Strain Fitness in Escherichia coli ECRC101 around MCAODC_03260

Experiment: WM_RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjcS and ytcA are separated by 208 nucleotidesytcA and mdtN are separated by 18 nucleotides MCAODC_03255: yjcS - alkyl sulfatase YjcS, at 654,783 to 656,768 yjcS MCAODC_03260: ytcA - Uncharacterized protein YtcA, at 656,977 to 657,252 ytcA MCAODC_03265: mdtN - multidrug efflux transporter periplasmic adaptor subunit MdtN, at 657,271 to 658,302 mdtN Position (kb) 656 657 658Strain fitness (log2 ratio) -2 -1 0 1 2at 655.982 kb on + strand, within yjcSat 655.982 kb on + strand, within yjcSat 655.982 kb on + strand, within yjcSat 655.983 kb on - strand, within yjcSat 656.007 kb on - strand, within yjcSat 656.007 kb on - strand, within yjcSat 656.026 kb on - strand, within yjcSat 656.028 kb on + strand, within yjcSat 656.028 kb on + strand, within yjcSat 656.061 kb on + strand, within yjcSat 656.062 kb on - strand, within yjcSat 656.062 kb on - strand, within yjcSat 656.062 kb on - strand, within yjcSat 656.063 kb on + strand, within yjcSat 656.063 kb on + strand, within yjcSat 656.063 kb on + strand, within yjcSat 656.064 kb on - strand, within yjcSat 656.064 kb on - strand, within yjcSat 656.064 kb on - strand, within yjcSat 656.079 kb on + strand, within yjcSat 656.082 kb on + strand, within yjcSat 656.082 kb on + strand, within yjcSat 656.083 kb on - strand, within yjcSat 656.083 kb on - strand, within yjcSat 656.122 kb on + strand, within yjcSat 656.122 kb on + strand, within yjcSat 656.123 kb on - strand, within yjcSat 656.123 kb on - strand, within yjcSat 656.140 kb on - strand, within yjcSat 656.140 kb on - strand, within yjcSat 656.140 kb on - strand, within yjcSat 656.195 kb on + strand, within yjcSat 656.196 kb on - strand, within yjcSat 656.196 kb on - strand, within yjcSat 656.227 kb on + strand, within yjcSat 656.227 kb on + strand, within yjcSat 656.228 kb on - strand, within yjcSat 656.228 kb on - strand, within yjcSat 656.340 kb on + strand, within yjcSat 656.341 kb on - strand, within yjcSat 656.378 kb on + strand, within yjcSat 656.378 kb on + strand, within yjcSat 656.378 kb on + strand, within yjcSat 656.378 kb on + strand, within yjcSat 656.378 kb on + strand, within yjcSat 656.378 kb on + strand, within yjcSat 656.379 kb on - strand, within yjcSat 656.379 kb on - strand, within yjcSat 656.379 kb on - strand, within yjcSat 656.493 kb on - strand, within yjcSat 656.511 kb on - strand, within yjcSat 656.511 kb on - strand, within yjcSat 656.511 kb on - strand, within yjcSat 656.558 kb on + strand, within yjcSat 656.558 kb on + strand, within yjcSat 656.558 kb on + strand, within yjcSat 656.559 kb on - strand, within yjcSat 656.559 kb on - strand, within yjcSat 656.562 kb on + strand, within yjcSat 656.567 kb on + strand, within yjcSat 656.568 kb on - strand, within yjcSat 656.568 kb on - strand, within yjcSat 656.601 kb on + strandat 656.601 kb on + strandat 656.601 kb on + strandat 656.602 kb on - strandat 656.602 kb on - strandat 656.851 kb on + strandat 656.852 kb on - strandat 656.852 kb on - strandat 657.171 kb on + strand, within ytcAat 657.256 kb on - strandat 657.256 kb on - strandat 657.256 kb on - strandat 657.279 kb on + strandat 657.321 kb on - strandat 657.387 kb on + strand, within mdtNat 657.387 kb on + strand, within mdtNat 657.388 kb on - strand, within mdtNat 657.388 kb on - strand, within mdtNat 657.388 kb on - strand, within mdtNat 657.388 kb on - strand, within mdtNat 657.388 kb on - strand, within mdtNat 657.397 kb on + strand, within mdtNat 657.397 kb on + strand, within mdtNat 657.397 kb on + strand, within mdtNat 657.397 kb on + strand, within mdtNat 657.397 kb on + strand, within mdtNat 657.397 kb on + strand, within mdtNat 657.398 kb on - strand, within mdtNat 657.398 kb on - strand, within mdtNat 657.412 kb on - strand, within mdtNat 657.412 kb on - strand, within mdtNat 657.449 kb on + strand, within mdtNat 657.449 kb on + strand, within mdtNat 657.449 kb on + strand, within mdtNat 657.450 kb on - strand, within mdtNat 657.450 kb on - strand, within mdtNat 657.576 kb on + strand, within mdtNat 657.576 kb on + strand, within mdtNat 657.576 kb on + strand, within mdtNat 657.675 kb on + strand, within mdtNat 657.675 kb on + strand, within mdtNat 657.675 kb on + strand, within mdtNat 657.675 kb on + strand, within mdtNat 657.675 kb on + strand, within mdtNat 657.675 kb on + strand, within mdtNat 657.676 kb on - strand, within mdtNat 657.676 kb on - strand, within mdtNat 657.676 kb on - strand, within mdtNat 657.676 kb on - strand, within mdtNat 657.680 kb on + strand, within mdtNat 657.774 kb on + strand, within mdtNat 657.774 kb on + strand, within mdtNat 657.774 kb on + strand, within mdtNat 657.774 kb on + strand, within mdtNat 657.775 kb on - strand, within mdtNat 657.775 kb on - strand, within mdtNat 657.782 kb on + strand, within mdtNat 657.782 kb on + strand, within mdtNat 657.833 kb on + strand, within mdtNat 657.833 kb on + strand, within mdtNat 657.833 kb on + strand, within mdtNat 657.834 kb on - strand, within mdtNat 657.834 kb on - strand, within mdtNat 657.834 kb on - strand, within mdtNat 657.982 kb on - strand, within mdtNat 657.986 kb on + strand, within mdtNat 658.006 kb on + strand, within mdtNat 658.056 kb on + strand, within mdtNat 658.056 kb on + strand, within mdtNat 658.057 kb on - strand, within mdtNat 658.188 kb on + strand, within mdtNat 658.189 kb on - strand, within mdtNat 658.191 kb on + strand, within mdtNat 658.191 kb on + strand, within mdtNat 658.192 kb on - strand, within mdtNat 658.240 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_RB68
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655,982 + yjcS MCAODC_03255 0.60 +0.2
655,982 + yjcS MCAODC_03255 0.60 -0.0
655,982 + yjcS MCAODC_03255 0.60 -0.2
655,983 - yjcS MCAODC_03255 0.60 +0.3
656,007 - yjcS MCAODC_03255 0.62 +1.0
656,007 - yjcS MCAODC_03255 0.62 -0.0
656,026 - yjcS MCAODC_03255 0.63 +0.8
656,028 + yjcS MCAODC_03255 0.63 +0.3
656,028 + yjcS MCAODC_03255 0.63 -1.0
656,061 + yjcS MCAODC_03255 0.64 +0.5
656,062 - yjcS MCAODC_03255 0.64 -0.5
656,062 - yjcS MCAODC_03255 0.64 +0.7
656,062 - yjcS MCAODC_03255 0.64 +0.3
656,063 + yjcS MCAODC_03255 0.64 +0.6
656,063 + yjcS MCAODC_03255 0.64 +1.5
656,063 + yjcS MCAODC_03255 0.64 +0.0
656,064 - yjcS MCAODC_03255 0.65 +0.7
656,064 - yjcS MCAODC_03255 0.65 -0.2
656,064 - yjcS MCAODC_03255 0.65 -1.4
656,079 + yjcS MCAODC_03255 0.65 +0.9
656,082 + yjcS MCAODC_03255 0.65 -0.2
656,082 + yjcS MCAODC_03255 0.65 +0.0
656,083 - yjcS MCAODC_03255 0.65 -0.3
656,083 - yjcS MCAODC_03255 0.65 +1.4
656,122 + yjcS MCAODC_03255 0.67 +0.5
656,122 + yjcS MCAODC_03255 0.67 +0.3
656,123 - yjcS MCAODC_03255 0.67 +1.1
656,123 - yjcS MCAODC_03255 0.67 +0.8
656,140 - yjcS MCAODC_03255 0.68 -0.3
656,140 - yjcS MCAODC_03255 0.68 +1.2
656,140 - yjcS MCAODC_03255 0.68 +0.9
656,195 + yjcS MCAODC_03255 0.71 -1.1
656,196 - yjcS MCAODC_03255 0.71 -0.3
656,196 - yjcS MCAODC_03255 0.71 +0.3
656,227 + yjcS MCAODC_03255 0.73 +0.1
656,227 + yjcS MCAODC_03255 0.73 +0.0
656,228 - yjcS MCAODC_03255 0.73 +0.4
656,228 - yjcS MCAODC_03255 0.73 -0.6
656,340 + yjcS MCAODC_03255 0.78 +0.9
656,341 - yjcS MCAODC_03255 0.78 -1.9
656,378 + yjcS MCAODC_03255 0.80 +0.3
656,378 + yjcS MCAODC_03255 0.80 +1.1
656,378 + yjcS MCAODC_03255 0.80 -0.5
656,378 + yjcS MCAODC_03255 0.80 +0.3
656,378 + yjcS MCAODC_03255 0.80 +0.1
656,378 + yjcS MCAODC_03255 0.80 -0.6
656,379 - yjcS MCAODC_03255 0.80 -0.1
656,379 - yjcS MCAODC_03255 0.80 +0.1
656,379 - yjcS MCAODC_03255 0.80 -0.1
656,493 - yjcS MCAODC_03255 0.86 +0.1
656,511 - yjcS MCAODC_03255 0.87 +0.2
656,511 - yjcS MCAODC_03255 0.87 -1.1
656,511 - yjcS MCAODC_03255 0.87 -2.7
656,558 + yjcS MCAODC_03255 0.89 +0.8
656,558 + yjcS MCAODC_03255 0.89 -0.7
656,558 + yjcS MCAODC_03255 0.89 -0.1
656,559 - yjcS MCAODC_03255 0.89 -0.2
656,559 - yjcS MCAODC_03255 0.89 -0.0
656,562 + yjcS MCAODC_03255 0.90 -0.2
656,567 + yjcS MCAODC_03255 0.90 +1.6
656,568 - yjcS MCAODC_03255 0.90 +1.2
656,568 - yjcS MCAODC_03255 0.90 -0.1
656,601 + +0.9
656,601 + -0.6
656,601 + -2.0
656,602 - +1.0
656,602 - -1.3
656,851 + +1.5
656,852 - -0.3
656,852 - -2.4
657,171 + ytcA MCAODC_03260 0.70 +0.3
657,256 - -2.1
657,256 - +0.3
657,256 - +0.6
657,279 + +1.8
657,321 - -0.4
657,387 + mdtN MCAODC_03265 0.11 -0.2
657,387 + mdtN MCAODC_03265 0.11 -0.0
657,388 - mdtN MCAODC_03265 0.11 +0.5
657,388 - mdtN MCAODC_03265 0.11 -0.8
657,388 - mdtN MCAODC_03265 0.11 -0.3
657,388 - mdtN MCAODC_03265 0.11 -0.0
657,388 - mdtN MCAODC_03265 0.11 -1.0
657,397 + mdtN MCAODC_03265 0.12 -1.1
657,397 + mdtN MCAODC_03265 0.12 +0.3
657,397 + mdtN MCAODC_03265 0.12 +0.1
657,397 + mdtN MCAODC_03265 0.12 +0.5
657,397 + mdtN MCAODC_03265 0.12 +0.3
657,397 + mdtN MCAODC_03265 0.12 -0.1
657,398 - mdtN MCAODC_03265 0.12 -0.4
657,398 - mdtN MCAODC_03265 0.12 -1.3
657,412 - mdtN MCAODC_03265 0.14 +0.4
657,412 - mdtN MCAODC_03265 0.14 -1.3
657,449 + mdtN MCAODC_03265 0.17 -0.4
657,449 + mdtN MCAODC_03265 0.17 +0.2
657,449 + mdtN MCAODC_03265 0.17 -0.5
657,450 - mdtN MCAODC_03265 0.17 +0.6
657,450 - mdtN MCAODC_03265 0.17 -0.2
657,576 + mdtN MCAODC_03265 0.30 +0.7
657,576 + mdtN MCAODC_03265 0.30 +0.4
657,576 + mdtN MCAODC_03265 0.30 -0.3
657,675 + mdtN MCAODC_03265 0.39 -0.8
657,675 + mdtN MCAODC_03265 0.39 +1.2
657,675 + mdtN MCAODC_03265 0.39 +0.4
657,675 + mdtN MCAODC_03265 0.39 -0.3
657,675 + mdtN MCAODC_03265 0.39 +0.8
657,675 + mdtN MCAODC_03265 0.39 -1.1
657,676 - mdtN MCAODC_03265 0.39 +0.9
657,676 - mdtN MCAODC_03265 0.39 -0.4
657,676 - mdtN MCAODC_03265 0.39 -0.2
657,676 - mdtN MCAODC_03265 0.39 -0.4
657,680 + mdtN MCAODC_03265 0.40 +0.8
657,774 + mdtN MCAODC_03265 0.49 +0.2
657,774 + mdtN MCAODC_03265 0.49 -0.3
657,774 + mdtN MCAODC_03265 0.49 +1.1
657,774 + mdtN MCAODC_03265 0.49 +0.7
657,775 - mdtN MCAODC_03265 0.49 -1.1
657,775 - mdtN MCAODC_03265 0.49 -0.9
657,782 + mdtN MCAODC_03265 0.50 -0.1
657,782 + mdtN MCAODC_03265 0.50 -0.2
657,833 + mdtN MCAODC_03265 0.54 -0.3
657,833 + mdtN MCAODC_03265 0.54 -0.4
657,833 + mdtN MCAODC_03265 0.54 +0.7
657,834 - mdtN MCAODC_03265 0.55 -0.4
657,834 - mdtN MCAODC_03265 0.55 +0.5
657,834 - mdtN MCAODC_03265 0.55 +0.5
657,982 - mdtN MCAODC_03265 0.69 +0.1
657,986 + mdtN MCAODC_03265 0.69 +0.8
658,006 + mdtN MCAODC_03265 0.71 +1.3
658,056 + mdtN MCAODC_03265 0.76 +0.6
658,056 + mdtN MCAODC_03265 0.76 -0.4
658,057 - mdtN MCAODC_03265 0.76 +0.1
658,188 + mdtN MCAODC_03265 0.89 -0.2
658,189 - mdtN MCAODC_03265 0.89 -0.7
658,191 + mdtN MCAODC_03265 0.89 +2.5
658,191 + mdtN MCAODC_03265 0.89 -0.3
658,192 - mdtN MCAODC_03265 0.89 +1.4
658,240 - -0.1

Or see this region's nucleotide sequence