Strain Fitness in Escherichia coli ECRC101 around MCAODC_02325

Experiment: WM_RB68

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntvalS and yjgN are separated by 54 nucleotidesyjgN and argA are separated by 192 nucleotidesargA and rraB are separated by 45 nucleotides MCAODC_02320: valS - valine--tRNA ligase, at 474,884 to 477,739 valS MCAODC_02325: yjgN - Inner membrane protein YjgN, at 477,794 to 478,990 yjgN MCAODC_02330: argA - GNAT family N-acetyltransferase, at 479,183 to 479,686 argA MCAODC_02335: rraB - ribonuclease E inhibitor RraB, at 479,732 to 480,148 rraB Position (kb) 477 478 479Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 477.737 kb on + strandat 477.851 kb on - strandat 477.907 kb on - strandat 477.938 kb on + strand, within yjgNat 477.939 kb on - strand, within yjgNat 478.012 kb on + strand, within yjgNat 478.013 kb on - strand, within yjgNat 478.021 kb on - strand, within yjgNat 478.385 kb on + strand, within yjgNat 478.398 kb on - strand, within yjgNat 478.457 kb on + strand, within yjgNat 478.462 kb on + strand, within yjgNat 478.487 kb on + strand, within yjgNat 478.488 kb on - strand, within yjgNat 478.505 kb on - strand, within yjgNat 478.737 kb on + strand, within yjgNat 479.028 kb on + strandat 479.079 kb on - strandat 479.125 kb on + strandat 479.183 kb on - strandat 479.279 kb on + strand, within argAat 479.279 kb on + strand, within argAat 479.279 kb on + strand, within argAat 479.280 kb on - strand, within argAat 479.296 kb on + strand, within argAat 479.345 kb on + strand, within argAat 479.345 kb on + strand, within argAat 479.345 kb on + strand, within argAat 479.346 kb on - strand, within argAat 479.346 kb on - strand, within argAat 479.346 kb on - strand, within argAat 479.346 kb on - strand, within argAat 479.346 kb on - strand, within argAat 479.366 kb on + strand, within argAat 479.366 kb on + strand, within argAat 479.366 kb on + strand, within argAat 479.381 kb on + strand, within argAat 479.421 kb on + strand, within argAat 479.422 kb on - strand, within argAat 479.476 kb on + strand, within argAat 479.511 kb on + strand, within argAat 479.608 kb on - strand, within argAat 479.608 kb on - strand, within argAat 479.620 kb on + strand, within argAat 479.620 kb on + strand, within argAat 479.674 kb on - strandat 479.729 kb on + strandat 479.729 kb on + strandat 479.730 kb on - strandat 479.730 kb on - strandat 479.808 kb on + strand, within rraBat 479.808 kb on + strand, within rraBat 479.809 kb on - strand, within rraBat 479.809 kb on - strand, within rraBat 479.809 kb on - strand, within rraBat 479.827 kb on - strand, within rraB

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_RB68
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477,737 + -0.1
477,851 - +0.1
477,907 - +0.7
477,938 + yjgN MCAODC_02325 0.12 +1.1
477,939 - yjgN MCAODC_02325 0.12 -1.2
478,012 + yjgN MCAODC_02325 0.18 +0.7
478,013 - yjgN MCAODC_02325 0.18 +0.7
478,021 - yjgN MCAODC_02325 0.19 +1.4
478,385 + yjgN MCAODC_02325 0.49 -2.1
478,398 - yjgN MCAODC_02325 0.50 -0.1
478,457 + yjgN MCAODC_02325 0.55 -0.8
478,462 + yjgN MCAODC_02325 0.56 -0.4
478,487 + yjgN MCAODC_02325 0.58 -0.5
478,488 - yjgN MCAODC_02325 0.58 -0.7
478,505 - yjgN MCAODC_02325 0.59 -0.3
478,737 + yjgN MCAODC_02325 0.79 +1.7
479,028 + +0.9
479,079 - +0.7
479,125 + +0.3
479,183 - +0.8
479,279 + argA MCAODC_02330 0.19 -0.2
479,279 + argA MCAODC_02330 0.19 +0.5
479,279 + argA MCAODC_02330 0.19 -2.9
479,280 - argA MCAODC_02330 0.19 +1.4
479,296 + argA MCAODC_02330 0.22 -0.2
479,345 + argA MCAODC_02330 0.32 -0.8
479,345 + argA MCAODC_02330 0.32 -0.1
479,345 + argA MCAODC_02330 0.32 +1.0
479,346 - argA MCAODC_02330 0.32 +0.3
479,346 - argA MCAODC_02330 0.32 +0.8
479,346 - argA MCAODC_02330 0.32 -1.8
479,346 - argA MCAODC_02330 0.32 -0.0
479,346 - argA MCAODC_02330 0.32 +0.3
479,366 + argA MCAODC_02330 0.36 +1.2
479,366 + argA MCAODC_02330 0.36 +0.7
479,366 + argA MCAODC_02330 0.36 +0.7
479,381 + argA MCAODC_02330 0.39 +0.3
479,421 + argA MCAODC_02330 0.47 -0.4
479,422 - argA MCAODC_02330 0.47 +0.3
479,476 + argA MCAODC_02330 0.58 -0.3
479,511 + argA MCAODC_02330 0.65 -0.1
479,608 - argA MCAODC_02330 0.84 +0.4
479,608 - argA MCAODC_02330 0.84 +0.7
479,620 + argA MCAODC_02330 0.87 +1.6
479,620 + argA MCAODC_02330 0.87 +0.1
479,674 - -0.6
479,729 + +0.0
479,729 + +0.4
479,730 - +1.4
479,730 - -1.3
479,808 + rraB MCAODC_02335 0.18 +2.7
479,808 + rraB MCAODC_02335 0.18 -0.8
479,809 - rraB MCAODC_02335 0.18 -1.5
479,809 - rraB MCAODC_02335 0.18 +0.2
479,809 - rraB MCAODC_02335 0.18 +0.3
479,827 - rraB MCAODC_02335 0.23 +0.2

Or see this region's nucleotide sequence