Strain Fitness in Escherichia coli ECRC101 around MCAODC_03105

Experiment: WM_RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntproP and yjcZ are separated by 263 nucleotidesyjcZ and crfC overlap by 4 nucleotides MCAODC_03100: proP - glycine betaine/L-proline transporter ProP, at 627,612 to 629,114 proP MCAODC_03105: yjcZ - Uncharacterized protein YjcZ, at 629,378 to 630,256 yjcZ MCAODC_03110: crfC - clamp-binding protein CrfC, at 630,253 to 632,481 crfC Position (kb) 629 630 631Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 628.468 kb on + strand, within proPat 628.468 kb on + strand, within proPat 628.469 kb on - strand, within proPat 628.469 kb on - strand, within proPat 628.512 kb on - strand, within proPat 628.561 kb on - strand, within proPat 628.598 kb on + strand, within proPat 628.598 kb on + strand, within proPat 628.681 kb on + strand, within proPat 628.715 kb on + strand, within proPat 628.716 kb on - strand, within proPat 628.716 kb on - strand, within proPat 628.716 kb on - strand, within proPat 628.745 kb on + strand, within proPat 628.745 kb on + strand, within proPat 628.745 kb on + strand, within proPat 628.746 kb on - strand, within proPat 628.746 kb on - strand, within proPat 628.746 kb on - strand, within proPat 628.760 kb on - strand, within proPat 628.760 kb on - strand, within proPat 628.770 kb on + strand, within proPat 628.770 kb on + strand, within proPat 628.771 kb on - strand, within proPat 628.778 kb on + strand, within proPat 628.779 kb on - strand, within proPat 628.799 kb on + strand, within proPat 628.800 kb on - strand, within proPat 628.837 kb on + strand, within proPat 628.837 kb on + strand, within proPat 628.837 kb on + strand, within proPat 628.837 kb on + strand, within proPat 628.837 kb on + strand, within proPat 628.837 kb on + strand, within proPat 628.837 kb on + strand, within proPat 628.838 kb on - strand, within proPat 628.838 kb on - strand, within proPat 628.838 kb on - strand, within proPat 628.838 kb on - strand, within proPat 628.853 kb on + strand, within proPat 628.853 kb on + strand, within proPat 628.962 kb on + strand, within proPat 628.962 kb on + strand, within proPat 628.963 kb on - strand, within proPat 628.963 kb on - strand, within proPat 628.969 kb on + strandat 628.969 kb on + strandat 628.985 kb on - strandat 628.985 kb on - strandat 629.043 kb on - strandat 629.051 kb on + strandat 629.052 kb on - strandat 629.052 kb on - strandat 629.063 kb on + strandat 629.063 kb on + strandat 629.064 kb on - strandat 629.084 kb on + strandat 629.114 kb on + strandat 629.115 kb on - strandat 629.212 kb on - strandat 629.212 kb on - strandat 629.220 kb on + strandat 629.233 kb on + strandat 629.233 kb on + strandat 629.234 kb on - strandat 629.234 kb on - strandat 629.234 kb on - strandat 629.255 kb on + strandat 629.255 kb on + strandat 629.290 kb on + strandat 629.376 kb on - strandat 629.379 kb on + strandat 629.506 kb on + strand, within yjcZat 629.507 kb on - strand, within yjcZat 629.507 kb on - strand, within yjcZat 629.507 kb on - strand, within yjcZat 629.507 kb on - strand, within yjcZat 629.595 kb on + strand, within yjcZat 629.595 kb on + strand, within yjcZat 629.595 kb on + strand, within yjcZat 629.596 kb on - strand, within yjcZat 629.596 kb on - strand, within yjcZat 629.598 kb on + strand, within yjcZat 629.598 kb on + strand, within yjcZat 629.599 kb on - strand, within yjcZat 629.626 kb on + strand, within yjcZat 629.626 kb on + strand, within yjcZat 629.627 kb on - strand, within yjcZat 629.627 kb on - strand, within yjcZat 629.781 kb on + strand, within yjcZat 629.781 kb on + strand, within yjcZat 629.781 kb on + strand, within yjcZat 629.781 kb on + strand, within yjcZat 629.782 kb on - strand, within yjcZat 629.898 kb on + strand, within yjcZat 629.898 kb on + strand, within yjcZat 629.899 kb on - strand, within yjcZat 629.899 kb on - strand, within yjcZat 629.899 kb on - strand, within yjcZat 629.899 kb on - strand, within yjcZat 629.899 kb on - strand, within yjcZat 629.899 kb on - strand, within yjcZat 629.899 kb on - strand, within yjcZat 629.899 kb on - strand, within yjcZat 630.055 kb on + strand, within yjcZat 630.055 kb on + strand, within yjcZat 630.056 kb on - strand, within yjcZat 630.296 kb on - strandat 630.524 kb on + strand, within crfCat 630.525 kb on - strand, within crfCat 630.544 kb on + strand, within crfCat 630.566 kb on + strand, within crfCat 630.566 kb on + strand, within crfCat 630.655 kb on + strand, within crfCat 630.736 kb on + strand, within crfCat 630.736 kb on + strand, within crfCat 630.736 kb on + strand, within crfCat 630.736 kb on + strand, within crfCat 630.823 kb on - strand, within crfCat 630.823 kb on - strand, within crfCat 630.832 kb on + strand, within crfCat 630.876 kb on + strand, within crfCat 630.877 kb on - strand, within crfCat 630.910 kb on + strand, within crfCat 630.910 kb on + strand, within crfCat 630.910 kb on + strand, within crfCat 631.054 kb on - strand, within crfCat 631.090 kb on + strand, within crfCat 631.090 kb on + strand, within crfCat 631.090 kb on + strand, within crfCat 631.090 kb on + strand, within crfCat 631.091 kb on - strand, within crfCat 631.209 kb on + strand, within crfCat 631.210 kb on - strand, within crfCat 631.210 kb on - strand, within crfCat 631.232 kb on + strand, within crfCat 631.233 kb on - strand, within crfCat 631.233 kb on - strand, within crfCat 631.233 kb on - strand, within crfCat 631.233 kb on - strand, within crfCat 631.233 kb on - strand, within crfCat 631.233 kb on - strand, within crfCat 631.233 kb on - strand, within crfCat 631.233 kb on - strand, within crfC

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_RB68
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628,468 + proP MCAODC_03100 0.57 -0.5
628,468 + proP MCAODC_03100 0.57 -0.2
628,469 - proP MCAODC_03100 0.57 +0.7
628,469 - proP MCAODC_03100 0.57 -0.4
628,512 - proP MCAODC_03100 0.60 +0.0
628,561 - proP MCAODC_03100 0.63 +0.4
628,598 + proP MCAODC_03100 0.66 -0.3
628,598 + proP MCAODC_03100 0.66 -1.0
628,681 + proP MCAODC_03100 0.71 -0.7
628,715 + proP MCAODC_03100 0.73 +0.1
628,716 - proP MCAODC_03100 0.73 +0.0
628,716 - proP MCAODC_03100 0.73 -0.6
628,716 - proP MCAODC_03100 0.73 -0.4
628,745 + proP MCAODC_03100 0.75 +0.2
628,745 + proP MCAODC_03100 0.75 +0.2
628,745 + proP MCAODC_03100 0.75 -0.1
628,746 - proP MCAODC_03100 0.75 +0.3
628,746 - proP MCAODC_03100 0.75 -1.1
628,746 - proP MCAODC_03100 0.75 +0.9
628,760 - proP MCAODC_03100 0.76 +0.7
628,760 - proP MCAODC_03100 0.76 +0.6
628,770 + proP MCAODC_03100 0.77 -2.3
628,770 + proP MCAODC_03100 0.77 -0.0
628,771 - proP MCAODC_03100 0.77 -0.3
628,778 + proP MCAODC_03100 0.78 -0.1
628,779 - proP MCAODC_03100 0.78 -0.5
628,799 + proP MCAODC_03100 0.79 -0.6
628,800 - proP MCAODC_03100 0.79 -0.9
628,837 + proP MCAODC_03100 0.82 -0.8
628,837 + proP MCAODC_03100 0.82 +0.0
628,837 + proP MCAODC_03100 0.82 +0.6
628,837 + proP MCAODC_03100 0.82 -0.3
628,837 + proP MCAODC_03100 0.82 -0.6
628,837 + proP MCAODC_03100 0.82 +0.3
628,837 + proP MCAODC_03100 0.82 +1.1
628,838 - proP MCAODC_03100 0.82 -0.1
628,838 - proP MCAODC_03100 0.82 -0.5
628,838 - proP MCAODC_03100 0.82 +0.6
628,838 - proP MCAODC_03100 0.82 -0.4
628,853 + proP MCAODC_03100 0.83 -0.7
628,853 + proP MCAODC_03100 0.83 -0.3
628,962 + proP MCAODC_03100 0.90 +0.4
628,962 + proP MCAODC_03100 0.90 -0.0
628,963 - proP MCAODC_03100 0.90 +0.8
628,963 - proP MCAODC_03100 0.90 -0.3
628,969 + -0.5
628,969 + +1.2
628,985 - -0.5
628,985 - -0.7
629,043 - -0.5
629,051 + -1.1
629,052 - +0.7
629,052 - -1.5
629,063 + -0.3
629,063 + +1.1
629,064 - +0.3
629,084 + -0.5
629,114 + +0.4
629,115 - +0.7
629,212 - +0.3
629,212 - -1.9
629,220 + -1.7
629,233 + -0.8
629,233 + -0.5
629,234 - +0.2
629,234 - +0.8
629,234 - -1.3
629,255 + +1.1
629,255 + +0.2
629,290 + +0.6
629,376 - +0.6
629,379 + +2.7
629,506 + yjcZ MCAODC_03105 0.15 +1.5
629,507 - yjcZ MCAODC_03105 0.15 +0.2
629,507 - yjcZ MCAODC_03105 0.15 -3.0
629,507 - yjcZ MCAODC_03105 0.15 -0.7
629,507 - yjcZ MCAODC_03105 0.15 +1.4
629,595 + yjcZ MCAODC_03105 0.25 +0.4
629,595 + yjcZ MCAODC_03105 0.25 -0.3
629,595 + yjcZ MCAODC_03105 0.25 -0.5
629,596 - yjcZ MCAODC_03105 0.25 +0.5
629,596 - yjcZ MCAODC_03105 0.25 +2.2
629,598 + yjcZ MCAODC_03105 0.25 -0.0
629,598 + yjcZ MCAODC_03105 0.25 +0.4
629,599 - yjcZ MCAODC_03105 0.25 -0.7
629,626 + yjcZ MCAODC_03105 0.28 -1.2
629,626 + yjcZ MCAODC_03105 0.28 +0.2
629,627 - yjcZ MCAODC_03105 0.28 +0.0
629,627 - yjcZ MCAODC_03105 0.28 +0.5
629,781 + yjcZ MCAODC_03105 0.46 -3.9
629,781 + yjcZ MCAODC_03105 0.46 -0.4
629,781 + yjcZ MCAODC_03105 0.46 -1.4
629,781 + yjcZ MCAODC_03105 0.46 -0.1
629,782 - yjcZ MCAODC_03105 0.46 +0.2
629,898 + yjcZ MCAODC_03105 0.59 +0.2
629,898 + yjcZ MCAODC_03105 0.59 -0.5
629,899 - yjcZ MCAODC_03105 0.59 +0.4
629,899 - yjcZ MCAODC_03105 0.59 +0.5
629,899 - yjcZ MCAODC_03105 0.59 -0.5
629,899 - yjcZ MCAODC_03105 0.59 -1.8
629,899 - yjcZ MCAODC_03105 0.59 -0.2
629,899 - yjcZ MCAODC_03105 0.59 -0.6
629,899 - yjcZ MCAODC_03105 0.59 -1.1
629,899 - yjcZ MCAODC_03105 0.59 +0.2
630,055 + yjcZ MCAODC_03105 0.77 +0.3
630,055 + yjcZ MCAODC_03105 0.77 +0.1
630,056 - yjcZ MCAODC_03105 0.77 +0.1
630,296 - +0.6
630,524 + crfC MCAODC_03110 0.12 -0.8
630,525 - crfC MCAODC_03110 0.12 -0.9
630,544 + crfC MCAODC_03110 0.13 +1.6
630,566 + crfC MCAODC_03110 0.14 -0.0
630,566 + crfC MCAODC_03110 0.14 +0.4
630,655 + crfC MCAODC_03110 0.18 -0.8
630,736 + crfC MCAODC_03110 0.22 -0.7
630,736 + crfC MCAODC_03110 0.22 -1.8
630,736 + crfC MCAODC_03110 0.22 +0.2
630,736 + crfC MCAODC_03110 0.22 +0.5
630,823 - crfC MCAODC_03110 0.26 -1.2
630,823 - crfC MCAODC_03110 0.26 +0.6
630,832 + crfC MCAODC_03110 0.26 +0.6
630,876 + crfC MCAODC_03110 0.28 +0.5
630,877 - crfC MCAODC_03110 0.28 +0.1
630,910 + crfC MCAODC_03110 0.29 -0.2
630,910 + crfC MCAODC_03110 0.29 -1.6
630,910 + crfC MCAODC_03110 0.29 -0.0
631,054 - crfC MCAODC_03110 0.36 +0.3
631,090 + crfC MCAODC_03110 0.38 -0.5
631,090 + crfC MCAODC_03110 0.38 +0.1
631,090 + crfC MCAODC_03110 0.38 +0.3
631,090 + crfC MCAODC_03110 0.38 +0.7
631,091 - crfC MCAODC_03110 0.38 +0.6
631,209 + crfC MCAODC_03110 0.43 +0.6
631,210 - crfC MCAODC_03110 0.43 +0.2
631,210 - crfC MCAODC_03110 0.43 +0.0
631,232 + crfC MCAODC_03110 0.44 +0.2
631,233 - crfC MCAODC_03110 0.44 +0.2
631,233 - crfC MCAODC_03110 0.44 +1.0
631,233 - crfC MCAODC_03110 0.44 +0.0
631,233 - crfC MCAODC_03110 0.44 -0.8
631,233 - crfC MCAODC_03110 0.44 +0.3
631,233 - crfC MCAODC_03110 0.44 +2.8
631,233 - crfC MCAODC_03110 0.44 -0.2
631,233 - crfC MCAODC_03110 0.44 -1.3

Or see this region's nucleotide sequence