Experiment: WM_RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nrfD and nrfC overlap by 4 nucleotides nrfC and nrfB overlap by 4 nucleotides nrfB and nrfA are separated by 44 nucleotides
MCAODC_03315: nrfD - cytochrome c nitrite reductase subunit NrfD, at 669,484 to 670,440
nrfD
MCAODC_03320: nrfC - cytochrome c nitrite reductase Fe-S protein, at 670,437 to 671,108
nrfC
MCAODC_03325: nrfB - cytochrome c nitrite reductase pentaheme subunit, at 671,105 to 671,671
nrfB
MCAODC_03330: nrfA - ammonia-forming nitrite reductase cytochrome c552 subunit, at 671,716 to 673,152
nrfA
Position (kb) 671
672 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 670.130 kb on + strand, within nrfD at 670.130 kb on + strand, within nrfD at 670.130 kb on + strand, within nrfD at 670.130 kb on + strand, within nrfD at 670.130 kb on + strand, within nrfD at 670.130 kb on + strand, within nrfD at 670.130 kb on + strand, within nrfD at 670.131 kb on - strand, within nrfD at 670.131 kb on - strand, within nrfD at 670.131 kb on - strand, within nrfD at 670.131 kb on - strand, within nrfD at 670.170 kb on + strand, within nrfD at 670.170 kb on + strand, within nrfD at 670.178 kb on + strand, within nrfD at 670.328 kb on - strand, within nrfD at 670.379 kb on + strand at 670.379 kb on + strand at 670.380 kb on - strand at 670.461 kb on - strand at 670.461 kb on - strand at 670.475 kb on - strand at 670.507 kb on + strand, within nrfC at 670.640 kb on + strand, within nrfC at 670.686 kb on - strand, within nrfC at 670.721 kb on - strand, within nrfC at 670.721 kb on - strand, within nrfC at 670.896 kb on - strand, within nrfC at 670.952 kb on + strand, within nrfC at 671.119 kb on + strand at 671.192 kb on - strand, within nrfB at 671.210 kb on + strand, within nrfB at 671.210 kb on + strand, within nrfB at 671.210 kb on + strand, within nrfB at 671.211 kb on - strand, within nrfB at 671.211 kb on - strand, within nrfB at 671.211 kb on - strand, within nrfB at 671.224 kb on + strand, within nrfB at 671.224 kb on + strand, within nrfB at 671.225 kb on - strand, within nrfB at 671.225 kb on - strand, within nrfB at 671.273 kb on + strand, within nrfB at 671.332 kb on + strand, within nrfB at 671.332 kb on + strand, within nrfB at 671.332 kb on + strand, within nrfB at 671.332 kb on + strand, within nrfB at 671.332 kb on + strand, within nrfB at 671.332 kb on + strand, within nrfB at 671.332 kb on + strand, within nrfB at 671.333 kb on - strand, within nrfB at 671.333 kb on - strand, within nrfB at 671.333 kb on - strand, within nrfB at 671.333 kb on - strand, within nrfB at 671.333 kb on - strand, within nrfB at 671.333 kb on - strand, within nrfB at 671.361 kb on + strand, within nrfB at 671.361 kb on + strand, within nrfB at 671.362 kb on - strand, within nrfB at 671.362 kb on - strand, within nrfB at 671.362 kb on - strand, within nrfB at 671.471 kb on - strand, within nrfB at 671.494 kb on + strand, within nrfB at 671.494 kb on + strand, within nrfB at 671.494 kb on + strand, within nrfB at 671.494 kb on + strand, within nrfB at 671.495 kb on - strand, within nrfB at 671.495 kb on - strand, within nrfB at 671.495 kb on - strand, within nrfB at 671.495 kb on - strand, within nrfB at 671.495 kb on - strand, within nrfB at 671.512 kb on + strand, within nrfB at 671.513 kb on - strand, within nrfB at 671.513 kb on - strand, within nrfB at 671.543 kb on - strand, within nrfB at 671.554 kb on + strand, within nrfB at 671.593 kb on + strand, within nrfB at 671.600 kb on - strand, within nrfB at 671.648 kb on + strand at 671.649 kb on - strand at 671.652 kb on - strand at 671.660 kb on + strand at 671.660 kb on + strand at 671.660 kb on + strand at 671.661 kb on - strand at 671.661 kb on - strand at 671.661 kb on - strand at 671.663 kb on + strand at 671.664 kb on - strand at 671.671 kb on + strand at 671.671 kb on + strand at 671.672 kb on - strand at 671.740 kb on - strand at 671.979 kb on + strand, within nrfA at 671.979 kb on + strand, within nrfA at 671.979 kb on + strand, within nrfA at 671.980 kb on - strand, within nrfA at 671.980 kb on - strand, within nrfA at 672.156 kb on + strand, within nrfA at 672.228 kb on + strand, within nrfA at 672.240 kb on + strand, within nrfA at 672.249 kb on + strand, within nrfA at 672.249 kb on + strand, within nrfA at 672.260 kb on + strand, within nrfA at 672.260 kb on + strand, within nrfA at 672.294 kb on + strand, within nrfA at 672.295 kb on - strand, within nrfA at 672.295 kb on - strand, within nrfA at 672.354 kb on - strand, within nrfA at 672.354 kb on - strand, within nrfA at 672.400 kb on - strand, within nrfA at 672.428 kb on + strand, within nrfA at 672.431 kb on + strand, within nrfA at 672.431 kb on + strand, within nrfA at 672.432 kb on - strand, within nrfA at 672.441 kb on + strand, within nrfA at 672.503 kb on + strand, within nrfA at 672.504 kb on - strand, within nrfA at 672.506 kb on + strand, within nrfA at 672.506 kb on + strand, within nrfA at 672.602 kb on + strand, within nrfA at 672.602 kb on + strand, within nrfA at 672.661 kb on - strand, within nrfA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_RB68 remove 670,130 + nrfD MCAODC_03315 0.68 +0.2 670,130 + nrfD MCAODC_03315 0.68 -1.2 670,130 + nrfD MCAODC_03315 0.68 -1.1 670,130 + nrfD MCAODC_03315 0.68 -0.3 670,130 + nrfD MCAODC_03315 0.68 +0.4 670,130 + nrfD MCAODC_03315 0.68 -0.4 670,130 + nrfD MCAODC_03315 0.68 +0.9 670,131 - nrfD MCAODC_03315 0.68 +0.8 670,131 - nrfD MCAODC_03315 0.68 -0.7 670,131 - nrfD MCAODC_03315 0.68 -1.2 670,131 - nrfD MCAODC_03315 0.68 +0.5 670,170 + nrfD MCAODC_03315 0.72 +3.2 670,170 + nrfD MCAODC_03315 0.72 +1.1 670,178 + nrfD MCAODC_03315 0.73 -0.6 670,328 - nrfD MCAODC_03315 0.88 -0.7 670,379 + -0.0 670,379 + -0.2 670,380 - -0.9 670,461 - -0.7 670,461 - -0.5 670,475 - -0.4 670,507 + nrfC MCAODC_03320 0.10 +0.1 670,640 + nrfC MCAODC_03320 0.30 +0.3 670,686 - nrfC MCAODC_03320 0.37 -1.7 670,721 - nrfC MCAODC_03320 0.42 +0.2 670,721 - nrfC MCAODC_03320 0.42 +0.7 670,896 - nrfC MCAODC_03320 0.68 +0.8 670,952 + nrfC MCAODC_03320 0.77 -1.4 671,119 + +1.4 671,192 - nrfB MCAODC_03325 0.15 +0.4 671,210 + nrfB MCAODC_03325 0.19 +0.6 671,210 + nrfB MCAODC_03325 0.19 -1.0 671,210 + nrfB MCAODC_03325 0.19 -0.2 671,211 - nrfB MCAODC_03325 0.19 +0.2 671,211 - nrfB MCAODC_03325 0.19 +2.2 671,211 - nrfB MCAODC_03325 0.19 -0.4 671,224 + nrfB MCAODC_03325 0.21 -0.2 671,224 + nrfB MCAODC_03325 0.21 -0.2 671,225 - nrfB MCAODC_03325 0.21 +0.6 671,225 - nrfB MCAODC_03325 0.21 +0.4 671,273 + nrfB MCAODC_03325 0.30 +1.0 671,332 + nrfB MCAODC_03325 0.40 -1.4 671,332 + nrfB MCAODC_03325 0.40 -0.3 671,332 + nrfB MCAODC_03325 0.40 -0.6 671,332 + nrfB MCAODC_03325 0.40 -0.3 671,332 + nrfB MCAODC_03325 0.40 +0.1 671,332 + nrfB MCAODC_03325 0.40 +0.6 671,332 + nrfB MCAODC_03325 0.40 -0.5 671,333 - nrfB MCAODC_03325 0.40 +0.3 671,333 - nrfB MCAODC_03325 0.40 +0.1 671,333 - nrfB MCAODC_03325 0.40 -0.0 671,333 - nrfB MCAODC_03325 0.40 +0.4 671,333 - nrfB MCAODC_03325 0.40 -1.4 671,333 - nrfB MCAODC_03325 0.40 -1.0 671,361 + nrfB MCAODC_03325 0.45 +0.7 671,361 + nrfB MCAODC_03325 0.45 -0.4 671,362 - nrfB MCAODC_03325 0.45 +1.1 671,362 - nrfB MCAODC_03325 0.45 +0.3 671,362 - nrfB MCAODC_03325 0.45 +0.3 671,471 - nrfB MCAODC_03325 0.65 +0.1 671,494 + nrfB MCAODC_03325 0.69 +0.6 671,494 + nrfB MCAODC_03325 0.69 +0.2 671,494 + nrfB MCAODC_03325 0.69 -0.2 671,494 + nrfB MCAODC_03325 0.69 +0.3 671,495 - nrfB MCAODC_03325 0.69 -0.8 671,495 - nrfB MCAODC_03325 0.69 +1.3 671,495 - nrfB MCAODC_03325 0.69 +0.9 671,495 - nrfB MCAODC_03325 0.69 +0.1 671,495 - nrfB MCAODC_03325 0.69 -0.0 671,512 + nrfB MCAODC_03325 0.72 +1.0 671,513 - nrfB MCAODC_03325 0.72 +0.7 671,513 - nrfB MCAODC_03325 0.72 -0.5 671,543 - nrfB MCAODC_03325 0.77 +0.3 671,554 + nrfB MCAODC_03325 0.79 -1.4 671,593 + nrfB MCAODC_03325 0.86 +1.2 671,600 - nrfB MCAODC_03325 0.87 -0.2 671,648 + +1.2 671,649 - -1.3 671,652 - -0.4 671,660 + +0.7 671,660 + +0.6 671,660 + -1.5 671,661 - +1.5 671,661 - -0.0 671,661 - -0.3 671,663 + -1.3 671,664 - +0.5 671,671 + +0.4 671,671 + +0.1 671,672 - -1.4 671,740 - +0.3 671,979 + nrfA MCAODC_03330 0.18 -1.0 671,979 + nrfA MCAODC_03330 0.18 -1.9 671,979 + nrfA MCAODC_03330 0.18 +0.2 671,980 - nrfA MCAODC_03330 0.18 +0.6 671,980 - nrfA MCAODC_03330 0.18 +1.1 672,156 + nrfA MCAODC_03330 0.31 -1.2 672,228 + nrfA MCAODC_03330 0.36 -0.3 672,240 + nrfA MCAODC_03330 0.36 +0.3 672,249 + nrfA MCAODC_03330 0.37 +0.5 672,249 + nrfA MCAODC_03330 0.37 -0.4 672,260 + nrfA MCAODC_03330 0.38 +0.4 672,260 + nrfA MCAODC_03330 0.38 +0.3 672,294 + nrfA MCAODC_03330 0.40 +0.3 672,295 - nrfA MCAODC_03330 0.40 -1.0 672,295 - nrfA MCAODC_03330 0.40 -0.3 672,354 - nrfA MCAODC_03330 0.44 +0.2 672,354 - nrfA MCAODC_03330 0.44 +1.3 672,400 - nrfA MCAODC_03330 0.48 +0.4 672,428 + nrfA MCAODC_03330 0.50 -0.3 672,431 + nrfA MCAODC_03330 0.50 -1.3 672,431 + nrfA MCAODC_03330 0.50 -0.4 672,432 - nrfA MCAODC_03330 0.50 +0.1 672,441 + nrfA MCAODC_03330 0.50 -1.2 672,503 + nrfA MCAODC_03330 0.55 +0.2 672,504 - nrfA MCAODC_03330 0.55 +0.3 672,506 + nrfA MCAODC_03330 0.55 +0.7 672,506 + nrfA MCAODC_03330 0.55 +0.2 672,602 + nrfA MCAODC_03330 0.62 +0.2 672,602 + nrfA MCAODC_03330 0.62 -0.0 672,661 - nrfA MCAODC_03330 0.66 +0.5
Or see this region's nucleotide sequence