - MCAODC_03515 0.73 +0.1
707,359 - MCAODC_03515 0.73 +1.0
707,359 - MCAODC_03515 0.73 -1.0
707,396 - MCAODC_03515 0.83 +0.1
707,585 + MCAODC_03520 0.47 +0.1
707,603 - MCAODC_03520 0.53 +0.5
707,620 + MCAODC_03520 0.59 -0.5
707,620 + MCAODC_03520 0.59 +0.3
707,620 + MCAODC_03520 0.59 -0.2
707,621 - MCAODC_03520 0.60 -0.0
707,652 - MCAODC_03520 0.71 +0.6
707,653 + MCAODC_03520 0.71 -0.9
707,654 - MCAODC_03520 0.71 -0.2
707,709 + +0.1
707,824 + -0.5
707,839 + -0.0
707,845 + +0.2
707,910 - +0.4
707,957 + +0.8
707,961 + -1.0
707,961 + -1.4
707,962 - -1.8
707,963 + -0.3
707,975 + -0.2
707,976 - -0.1
708,094 - MCAODC_03525 0.12 -0.4
708,094 - MCAODC_03525 0.12 -0.7
708,123 + MCAODC_03525 0.26 +0.1
708,133 + MCAODC_03525 0.31 +0.2
708,144 + MCAODC_03525 0.37 +0.7
708,145 - MCAODC_03525 0.37 -1.4
708,145 - MCAODC_03525 0.37 +0.3
708,178 + MCAODC_03525 0.54 -0.0
708,179 - MCAODC_03525 0.55 +1.3
708,186 + MCAODC_03525 0.58 +0.3
708,187 - MCAODC_03525 0.59 +0.3
708,187 - MCAODC_03525 0.59 +0.8
708,199 + MCAODC_03525 0.65 +0.1
708,199 + MCAODC_03525 0.65 +0.7
708,200 - MCAODC_03525 0.65 -0.1
708,225 + MCAODC_03525 0.78 -0.6
708,225 + MCAODC_03525 0.78 +1.6
708,226 - MCAODC_03525 0.78 +0.0
708,226 - MCAODC_03525 0.78 -0.2
708,234 + MCAODC_03525 0.82 -0.8
708,234 + MCAODC_03525 0.82 -2.1
708,234 + MCAODC_03525 0.82 -0.4
708,235 - MCAODC_03525 0.83 +0.5
708,235 - MCAODC_03525 0.83 +1.3
708,235 - MCAODC_03525 0.83 +1.1
708,235 - MCAODC_03525 0.83 +0.5
708,235 - MCAODC_03525 0.83 -0.3
708,267 - +0.4
708,304 + +0.6
708,345 - +1.6
708,414 - +0.0
708,548 + -1.1
708,572 + -0.8
708,573 - +0.4
708,612 + +0.6
708,612 + -0.1
708,685 + MCAODC_03530 0.26 +0.5
708,685 + MCAODC_03530 0.26 -1.9
708,686 - MCAODC_03530 0.26 -0.5
708,686 - MCAODC_03530 0.26 -0.4
708,686 - MCAODC_03530 0.26 +0.8
708,693 + MCAODC_03530 0.28 -0.6
708,694 - MCAODC_03530 0.29 -1.1
708,732 + MCAODC_03530 0.42 -0.9
708,732 + MCAODC_03530 0.42 +0.5
708,732 + MCAODC_03530 0.42 +0.1
708,732 + MCAODC_03530 0.42 -0.4
708,733 - MCAODC_03530 0.43 -0.2
708,752 - MCAODC_03530 0.49 +0.4
708,793 - MCAODC_03530 0.64 -1.8
708,811 + MCAODC_03530 0.70 +0.1
708,811 + MCAODC_03530 0.70 -0.7
708,811 + MCAODC_03530 0.70 +0.2
708,811 + MCAODC_03530 0.70 -0.2
708,812 - MCAODC_03530 0.71 +0.1
708,812 - MCAODC_03530 0.71 +0.4
708,812 - MCAODC_03530 0.71 -1.2
708,812 - MCAODC_03530 0.71 +0.1
708,815 + MCAODC_03530 0.72 -0.3
708,840 + MCAODC_03530 0.80 -0.2
708,937 + +0.5
708,938 - +0.4
709,165 - -0.1
709,183 - +0.0
709,224 - -0.4
709,224 - -1.1
709,249 - -2.0
709,249 - -0.6
709,249 - -0.2
709,249 - +0.2
709,249 - -0.4
709,249 - +0.2
709,249 - +0.8
709,255 - -0.3
709,255 - +0.5
709,255 - +0.2
709,255 - -1.8
709,261 - +0.7

Or see this region's nucleotide sequence