Experiment: WM_RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt lgoR and lgoT are separated by 214 nucleotides lgoT and tsr are separated by 48 nucleotides
MCAODC_01880: lgoR - putative HTH-type transcriptional regulator LgoR, at 361,431 to 362,345
lgoR
MCAODC_01885: lgoT - putative L-galactonate transporter, at 362,560 to 363,921
lgoT
MCAODC_01890: tsr - methyl-accepting chemotaxis protein, at 363,970 to 365,634
tsr
Position (kb) 362
363
364 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 361.560 kb on - strand, within lgoR at 361.572 kb on - strand, within lgoR at 361.572 kb on - strand, within lgoR at 361.603 kb on + strand, within lgoR at 361.623 kb on + strand, within lgoR at 361.623 kb on + strand, within lgoR at 361.628 kb on + strand, within lgoR at 361.628 kb on + strand, within lgoR at 361.629 kb on - strand, within lgoR at 361.629 kb on - strand, within lgoR at 361.629 kb on - strand, within lgoR at 361.670 kb on + strand, within lgoR at 361.671 kb on - strand, within lgoR at 361.727 kb on - strand, within lgoR at 361.815 kb on + strand, within lgoR at 361.838 kb on + strand, within lgoR at 361.838 kb on + strand, within lgoR at 361.839 kb on - strand, within lgoR at 362.183 kb on + strand, within lgoR at 362.184 kb on - strand, within lgoR at 362.196 kb on - strand, within lgoR at 362.216 kb on + strand, within lgoR at 362.216 kb on + strand, within lgoR at 362.216 kb on + strand, within lgoR at 362.217 kb on - strand, within lgoR at 362.217 kb on - strand, within lgoR at 362.343 kb on + strand at 362.372 kb on - strand at 362.399 kb on - strand at 362.424 kb on + strand at 362.424 kb on + strand at 362.424 kb on + strand at 362.425 kb on - strand at 362.425 kb on - strand at 362.522 kb on + strand at 362.523 kb on - strand at 362.546 kb on + strand at 362.622 kb on + strand at 362.723 kb on - strand, within lgoT at 362.868 kb on + strand, within lgoT at 362.949 kb on + strand, within lgoT at 362.950 kb on - strand, within lgoT at 363.014 kb on + strand, within lgoT at 363.015 kb on - strand, within lgoT at 363.101 kb on + strand, within lgoT at 363.102 kb on - strand, within lgoT at 363.102 kb on - strand, within lgoT at 363.157 kb on - strand, within lgoT at 363.157 kb on - strand, within lgoT at 363.160 kb on - strand, within lgoT at 363.199 kb on + strand, within lgoT at 363.199 kb on + strand, within lgoT at 363.199 kb on + strand, within lgoT at 363.199 kb on + strand, within lgoT at 363.199 kb on + strand, within lgoT at 363.200 kb on - strand, within lgoT at 363.200 kb on - strand, within lgoT at 363.200 kb on - strand, within lgoT at 363.201 kb on + strand, within lgoT at 363.201 kb on + strand, within lgoT at 363.201 kb on + strand, within lgoT at 363.201 kb on + strand, within lgoT at 363.201 kb on + strand, within lgoT at 363.201 kb on + strand, within lgoT at 363.202 kb on - strand, within lgoT at 363.202 kb on - strand, within lgoT at 363.202 kb on - strand, within lgoT at 363.202 kb on - strand, within lgoT at 363.202 kb on - strand, within lgoT at 363.202 kb on - strand, within lgoT at 363.202 kb on - strand, within lgoT at 363.202 kb on - strand, within lgoT at 363.202 kb on - strand, within lgoT at 363.227 kb on + strand, within lgoT at 363.228 kb on - strand, within lgoT at 363.228 kb on - strand, within lgoT at 363.253 kb on + strand, within lgoT at 363.253 kb on + strand, within lgoT at 363.254 kb on - strand, within lgoT at 363.267 kb on + strand, within lgoT at 363.325 kb on - strand, within lgoT at 363.370 kb on + strand, within lgoT at 363.385 kb on + strand, within lgoT at 363.385 kb on + strand, within lgoT at 363.421 kb on + strand, within lgoT at 363.421 kb on + strand, within lgoT at 363.421 kb on + strand, within lgoT at 363.421 kb on + strand, within lgoT at 363.421 kb on + strand, within lgoT at 363.421 kb on + strand, within lgoT at 363.421 kb on + strand, within lgoT at 363.422 kb on - strand, within lgoT at 363.422 kb on - strand, within lgoT at 363.422 kb on - strand, within lgoT at 363.423 kb on + strand, within lgoT at 363.435 kb on - strand, within lgoT at 363.503 kb on - strand, within lgoT at 363.565 kb on - strand, within lgoT at 363.565 kb on - strand, within lgoT at 363.565 kb on - strand, within lgoT at 363.602 kb on + strand, within lgoT at 363.606 kb on - strand, within lgoT at 363.663 kb on + strand, within lgoT at 363.799 kb on - strand at 363.799 kb on - strand at 363.799 kb on - strand at 363.807 kb on + strand at 363.808 kb on - strand at 363.808 kb on - strand at 363.808 kb on - strand at 363.808 kb on - strand at 363.874 kb on + strand at 363.874 kb on + strand at 363.874 kb on + strand at 363.875 kb on - strand at 363.875 kb on - strand at 363.875 kb on - strand at 363.919 kb on + strand at 363.920 kb on - strand at 363.920 kb on - strand at 363.971 kb on + strand at 363.971 kb on + strand at 363.997 kb on - strand at 364.227 kb on + strand, within tsr at 364.258 kb on + strand, within tsr at 364.258 kb on + strand, within tsr at 364.259 kb on - strand, within tsr at 364.269 kb on + strand, within tsr at 364.270 kb on - strand, within tsr at 364.584 kb on + strand, within tsr at 364.600 kb on - strand, within tsr at 364.642 kb on + strand, within tsr at 364.802 kb on + strand, within tsr at 364.802 kb on + strand, within tsr at 364.802 kb on + strand, within tsr at 364.802 kb on + strand, within tsr at 364.802 kb on + strand, within tsr at 364.803 kb on - strand, within tsr at 364.803 kb on - strand, within tsr at 364.803 kb on - strand, within tsr at 364.803 kb on - strand, within tsr at 364.803 kb on - strand, within tsr at 364.803 kb on - strand, within tsr at 364.803 kb on - strand, within tsr at 364.803 kb on - strand, within tsr at 364.840 kb on - strand, within tsr at 364.861 kb on - strand, within tsr
Per-strain Table
Position Strand Gene LocusTag Fraction WM_RB68 remove 361,560 - lgoR MCAODC_01880 0.14 -0.0 361,572 - lgoR MCAODC_01880 0.15 +0.7 361,572 - lgoR MCAODC_01880 0.15 +0.7 361,603 + lgoR MCAODC_01880 0.19 -0.2 361,623 + lgoR MCAODC_01880 0.21 -0.5 361,623 + lgoR MCAODC_01880 0.21 +0.5 361,628 + lgoR MCAODC_01880 0.22 -1.3 361,628 + lgoR MCAODC_01880 0.22 +0.3 361,629 - lgoR MCAODC_01880 0.22 -1.2 361,629 - lgoR MCAODC_01880 0.22 +0.2 361,629 - lgoR MCAODC_01880 0.22 -3.5 361,670 + lgoR MCAODC_01880 0.26 +0.8 361,671 - lgoR MCAODC_01880 0.26 +0.7 361,727 - lgoR MCAODC_01880 0.32 -1.4 361,815 + lgoR MCAODC_01880 0.42 -0.3 361,838 + lgoR MCAODC_01880 0.44 +0.3 361,838 + lgoR MCAODC_01880 0.44 -0.6 361,839 - lgoR MCAODC_01880 0.45 +1.3 362,183 + lgoR MCAODC_01880 0.82 +1.2 362,184 - lgoR MCAODC_01880 0.82 +0.8 362,196 - lgoR MCAODC_01880 0.84 -0.1 362,216 + lgoR MCAODC_01880 0.86 -0.8 362,216 + lgoR MCAODC_01880 0.86 +0.2 362,216 + lgoR MCAODC_01880 0.86 +0.3 362,217 - lgoR MCAODC_01880 0.86 +0.5 362,217 - lgoR MCAODC_01880 0.86 +0.2 362,343 + +0.6 362,372 - +0.1 362,399 - +0.2 362,424 + -2.8 362,424 + -0.4 362,424 + -0.3 362,425 - +0.7 362,425 - -1.6 362,522 + -1.6 362,523 - -0.2 362,546 + -0.4 362,622 + -0.4 362,723 - lgoT MCAODC_01885 0.12 +0.2 362,868 + lgoT MCAODC_01885 0.23 +0.0 362,949 + lgoT MCAODC_01885 0.29 +1.1 362,950 - lgoT MCAODC_01885 0.29 +0.4 363,014 + lgoT MCAODC_01885 0.33 +1.1 363,015 - lgoT MCAODC_01885 0.33 -0.7 363,101 + lgoT MCAODC_01885 0.40 +0.2 363,102 - lgoT MCAODC_01885 0.40 -0.6 363,102 - lgoT MCAODC_01885 0.40 -0.1 363,157 - lgoT MCAODC_01885 0.44 -0.3 363,157 - lgoT MCAODC_01885 0.44 +2.0 363,160 - lgoT MCAODC_01885 0.44 -1.1 363,199 + lgoT MCAODC_01885 0.47 -0.0 363,199 + lgoT MCAODC_01885 0.47 -0.1 363,199 + lgoT MCAODC_01885 0.47 +0.8 363,199 + lgoT MCAODC_01885 0.47 +0.6 363,199 + lgoT MCAODC_01885 0.47 -1.4 363,200 - lgoT MCAODC_01885 0.47 +0.1 363,200 - lgoT MCAODC_01885 0.47 -0.8 363,200 - lgoT MCAODC_01885 0.47 -0.0 363,201 + lgoT MCAODC_01885 0.47 +0.8 363,201 + lgoT MCAODC_01885 0.47 +0.4 363,201 + lgoT MCAODC_01885 0.47 +0.1 363,201 + lgoT MCAODC_01885 0.47 +0.6 363,201 + lgoT MCAODC_01885 0.47 +1.8 363,201 + lgoT MCAODC_01885 0.47 +0.6 363,202 - lgoT MCAODC_01885 0.47 +0.5 363,202 - lgoT MCAODC_01885 0.47 -0.6 363,202 - lgoT MCAODC_01885 0.47 -1.1 363,202 - lgoT MCAODC_01885 0.47 -1.4 363,202 - lgoT MCAODC_01885 0.47 +0.6 363,202 - lgoT MCAODC_01885 0.47 -0.2 363,202 - lgoT MCAODC_01885 0.47 +2.4 363,202 - lgoT MCAODC_01885 0.47 +0.2 363,202 - lgoT MCAODC_01885 0.47 +1.1 363,227 + lgoT MCAODC_01885 0.49 -2.5 363,228 - lgoT MCAODC_01885 0.49 -0.2 363,228 - lgoT MCAODC_01885 0.49 +0.6 363,253 + lgoT MCAODC_01885 0.51 +0.2 363,253 + lgoT MCAODC_01885 0.51 -0.3 363,254 - lgoT MCAODC_01885 0.51 +0.9 363,267 + lgoT MCAODC_01885 0.52 -1.4 363,325 - lgoT MCAODC_01885 0.56 +1.6 363,370 + lgoT MCAODC_01885 0.59 +0.7 363,385 + lgoT MCAODC_01885 0.61 +0.1 363,385 + lgoT MCAODC_01885 0.61 +0.3 363,421 + lgoT MCAODC_01885 0.63 +0.3 363,421 + lgoT MCAODC_01885 0.63 +0.5 363,421 + lgoT MCAODC_01885 0.63 -0.0 363,421 + lgoT MCAODC_01885 0.63 +0.3 363,421 + lgoT MCAODC_01885 0.63 -1.0 363,421 + lgoT MCAODC_01885 0.63 +0.5 363,421 + lgoT MCAODC_01885 0.63 +0.1 363,422 - lgoT MCAODC_01885 0.63 -0.1 363,422 - lgoT MCAODC_01885 0.63 -0.3 363,422 - lgoT MCAODC_01885 0.63 +0.1 363,423 + lgoT MCAODC_01885 0.63 +0.5 363,435 - lgoT MCAODC_01885 0.64 -1.9 363,503 - lgoT MCAODC_01885 0.69 +0.1 363,565 - lgoT MCAODC_01885 0.74 +0.1 363,565 - lgoT MCAODC_01885 0.74 +0.6 363,565 - lgoT MCAODC_01885 0.74 -1.2 363,602 + lgoT MCAODC_01885 0.77 +0.3 363,606 - lgoT MCAODC_01885 0.77 -0.2 363,663 + lgoT MCAODC_01885 0.81 -0.2 363,799 - -0.3 363,799 - +0.7 363,799 - -0.2 363,807 + -0.9 363,808 - -0.0 363,808 - +0.8 363,808 - -0.5 363,808 - +0.5 363,874 + +0.1 363,874 + -0.0 363,874 + +0.1 363,875 - +0.9 363,875 - +0.1 363,875 - +0.6 363,919 + -0.1 363,920 - -0.4 363,920 - -1.9 363,971 + -0.6 363,971 + +0.3 363,997 - +0.8 364,227 + tsr MCAODC_01890 0.15 +1.2 364,258 + tsr MCAODC_01890 0.17 +2.1 364,258 + tsr MCAODC_01890 0.17 -1.0 364,259 - tsr MCAODC_01890 0.17 +1.2 364,269 + tsr MCAODC_01890 0.18 +0.0 364,270 - tsr MCAODC_01890 0.18 +0.1 364,584 + tsr MCAODC_01890 0.37 +0.3 364,600 - tsr MCAODC_01890 0.38 -0.4 364,642 + tsr MCAODC_01890 0.40 +1.1 364,802 + tsr MCAODC_01890 0.50 +0.3 364,802 + tsr MCAODC_01890 0.50 -0.7 364,802 + tsr MCAODC_01890 0.50 +0.1 364,802 + tsr MCAODC_01890 0.50 -2.0 364,802 + tsr MCAODC_01890 0.50 +0.3 364,803 - tsr MCAODC_01890 0.50 +0.9 364,803 - tsr MCAODC_01890 0.50 +0.8 364,803 - tsr MCAODC_01890 0.50 +0.5 364,803 - tsr MCAODC_01890 0.50 -0.2 364,803 - tsr MCAODC_01890 0.50 +0.7 364,803 - tsr MCAODC_01890 0.50 +0.4 364,803 - tsr MCAODC_01890 0.50 +0.6 364,803 - tsr MCAODC_01890 0.50 -0.2 364,840 - tsr MCAODC_01890 0.52 +0.4 364,861 - tsr MCAODC_01890 0.54 +0.6
Or see this region's nucleotide sequence