Experiment: WM_RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt blaEC and blc are separated by 87 nucleotides blc and sugE overlap by 4 nucleotides sugE and MCAODC_02890 are separated by 175 nucleotides MCAODC_02890 and MCAODC_02895 are separated by 110 nucleotides MCAODC_02895 and MCAODC_02900 are separated by 51 nucleotides
MCAODC_02875: blaEC - BlaEC family class C beta-lactamase, at 580,841 to 581,974
blaEC
MCAODC_02880: blc - lipocalin Blc, at 582,062 to 582,595
blc
MCAODC_02885: sugE - quaternary ammonium compound efflux SMR transporter SugE, at 582,592 to 582,909
sugE
MCAODC_02890: MCAODC_02890 - Entericidin B, at 583,085 to 583,231
_02890
MCAODC_02895: MCAODC_02895 - Entericidin A, at 583,342 to 583,467
_02895
MCAODC_02900: MCAODC_02900 - Elongation factor P, at 583,519 to 584,085
_02900
Position (kb) 582
583 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 581.073 kb on + strand, within blaEC at 581.074 kb on - strand, within blaEC at 581.119 kb on + strand, within blaEC at 581.162 kb on + strand, within blaEC at 581.163 kb on - strand, within blaEC at 581.163 kb on - strand, within blaEC at 581.205 kb on + strand, within blaEC at 581.205 kb on + strand, within blaEC at 581.205 kb on + strand, within blaEC at 581.206 kb on - strand, within blaEC at 581.206 kb on - strand, within blaEC at 581.206 kb on - strand, within blaEC at 581.206 kb on - strand, within blaEC at 581.208 kb on + strand, within blaEC at 581.208 kb on + strand, within blaEC at 581.208 kb on + strand, within blaEC at 581.209 kb on - strand, within blaEC at 581.209 kb on - strand, within blaEC at 581.209 kb on - strand, within blaEC at 581.209 kb on - strand, within blaEC at 581.209 kb on - strand, within blaEC at 581.209 kb on - strand, within blaEC at 581.222 kb on + strand, within blaEC at 581.222 kb on + strand, within blaEC at 581.222 kb on + strand, within blaEC at 581.222 kb on + strand, within blaEC at 581.223 kb on - strand, within blaEC at 581.336 kb on + strand, within blaEC at 581.336 kb on + strand, within blaEC at 581.336 kb on + strand, within blaEC at 581.337 kb on - strand, within blaEC at 581.446 kb on + strand, within blaEC at 581.446 kb on + strand, within blaEC at 581.447 kb on - strand, within blaEC at 581.447 kb on - strand, within blaEC at 581.447 kb on - strand, within blaEC at 581.456 kb on - strand, within blaEC at 581.456 kb on - strand, within blaEC at 581.535 kb on + strand, within blaEC at 581.536 kb on - strand, within blaEC at 581.536 kb on - strand, within blaEC at 581.536 kb on - strand, within blaEC at 581.550 kb on - strand, within blaEC at 581.680 kb on + strand, within blaEC at 581.680 kb on + strand, within blaEC at 581.680 kb on + strand, within blaEC at 581.681 kb on - strand, within blaEC at 581.681 kb on - strand, within blaEC at 581.684 kb on + strand, within blaEC at 581.684 kb on + strand, within blaEC at 581.684 kb on + strand, within blaEC at 581.811 kb on + strand, within blaEC at 581.811 kb on + strand, within blaEC at 581.812 kb on - strand, within blaEC at 581.830 kb on + strand, within blaEC at 581.858 kb on - strand, within blaEC at 581.858 kb on - strand, within blaEC at 581.861 kb on + strand at 581.861 kb on + strand at 581.861 kb on + strand at 581.861 kb on + strand at 581.861 kb on + strand at 581.861 kb on + strand at 581.862 kb on - strand at 581.862 kb on - strand at 581.862 kb on - strand at 581.862 kb on - strand at 581.862 kb on - strand at 581.862 kb on - strand at 581.862 kb on - strand at 581.908 kb on + strand at 581.967 kb on + strand at 581.968 kb on - strand at 581.968 kb on - strand at 582.030 kb on + strand at 582.030 kb on + strand at 582.030 kb on + strand at 582.037 kb on - strand at 582.037 kb on - strand at 582.050 kb on - strand at 582.050 kb on - strand at 582.062 kb on - strand at 582.062 kb on - strand at 582.062 kb on - strand at 582.151 kb on - strand, within blc at 582.157 kb on + strand, within blc at 582.158 kb on - strand, within blc at 582.170 kb on - strand, within blc at 582.176 kb on + strand, within blc at 582.177 kb on - strand, within blc at 582.191 kb on + strand, within blc at 582.192 kb on - strand, within blc at 582.251 kb on + strand, within blc at 582.251 kb on + strand, within blc at 582.251 kb on + strand, within blc at 582.252 kb on - strand, within blc at 582.252 kb on - strand, within blc at 582.252 kb on - strand, within blc at 582.287 kb on - strand, within blc at 582.290 kb on - strand, within blc at 582.290 kb on - strand, within blc at 582.296 kb on + strand, within blc at 582.296 kb on + strand, within blc at 582.296 kb on + strand, within blc at 582.296 kb on + strand, within blc at 582.296 kb on + strand, within blc at 582.297 kb on - strand, within blc at 582.297 kb on - strand, within blc at 582.341 kb on + strand, within blc at 582.342 kb on - strand, within blc at 582.342 kb on - strand, within blc at 582.398 kb on + strand, within blc at 582.399 kb on - strand, within blc at 582.407 kb on + strand, within blc at 582.407 kb on + strand, within blc at 582.407 kb on + strand, within blc at 582.407 kb on + strand, within blc at 582.407 kb on + strand, within blc at 582.407 kb on + strand, within blc at 582.409 kb on + strand, within blc at 582.409 kb on + strand, within blc at 582.410 kb on - strand, within blc at 582.410 kb on - strand, within blc at 582.410 kb on - strand, within blc at 582.415 kb on + strand, within blc at 582.471 kb on - strand, within blc at 582.480 kb on + strand, within blc at 582.568 kb on + strand at 582.568 kb on + strand at 582.593 kb on + strand at 582.593 kb on + strand at 582.594 kb on - strand at 582.594 kb on - strand at 582.618 kb on + strand at 582.619 kb on - strand at 582.629 kb on - strand, within sugE at 582.734 kb on + strand, within sugE at 582.735 kb on - strand, within sugE at 582.784 kb on - strand, within sugE at 582.807 kb on + strand, within sugE at 582.810 kb on + strand, within sugE at 582.811 kb on - strand, within sugE at 582.811 kb on - strand, within sugE at 582.832 kb on - strand, within sugE at 582.843 kb on + strand, within sugE at 582.844 kb on - strand, within sugE at 582.844 kb on - strand, within sugE at 582.845 kb on + strand, within sugE at 582.845 kb on + strand, within sugE at 582.846 kb on - strand, within sugE at 582.846 kb on - strand, within sugE at 582.856 kb on + strand, within sugE at 582.892 kb on + strand at 582.892 kb on + strand at 582.892 kb on + strand at 582.909 kb on + strand at 582.909 kb on + strand at 582.910 kb on - strand at 582.910 kb on - strand at 582.910 kb on - strand at 582.910 kb on - strand at 582.910 kb on - strand at 582.992 kb on - strand at 582.992 kb on - strand at 583.022 kb on - strand at 583.024 kb on + strand at 583.024 kb on + strand at 583.074 kb on - strand at 583.175 kb on + strand, within MCAODC_02890 at 583.175 kb on + strand, within MCAODC_02890 at 583.176 kb on - strand, within MCAODC_02890 at 583.176 kb on - strand, within MCAODC_02890 at 583.176 kb on - strand, within MCAODC_02890 at 583.176 kb on - strand, within MCAODC_02890 at 583.176 kb on - strand, within MCAODC_02890 at 583.176 kb on - strand, within MCAODC_02890 at 583.178 kb on + strand, within MCAODC_02890 at 583.178 kb on + strand, within MCAODC_02890 at 583.178 kb on + strand, within MCAODC_02890 at 583.179 kb on - strand, within MCAODC_02890 at 583.232 kb on - strand at 583.245 kb on + strand at 583.246 kb on - strand at 583.249 kb on + strand at 583.249 kb on + strand at 583.249 kb on + strand at 583.249 kb on + strand at 583.249 kb on + strand at 583.250 kb on - strand at 583.255 kb on + strand at 583.256 kb on - strand at 583.256 kb on - strand at 583.256 kb on - strand at 583.256 kb on - strand at 583.256 kb on - strand at 583.259 kb on + strand at 583.259 kb on + strand at 583.260 kb on - strand at 583.269 kb on + strand at 583.279 kb on + strand at 583.282 kb on + strand at 583.285 kb on + strand at 583.285 kb on + strand at 583.285 kb on + strand at 583.286 kb on - strand at 583.410 kb on + strand, within MCAODC_02895 at 583.480 kb on + strand at 583.480 kb on + strand at 583.481 kb on - strand at 583.520 kb on + strand at 583.520 kb on + strand at 583.520 kb on + strand at 583.521 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction WM_RB68 remove 581,073 + blaEC MCAODC_02875 0.20 +0.3 581,074 - blaEC MCAODC_02875 0.21 +1.2 581,119 + blaEC MCAODC_02875 0.25 +1.1 581,162 + blaEC MCAODC_02875 0.28 +0.4 581,163 - blaEC MCAODC_02875 0.28 -0.6 581,163 - blaEC MCAODC_02875 0.28 +1.9 581,205 + blaEC MCAODC_02875 0.32 +0.3 581,205 + blaEC MCAODC_02875 0.32 -0.5 581,205 + blaEC MCAODC_02875 0.32 +0.6 581,206 - blaEC MCAODC_02875 0.32 -0.2 581,206 - blaEC MCAODC_02875 0.32 +1.0 581,206 - blaEC MCAODC_02875 0.32 +0.7 581,206 - blaEC MCAODC_02875 0.32 +0.0 581,208 + blaEC MCAODC_02875 0.32 -0.1 581,208 + blaEC MCAODC_02875 0.32 +0.4 581,208 + blaEC MCAODC_02875 0.32 -0.0 581,209 - blaEC MCAODC_02875 0.32 +0.1 581,209 - blaEC MCAODC_02875 0.32 +0.5 581,209 - blaEC MCAODC_02875 0.32 -0.5 581,209 - blaEC MCAODC_02875 0.32 +0.3 581,209 - blaEC MCAODC_02875 0.32 +1.2 581,209 - blaEC MCAODC_02875 0.32 -1.1 581,222 + blaEC MCAODC_02875 0.34 +0.5 581,222 + blaEC MCAODC_02875 0.34 -0.1 581,222 + blaEC MCAODC_02875 0.34 -0.0 581,222 + blaEC MCAODC_02875 0.34 +0.6 581,223 - blaEC MCAODC_02875 0.34 +0.1 581,336 + blaEC MCAODC_02875 0.44 +0.6 581,336 + blaEC MCAODC_02875 0.44 -0.3 581,336 + blaEC MCAODC_02875 0.44 -0.3 581,337 - blaEC MCAODC_02875 0.44 -1.0 581,446 + blaEC MCAODC_02875 0.53 -0.2 581,446 + blaEC MCAODC_02875 0.53 -0.5 581,447 - blaEC MCAODC_02875 0.53 -2.4 581,447 - blaEC MCAODC_02875 0.53 +0.5 581,447 - blaEC MCAODC_02875 0.53 -0.1 581,456 - blaEC MCAODC_02875 0.54 -0.9 581,456 - blaEC MCAODC_02875 0.54 -0.1 581,535 + blaEC MCAODC_02875 0.61 -0.9 581,536 - blaEC MCAODC_02875 0.61 +1.3 581,536 - blaEC MCAODC_02875 0.61 +0.9 581,536 - blaEC MCAODC_02875 0.61 +0.3 581,550 - blaEC MCAODC_02875 0.63 +1.1 581,680 + blaEC MCAODC_02875 0.74 +0.5 581,680 + blaEC MCAODC_02875 0.74 -2.5 581,680 + blaEC MCAODC_02875 0.74 +0.1 581,681 - blaEC MCAODC_02875 0.74 +0.5 581,681 - blaEC MCAODC_02875 0.74 -0.4 581,684 + blaEC MCAODC_02875 0.74 +0.5 581,684 + blaEC MCAODC_02875 0.74 +0.3 581,684 + blaEC MCAODC_02875 0.74 -1.8 581,811 + blaEC MCAODC_02875 0.86 -0.9 581,811 + blaEC MCAODC_02875 0.86 -0.1 581,812 - blaEC MCAODC_02875 0.86 +0.2 581,830 + blaEC MCAODC_02875 0.87 +0.3 581,858 - blaEC MCAODC_02875 0.90 -1.9 581,858 - blaEC MCAODC_02875 0.90 +0.7 581,861 + +0.2 581,861 + -0.1 581,861 + -1.7 581,861 + -0.6 581,861 + -0.2 581,861 + -0.2 581,862 - +0.6 581,862 - -0.0 581,862 - -0.4 581,862 - -2.1 581,862 - +2.3 581,862 - -0.3 581,862 - +0.3 581,908 + -0.2 581,967 + -0.2 581,968 - +0.5 581,968 - -0.2 582,030 + +0.1 582,030 + -0.1 582,030 + -0.2 582,037 - -0.4 582,037 - -0.0 582,050 - +0.1 582,050 - +0.2 582,062 - +0.0 582,062 - -0.1 582,062 - -0.3 582,151 - blc MCAODC_02880 0.17 -1.5 582,157 + blc MCAODC_02880 0.18 -0.8 582,158 - blc MCAODC_02880 0.18 +1.3 582,170 - blc MCAODC_02880 0.20 +0.4 582,176 + blc MCAODC_02880 0.21 -1.9 582,177 - blc MCAODC_02880 0.22 +0.9 582,191 + blc MCAODC_02880 0.24 -0.0 582,192 - blc MCAODC_02880 0.24 -0.7 582,251 + blc MCAODC_02880 0.35 +1.2 582,251 + blc MCAODC_02880 0.35 -0.1 582,251 + blc MCAODC_02880 0.35 +0.1 582,252 - blc MCAODC_02880 0.36 -1.0 582,252 - blc MCAODC_02880 0.36 +0.6 582,252 - blc MCAODC_02880 0.36 -0.8 582,287 - blc MCAODC_02880 0.42 +1.1 582,290 - blc MCAODC_02880 0.43 -1.0 582,290 - blc MCAODC_02880 0.43 -0.5 582,296 + blc MCAODC_02880 0.44 -0.6 582,296 + blc MCAODC_02880 0.44 -1.0 582,296 + blc MCAODC_02880 0.44 -0.8 582,296 + blc MCAODC_02880 0.44 -0.4 582,296 + blc MCAODC_02880 0.44 +1.2 582,297 - blc MCAODC_02880 0.44 +0.1 582,297 - blc MCAODC_02880 0.44 -2.3 582,341 + blc MCAODC_02880 0.52 +0.4 582,342 - blc MCAODC_02880 0.52 +0.5 582,342 - blc MCAODC_02880 0.52 -1.1 582,398 + blc MCAODC_02880 0.63 -0.7 582,399 - blc MCAODC_02880 0.63 -0.0 582,407 + blc MCAODC_02880 0.65 +1.4 582,407 + blc MCAODC_02880 0.65 -0.9 582,407 + blc MCAODC_02880 0.65 +0.0 582,407 + blc MCAODC_02880 0.65 +1.5 582,407 + blc MCAODC_02880 0.65 +0.5 582,407 + blc MCAODC_02880 0.65 +0.0 582,409 + blc MCAODC_02880 0.65 -0.6 582,409 + blc MCAODC_02880 0.65 +0.6 582,410 - blc MCAODC_02880 0.65 +0.4 582,410 - blc MCAODC_02880 0.65 +0.0 582,410 - blc MCAODC_02880 0.65 -0.0 582,415 + blc MCAODC_02880 0.66 -0.8 582,471 - blc MCAODC_02880 0.77 +1.9 582,480 + blc MCAODC_02880 0.78 +0.7 582,568 + -0.3 582,568 + -0.5 582,593 + -0.7 582,593 + +1.2 582,594 - +1.5 582,594 - +0.2 582,618 + +0.6 582,619 - -0.3 582,629 - sugE MCAODC_02885 0.12 +0.1 582,734 + sugE MCAODC_02885 0.45 +0.9 582,735 - sugE MCAODC_02885 0.45 +0.3 582,784 - sugE MCAODC_02885 0.60 +0.0 582,807 + sugE MCAODC_02885 0.68 -0.4 582,810 + sugE MCAODC_02885 0.69 -1.5 582,811 - sugE MCAODC_02885 0.69 -0.3 582,811 - sugE MCAODC_02885 0.69 +0.3 582,832 - sugE MCAODC_02885 0.75 +0.3 582,843 + sugE MCAODC_02885 0.79 -0.8 582,844 - sugE MCAODC_02885 0.79 +0.2 582,844 - sugE MCAODC_02885 0.79 +0.1 582,845 + sugE MCAODC_02885 0.80 +0.2 582,845 + sugE MCAODC_02885 0.80 +0.1 582,846 - sugE MCAODC_02885 0.80 +0.2 582,846 - sugE MCAODC_02885 0.80 -1.3 582,856 + sugE MCAODC_02885 0.83 +0.6 582,892 + -0.8 582,892 + -0.0 582,892 + -0.7 582,909 + -1.0 582,909 + +1.2 582,910 - -0.4 582,910 - -0.1 582,910 - +0.5 582,910 - +0.6 582,910 - +0.3 582,992 - +0.1 582,992 - -0.5 583,022 - +0.2 583,024 + -0.7 583,024 + -1.1 583,074 - -0.6 583,175 + MCAODC_02890 0.61 +1.8 583,175 + MCAODC_02890 0.61 -3.2 583,176 - MCAODC_02890 0.62 -0.6 583,176 - MCAODC_02890 0.62 +0.2 583,176 - MCAODC_02890 0.62 +0.2 583,176 - MCAODC_02890 0.62 -0.2 583,176 - MCAODC_02890 0.62 -0.1 583,176 - MCAODC_02890 0.62 -0.1 583,178 + MCAODC_02890 0.63 -0.5 583,178 + MCAODC_02890 0.63 +0.4 583,178 + MCAODC_02890 0.63 +0.4 583,179 - MCAODC_02890 0.64 +0.7 583,232 - +0.1 583,245 + -0.3 583,246 - +0.5 583,249 + +0.4 583,249 + +1.3 583,249 + +0.3 583,249 + +0.3 583,249 + +0.8 583,250 - +1.3 583,255 + +0.2 583,256 - -0.5 583,256 - +0.6 583,256 - -0.1 583,256 - -0.3 583,256 - -1.9 583,259 + -1.4 583,259 + +0.0 583,260 - +0.1 583,269 + +0.4 583,279 + -1.8 583,282 + +0.1 583,285 + -0.7 583,285 + -0.4 583,285 + -0.3 583,286 - -0.9 583,410 + MCAODC_02895 0.54 +2.2 583,480 + +0.0 583,480 + +0.4 583,481 - -0.0 583,520 + +0.5 583,520 + +0.4 583,520 + -0.3 583,521 - +0.4
Or see this region's nucleotide sequence