Experiment: WM_RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydaE and fba are separated by 14 nucleotides fba and rbsK overlap by 4 nucleotides rbsK and ompR overlap by 4 nucleotides ompR and yjcS are separated by 290 nucleotides
MCAODC_03235: ydaE - D-lyxose/D-mannose isomerase, at 651,232 to 651,915
ydaE
MCAODC_03240: fba - ketose 1,6-bisphosphate aldolase, at 651,930 to 652,790
fba
MCAODC_03245: rbsK - sugar kinase, at 652,787 to 653,788
rbsK
MCAODC_03250: ompR - DNA-binding response regulator, at 653,785 to 654,492
ompR
MCAODC_03255: yjcS - alkyl sulfatase YjcS, at 654,783 to 656,768
yjcS
Position (kb) 652
653
654 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 651.848 kb on - strand at 651.884 kb on + strand at 651.885 kb on - strand at 651.930 kb on - strand at 651.982 kb on - strand at 652.064 kb on + strand, within fba at 652.064 kb on + strand, within fba at 652.084 kb on + strand, within fba at 652.085 kb on - strand, within fba at 652.085 kb on - strand, within fba at 652.091 kb on + strand, within fba at 652.095 kb on + strand, within fba at 652.095 kb on + strand, within fba at 652.097 kb on + strand, within fba at 652.097 kb on + strand, within fba at 652.165 kb on + strand, within fba at 652.166 kb on - strand, within fba at 652.257 kb on + strand, within fba at 652.369 kb on - strand, within fba at 652.369 kb on - strand, within fba at 652.480 kb on - strand, within fba at 652.549 kb on + strand, within fba at 652.549 kb on + strand, within fba at 652.550 kb on - strand, within fba at 652.552 kb on + strand, within fba at 652.552 kb on + strand, within fba at 652.553 kb on - strand, within fba at 652.553 kb on - strand, within fba at 652.571 kb on + strand, within fba at 652.626 kb on + strand, within fba at 652.626 kb on + strand, within fba at 652.692 kb on + strand, within fba at 652.693 kb on - strand, within fba at 652.798 kb on + strand at 652.822 kb on + strand at 652.822 kb on + strand at 652.823 kb on - strand at 652.823 kb on - strand at 652.823 kb on - strand at 652.965 kb on + strand, within rbsK at 653.007 kb on - strand, within rbsK at 653.007 kb on - strand, within rbsK at 653.007 kb on - strand, within rbsK at 653.007 kb on - strand, within rbsK at 653.007 kb on - strand, within rbsK at 653.063 kb on - strand, within rbsK at 653.208 kb on - strand, within rbsK at 653.211 kb on + strand, within rbsK at 653.211 kb on + strand, within rbsK at 653.211 kb on + strand, within rbsK at 653.211 kb on + strand, within rbsK at 653.211 kb on + strand, within rbsK at 653.212 kb on - strand, within rbsK at 653.212 kb on - strand, within rbsK at 653.212 kb on - strand, within rbsK at 653.212 kb on - strand, within rbsK at 653.212 kb on - strand, within rbsK at 653.212 kb on - strand, within rbsK at 653.261 kb on - strand, within rbsK at 653.291 kb on - strand, within rbsK at 653.393 kb on - strand, within rbsK at 653.456 kb on - strand, within rbsK at 653.456 kb on - strand, within rbsK at 653.456 kb on - strand, within rbsK at 653.464 kb on + strand, within rbsK at 653.464 kb on + strand, within rbsK at 653.464 kb on + strand, within rbsK at 653.464 kb on + strand, within rbsK at 653.491 kb on - strand, within rbsK at 653.590 kb on - strand, within rbsK at 653.649 kb on + strand, within rbsK at 653.649 kb on + strand, within rbsK at 653.650 kb on - strand, within rbsK at 653.650 kb on - strand, within rbsK at 653.652 kb on - strand, within rbsK at 653.652 kb on - strand, within rbsK at 653.787 kb on - strand at 653.787 kb on - strand at 653.810 kb on + strand at 653.832 kb on + strand at 653.832 kb on + strand at 653.832 kb on + strand at 653.875 kb on + strand, within ompR at 653.888 kb on - strand, within ompR at 653.890 kb on + strand, within ompR at 653.890 kb on + strand, within ompR at 653.891 kb on - strand, within ompR at 653.993 kb on - strand, within ompR at 654.191 kb on + strand, within ompR at 654.192 kb on - strand, within ompR at 654.192 kb on - strand, within ompR at 654.192 kb on - strand, within ompR at 654.192 kb on - strand, within ompR at 654.192 kb on - strand, within ompR at 654.192 kb on - strand, within ompR at 654.192 kb on - strand, within ompR at 654.192 kb on - strand, within ompR at 654.298 kb on + strand, within ompR at 654.330 kb on + strand, within ompR at 654.330 kb on + strand, within ompR at 654.330 kb on + strand, within ompR at 654.331 kb on - strand, within ompR at 654.369 kb on + strand, within ompR at 654.377 kb on - strand, within ompR at 654.411 kb on + strand, within ompR at 654.427 kb on + strand at 654.428 kb on - strand at 654.428 kb on - strand at 654.454 kb on - strand at 654.496 kb on + strand at 654.533 kb on + strand at 654.534 kb on - strand at 654.534 kb on - strand at 654.534 kb on - strand at 654.612 kb on - strand at 654.732 kb on + strand at 654.781 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_RB68 remove 651,848 - -0.4 651,884 + -0.1 651,885 - -0.4 651,930 - -1.0 651,982 - -0.1 652,064 + fba MCAODC_03240 0.16 -0.6 652,064 + fba MCAODC_03240 0.16 -0.6 652,084 + fba MCAODC_03240 0.18 +0.7 652,085 - fba MCAODC_03240 0.18 -0.0 652,085 - fba MCAODC_03240 0.18 +0.2 652,091 + fba MCAODC_03240 0.19 -1.0 652,095 + fba MCAODC_03240 0.19 -0.1 652,095 + fba MCAODC_03240 0.19 +0.2 652,097 + fba MCAODC_03240 0.19 -1.3 652,097 + fba MCAODC_03240 0.19 +1.2 652,165 + fba MCAODC_03240 0.27 +0.8 652,166 - fba MCAODC_03240 0.27 -0.2 652,257 + fba MCAODC_03240 0.38 +1.6 652,369 - fba MCAODC_03240 0.51 -1.0 652,369 - fba MCAODC_03240 0.51 -0.4 652,480 - fba MCAODC_03240 0.64 -0.7 652,549 + fba MCAODC_03240 0.72 +0.2 652,549 + fba MCAODC_03240 0.72 -2.2 652,550 - fba MCAODC_03240 0.72 +0.9 652,552 + fba MCAODC_03240 0.72 +0.9 652,552 + fba MCAODC_03240 0.72 -0.5 652,553 - fba MCAODC_03240 0.72 -0.2 652,553 - fba MCAODC_03240 0.72 +1.0 652,571 + fba MCAODC_03240 0.74 -0.4 652,626 + fba MCAODC_03240 0.81 -0.3 652,626 + fba MCAODC_03240 0.81 +1.5 652,692 + fba MCAODC_03240 0.89 +0.1 652,693 - fba MCAODC_03240 0.89 -0.7 652,798 + -1.3 652,822 + +1.3 652,822 + -1.9 652,823 - -1.8 652,823 - -1.0 652,823 - +0.3 652,965 + rbsK MCAODC_03245 0.18 +0.1 653,007 - rbsK MCAODC_03245 0.22 +0.5 653,007 - rbsK MCAODC_03245 0.22 +0.4 653,007 - rbsK MCAODC_03245 0.22 -0.2 653,007 - rbsK MCAODC_03245 0.22 -0.1 653,007 - rbsK MCAODC_03245 0.22 +1.1 653,063 - rbsK MCAODC_03245 0.28 -1.1 653,208 - rbsK MCAODC_03245 0.42 +0.9 653,211 + rbsK MCAODC_03245 0.42 +0.2 653,211 + rbsK MCAODC_03245 0.42 +0.5 653,211 + rbsK MCAODC_03245 0.42 -0.9 653,211 + rbsK MCAODC_03245 0.42 -0.0 653,211 + rbsK MCAODC_03245 0.42 +2.2 653,212 - rbsK MCAODC_03245 0.42 +0.8 653,212 - rbsK MCAODC_03245 0.42 +0.4 653,212 - rbsK MCAODC_03245 0.42 -3.2 653,212 - rbsK MCAODC_03245 0.42 +0.6 653,212 - rbsK MCAODC_03245 0.42 -0.3 653,212 - rbsK MCAODC_03245 0.42 -0.9 653,261 - rbsK MCAODC_03245 0.47 -2.3 653,291 - rbsK MCAODC_03245 0.50 +0.2 653,393 - rbsK MCAODC_03245 0.60 +0.2 653,456 - rbsK MCAODC_03245 0.67 -0.1 653,456 - rbsK MCAODC_03245 0.67 -0.5 653,456 - rbsK MCAODC_03245 0.67 +0.5 653,464 + rbsK MCAODC_03245 0.68 +0.5 653,464 + rbsK MCAODC_03245 0.68 -0.1 653,464 + rbsK MCAODC_03245 0.68 -0.4 653,464 + rbsK MCAODC_03245 0.68 -0.5 653,491 - rbsK MCAODC_03245 0.70 +1.2 653,590 - rbsK MCAODC_03245 0.80 +0.3 653,649 + rbsK MCAODC_03245 0.86 -0.3 653,649 + rbsK MCAODC_03245 0.86 +0.2 653,650 - rbsK MCAODC_03245 0.86 +0.8 653,650 - rbsK MCAODC_03245 0.86 +0.4 653,652 - rbsK MCAODC_03245 0.86 -0.4 653,652 - rbsK MCAODC_03245 0.86 +1.7 653,787 - -0.4 653,787 - -0.0 653,810 + +1.2 653,832 + +0.7 653,832 + +0.3 653,832 + +0.9 653,875 + ompR MCAODC_03250 0.13 +0.0 653,888 - ompR MCAODC_03250 0.15 +1.2 653,890 + ompR MCAODC_03250 0.15 -0.9 653,890 + ompR MCAODC_03250 0.15 +0.2 653,891 - ompR MCAODC_03250 0.15 +0.6 653,993 - ompR MCAODC_03250 0.29 +0.8 654,191 + ompR MCAODC_03250 0.57 +0.2 654,192 - ompR MCAODC_03250 0.57 -1.9 654,192 - ompR MCAODC_03250 0.57 +0.9 654,192 - ompR MCAODC_03250 0.57 -1.2 654,192 - ompR MCAODC_03250 0.57 +0.6 654,192 - ompR MCAODC_03250 0.57 -0.3 654,192 - ompR MCAODC_03250 0.57 -0.3 654,192 - ompR MCAODC_03250 0.57 -1.6 654,192 - ompR MCAODC_03250 0.57 +1.0 654,298 + ompR MCAODC_03250 0.72 +1.0 654,330 + ompR MCAODC_03250 0.77 -0.2 654,330 + ompR MCAODC_03250 0.77 -0.6 654,330 + ompR MCAODC_03250 0.77 +0.2 654,331 - ompR MCAODC_03250 0.77 +1.5 654,369 + ompR MCAODC_03250 0.82 +0.9 654,377 - ompR MCAODC_03250 0.84 +0.7 654,411 + ompR MCAODC_03250 0.88 +0.3 654,427 + -0.4 654,428 - +0.2 654,428 - +0.5 654,454 - -0.2 654,496 + -0.3 654,533 + +0.5 654,534 - +0.2 654,534 - +0.1 654,534 - +0.0 654,612 - +0.0 654,732 + -0.9 654,781 - -0.1
Or see this region's nucleotide sequence