Experiment: WM_RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ppa and chpB are separated by 79 nucleotides chpB and chpS are separated by 29 nucleotides chpS and ytfP are separated by 211 nucleotides ytfP and tamB are separated by 2 nucleotides
MCAODC_02490: ppa - inorganic diphosphatase, at 508,950 to 509,480
ppa
MCAODC_02495: chpB - type II toxin-antitoxin system ChpB family toxin, at 509,560 to 509,874
chpB
MCAODC_02500: chpS - type II toxin-antitoxin system antitoxin ChpS, at 509,904 to 510,155
chpS
MCAODC_02505: ytfP - Gamma-glutamylcyclotransferase family protein YtfP, at 510,367 to 510,708
ytfP
MCAODC_02510: tamB - autotransporter assembly complex protein TamB, at 510,711 to 514,490
tamB
Position (kb) 510
511 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 509.474 kb on + strand at 509.478 kb on + strand at 509.478 kb on + strand at 509.478 kb on + strand at 509.479 kb on - strand at 509.493 kb on + strand at 509.496 kb on + strand at 509.496 kb on + strand at 509.521 kb on - strand at 509.550 kb on + strand at 509.551 kb on - strand at 509.584 kb on + strand at 509.585 kb on - strand at 509.647 kb on + strand, within chpB at 509.647 kb on + strand, within chpB at 509.710 kb on + strand, within chpB at 509.710 kb on + strand, within chpB at 509.711 kb on - strand, within chpB at 509.711 kb on - strand, within chpB at 509.721 kb on + strand, within chpB at 509.732 kb on + strand, within chpB at 509.911 kb on - strand at 509.911 kb on - strand at 509.911 kb on - strand at 509.911 kb on - strand at 510.078 kb on + strand, within chpS at 510.083 kb on + strand, within chpS at 510.083 kb on + strand, within chpS at 510.083 kb on + strand, within chpS at 510.084 kb on - strand, within chpS at 510.116 kb on + strand, within chpS at 510.116 kb on + strand, within chpS at 510.116 kb on + strand, within chpS at 510.117 kb on - strand, within chpS at 510.117 kb on - strand, within chpS at 510.117 kb on - strand, within chpS at 510.117 kb on - strand, within chpS at 510.117 kb on - strand, within chpS at 510.146 kb on + strand at 510.147 kb on - strand at 510.149 kb on + strand at 510.150 kb on - strand at 510.150 kb on - strand at 510.150 kb on - strand at 510.150 kb on - strand at 510.150 kb on - strand at 510.197 kb on - strand at 510.253 kb on + strand at 510.254 kb on - strand at 510.256 kb on + strand at 510.256 kb on + strand at 510.256 kb on + strand at 510.256 kb on + strand at 510.257 kb on - strand at 510.257 kb on - strand at 510.257 kb on - strand at 510.257 kb on - strand at 510.257 kb on - strand at 510.302 kb on + strand at 510.356 kb on + strand at 510.362 kb on + strand at 510.363 kb on - strand at 510.363 kb on - strand at 510.363 kb on - strand at 510.368 kb on + strand at 510.368 kb on + strand at 510.368 kb on + strand at 510.369 kb on - strand at 510.369 kb on - strand at 510.369 kb on - strand at 510.372 kb on + strand at 510.372 kb on + strand at 510.373 kb on - strand at 510.373 kb on - strand at 510.373 kb on - strand at 510.403 kb on + strand, within ytfP at 510.404 kb on - strand, within ytfP at 510.409 kb on + strand, within ytfP at 510.410 kb on - strand, within ytfP at 510.432 kb on - strand, within ytfP at 510.437 kb on + strand, within ytfP at 510.437 kb on + strand, within ytfP at 510.438 kb on - strand, within ytfP at 510.542 kb on + strand, within ytfP at 510.543 kb on - strand, within ytfP at 510.543 kb on - strand, within ytfP at 510.543 kb on - strand, within ytfP at 510.601 kb on - strand, within ytfP at 510.602 kb on + strand, within ytfP at 510.602 kb on + strand, within ytfP at 510.602 kb on + strand, within ytfP at 510.603 kb on - strand, within ytfP at 510.603 kb on - strand, within ytfP at 510.603 kb on - strand, within ytfP at 510.611 kb on + strand, within ytfP at 510.612 kb on - strand, within ytfP at 510.612 kb on - strand, within ytfP at 510.612 kb on - strand, within ytfP at 510.638 kb on - strand, within ytfP at 510.683 kb on - strand at 510.712 kb on + strand at 510.713 kb on - strand at 510.713 kb on - strand at 510.713 kb on - strand at 510.728 kb on - strand at 510.774 kb on + strand at 510.774 kb on + strand at 510.774 kb on + strand at 510.774 kb on + strand at 510.775 kb on - strand at 510.775 kb on - strand at 510.779 kb on + strand at 510.780 kb on - strand at 510.780 kb on - strand at 510.798 kb on + strand at 510.799 kb on - strand at 510.799 kb on - strand at 510.799 kb on - strand at 510.814 kb on - strand at 510.814 kb on - strand at 510.815 kb on + strand at 510.815 kb on + strand at 510.825 kb on + strand at 510.825 kb on + strand at 510.825 kb on + strand at 510.825 kb on + strand at 510.826 kb on - strand at 510.826 kb on - strand at 510.828 kb on - strand at 510.838 kb on + strand at 510.861 kb on + strand at 510.861 kb on + strand at 510.861 kb on + strand at 510.861 kb on + strand at 510.861 kb on + strand at 510.861 kb on + strand at 510.862 kb on - strand at 510.862 kb on - strand at 510.862 kb on - strand at 510.862 kb on - strand at 510.862 kb on - strand at 510.866 kb on - strand at 510.880 kb on - strand at 510.950 kb on + strand at 510.950 kb on + strand at 510.954 kb on + strand at 510.954 kb on + strand at 510.955 kb on - strand at 511.055 kb on - strand at 511.055 kb on - strand at 511.146 kb on + strand, within tamB at 511.178 kb on + strand, within tamB at 511.190 kb on + strand, within tamB at 511.190 kb on + strand, within tamB at 511.195 kb on + strand, within tamB at 511.195 kb on + strand, within tamB at 511.224 kb on + strand, within tamB at 511.225 kb on - strand, within tamB at 511.225 kb on - strand, within tamB at 511.225 kb on - strand, within tamB at 511.225 kb on - strand, within tamB at 511.236 kb on - strand, within tamB at 511.258 kb on + strand, within tamB at 511.258 kb on + strand, within tamB at 511.259 kb on - strand, within tamB at 511.259 kb on - strand, within tamB at 511.331 kb on + strand, within tamB at 511.331 kb on + strand, within tamB at 511.412 kb on + strand, within tamB at 511.455 kb on - strand, within tamB at 511.556 kb on + strand, within tamB at 511.557 kb on - strand, within tamB at 511.572 kb on - strand, within tamB at 511.581 kb on + strand, within tamB at 511.582 kb on - strand, within tamB at 511.582 kb on - strand, within tamB at 511.582 kb on - strand, within tamB at 511.596 kb on + strand, within tamB at 511.596 kb on + strand, within tamB at 511.597 kb on - strand, within tamB at 511.597 kb on - strand, within tamB at 511.597 kb on - strand, within tamB at 511.638 kb on - strand, within tamB at 511.705 kb on + strand, within tamB at 511.706 kb on - strand, within tamB
Per-strain Table
Position Strand Gene LocusTag Fraction WM_RB68 remove 509,474 + -0.6 509,478 + -1.8 509,478 + +0.5 509,478 + +1.2 509,479 - +1.4 509,493 + -0.2 509,496 + +0.2 509,496 + +0.7 509,521 - -0.6 509,550 + +1.7 509,551 - -0.2 509,584 + +0.5 509,585 - +0.2 509,647 + chpB MCAODC_02495 0.28 -0.3 509,647 + chpB MCAODC_02495 0.28 -2.0 509,710 + chpB MCAODC_02495 0.48 +1.2 509,710 + chpB MCAODC_02495 0.48 -0.0 509,711 - chpB MCAODC_02495 0.48 -0.2 509,711 - chpB MCAODC_02495 0.48 +0.5 509,721 + chpB MCAODC_02495 0.51 +0.5 509,732 + chpB MCAODC_02495 0.55 +0.4 509,911 - -0.0 509,911 - +0.7 509,911 - +1.2 509,911 - -0.4 510,078 + chpS MCAODC_02500 0.69 +0.8 510,083 + chpS MCAODC_02500 0.71 +1.7 510,083 + chpS MCAODC_02500 0.71 +0.2 510,083 + chpS MCAODC_02500 0.71 -0.2 510,084 - chpS MCAODC_02500 0.71 +0.4 510,116 + chpS MCAODC_02500 0.84 +0.1 510,116 + chpS MCAODC_02500 0.84 -0.4 510,116 + chpS MCAODC_02500 0.84 -0.3 510,117 - chpS MCAODC_02500 0.85 +0.3 510,117 - chpS MCAODC_02500 0.85 -0.2 510,117 - chpS MCAODC_02500 0.85 +0.1 510,117 - chpS MCAODC_02500 0.85 -0.5 510,117 - chpS MCAODC_02500 0.85 +0.6 510,146 + -1.5 510,147 - -0.1 510,149 + -0.2 510,150 - +0.8 510,150 - -0.2 510,150 - -0.2 510,150 - -0.3 510,150 - -0.1 510,197 - +2.2 510,253 + +0.5 510,254 - -2.4 510,256 + -0.3 510,256 + -0.5 510,256 + -0.8 510,256 + +0.2 510,257 - +0.5 510,257 - -0.2 510,257 - +0.6 510,257 - +0.2 510,257 - +0.7 510,302 + +1.4 510,356 + +1.4 510,362 + +0.4 510,363 - -0.1 510,363 - +1.3 510,363 - +0.3 510,368 + -0.3 510,368 + -1.8 510,368 + -0.5 510,369 - -0.4 510,369 - +0.3 510,369 - -0.9 510,372 + -2.2 510,372 + -3.0 510,373 - +0.8 510,373 - +0.7 510,373 - -0.4 510,403 + ytfP MCAODC_02505 0.11 +0.3 510,404 - ytfP MCAODC_02505 0.11 -0.2 510,409 + ytfP MCAODC_02505 0.12 -0.9 510,410 - ytfP MCAODC_02505 0.13 +0.1 510,432 - ytfP MCAODC_02505 0.19 -0.1 510,437 + ytfP MCAODC_02505 0.20 -1.2 510,437 + ytfP MCAODC_02505 0.20 -0.0 510,438 - ytfP MCAODC_02505 0.21 +0.1 510,542 + ytfP MCAODC_02505 0.51 +0.7 510,543 - ytfP MCAODC_02505 0.51 +0.1 510,543 - ytfP MCAODC_02505 0.51 +0.2 510,543 - ytfP MCAODC_02505 0.51 +1.5 510,601 - ytfP MCAODC_02505 0.68 -0.3 510,602 + ytfP MCAODC_02505 0.69 -1.8 510,602 + ytfP MCAODC_02505 0.69 -0.8 510,602 + ytfP MCAODC_02505 0.69 +0.4 510,603 - ytfP MCAODC_02505 0.69 +0.0 510,603 - ytfP MCAODC_02505 0.69 +0.5 510,603 - ytfP MCAODC_02505 0.69 -3.0 510,611 + ytfP MCAODC_02505 0.71 -2.2 510,612 - ytfP MCAODC_02505 0.72 -0.5 510,612 - ytfP MCAODC_02505 0.72 +0.7 510,612 - ytfP MCAODC_02505 0.72 +0.7 510,638 - ytfP MCAODC_02505 0.79 +1.3 510,683 - -0.4 510,712 + -1.1 510,713 - -1.8 510,713 - -0.1 510,713 - -0.8 510,728 - -0.4 510,774 + -0.0 510,774 + -0.0 510,774 + -0.2 510,774 + -1.0 510,775 - +0.6 510,775 - +1.9 510,779 + -0.8 510,780 - +0.9 510,780 - +0.2 510,798 + +0.1 510,799 - +0.3 510,799 - +1.3 510,799 - -0.1 510,814 - -0.3 510,814 - +0.7 510,815 + +0.0 510,815 + +0.2 510,825 + -2.2 510,825 + +1.1 510,825 + +0.2 510,825 + +1.1 510,826 - -1.4 510,826 - +0.7 510,828 - +0.2 510,838 + +0.7 510,861 + +0.8 510,861 + -0.0 510,861 + -1.8 510,861 + +0.0 510,861 + -0.3 510,861 + -1.5 510,862 - +0.0 510,862 - +0.3 510,862 - -0.4 510,862 - -1.2 510,862 - -2.6 510,866 - +0.2 510,880 - -0.1 510,950 + -0.1 510,950 + -0.0 510,954 + +0.8 510,954 + -1.0 510,955 - -0.8 511,055 - +0.4 511,055 - +0.2 511,146 + tamB MCAODC_02510 0.12 +0.3 511,178 + tamB MCAODC_02510 0.12 -0.3 511,190 + tamB MCAODC_02510 0.13 +1.1 511,190 + tamB MCAODC_02510 0.13 -0.2 511,195 + tamB MCAODC_02510 0.13 +0.4 511,195 + tamB MCAODC_02510 0.13 +0.9 511,224 + tamB MCAODC_02510 0.14 -1.0 511,225 - tamB MCAODC_02510 0.14 +0.0 511,225 - tamB MCAODC_02510 0.14 +0.5 511,225 - tamB MCAODC_02510 0.14 -0.3 511,225 - tamB MCAODC_02510 0.14 -3.0 511,236 - tamB MCAODC_02510 0.14 -0.3 511,258 + tamB MCAODC_02510 0.14 +0.2 511,258 + tamB MCAODC_02510 0.14 -1.1 511,259 - tamB MCAODC_02510 0.14 -2.5 511,259 - tamB MCAODC_02510 0.14 -3.3 511,331 + tamB MCAODC_02510 0.16 -0.1 511,331 + tamB MCAODC_02510 0.16 +0.5 511,412 + tamB MCAODC_02510 0.19 -1.2 511,455 - tamB MCAODC_02510 0.20 +0.3 511,556 + tamB MCAODC_02510 0.22 -1.8 511,557 - tamB MCAODC_02510 0.22 -0.6 511,572 - tamB MCAODC_02510 0.23 +0.8 511,581 + tamB MCAODC_02510 0.23 +0.5 511,582 - tamB MCAODC_02510 0.23 +0.5 511,582 - tamB MCAODC_02510 0.23 +1.4 511,582 - tamB MCAODC_02510 0.23 +0.6 511,596 + tamB MCAODC_02510 0.23 +1.8 511,596 + tamB MCAODC_02510 0.23 +0.3 511,597 - tamB MCAODC_02510 0.23 -0.1 511,597 - tamB MCAODC_02510 0.23 -1.6 511,597 - tamB MCAODC_02510 0.23 +0.2 511,638 - tamB MCAODC_02510 0.25 -0.1 511,705 + tamB MCAODC_02510 0.26 +0.0 511,706 - tamB MCAODC_02510 0.26 +1.7
Or see this region's nucleotide sequence