Experiment: WM_RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjjX and trpR are separated by 146 nucleotides trpR and sltY are separated by 119 nucleotides sltY and ettA are separated by 210 nucleotides
MCAODC_01675: yjjX - inosine/xanthosine triphosphatase, at 325,097 to 325,609
yjjX
MCAODC_01680: trpR - trp operon repressor, at 325,756 to 326,052
trpR
MCAODC_01685: sltY - murein transglycosylase, at 326,172 to 328,109
sltY
MCAODC_01690: ettA - energy-dependent translational throttle protein EttA, at 328,320 to 329,987
ettA
Position (kb) 326
327
328
329 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 325.438 kb on - strand, within yjjX at 325.501 kb on + strand, within yjjX at 325.557 kb on - strand, within yjjX at 325.557 kb on - strand, within yjjX at 325.604 kb on + strand at 325.605 kb on - strand at 325.605 kb on - strand at 325.607 kb on + strand at 325.608 kb on - strand at 325.608 kb on - strand at 325.636 kb on + strand at 325.655 kb on - strand at 325.669 kb on + strand at 325.676 kb on - strand at 325.824 kb on + strand, within trpR at 325.824 kb on + strand, within trpR at 325.825 kb on - strand, within trpR at 325.836 kb on + strand, within trpR at 325.915 kb on - strand, within trpR at 325.967 kb on - strand, within trpR at 325.975 kb on + strand, within trpR at 325.976 kb on - strand, within trpR at 326.004 kb on + strand, within trpR at 326.023 kb on + strand at 326.063 kb on + strand at 326.082 kb on + strand at 326.082 kb on + strand at 326.083 kb on - strand at 326.083 kb on - strand at 326.083 kb on - strand at 326.085 kb on + strand at 326.085 kb on + strand at 326.085 kb on + strand at 326.085 kb on + strand at 326.085 kb on + strand at 326.085 kb on + strand at 326.085 kb on + strand at 326.086 kb on - strand at 326.086 kb on - strand at 326.086 kb on - strand at 326.086 kb on - strand at 326.086 kb on - strand at 326.155 kb on + strand at 326.155 kb on + strand at 326.156 kb on - strand at 326.160 kb on + strand at 326.160 kb on + strand at 326.161 kb on - strand at 326.161 kb on - strand at 326.236 kb on + strand at 326.236 kb on + strand at 326.239 kb on + strand at 326.240 kb on - strand at 326.249 kb on - strand at 326.269 kb on + strand at 326.269 kb on + strand at 326.270 kb on - strand at 326.294 kb on + strand at 326.294 kb on + strand at 326.295 kb on - strand at 326.372 kb on + strand, within sltY at 326.372 kb on + strand, within sltY at 326.373 kb on - strand, within sltY at 326.373 kb on - strand, within sltY at 326.374 kb on + strand, within sltY at 326.375 kb on - strand, within sltY at 326.394 kb on - strand, within sltY at 326.402 kb on + strand, within sltY at 326.416 kb on + strand, within sltY at 326.422 kb on + strand, within sltY at 326.422 kb on + strand, within sltY at 326.422 kb on + strand, within sltY at 326.422 kb on + strand, within sltY at 326.423 kb on - strand, within sltY at 326.423 kb on - strand, within sltY at 326.432 kb on - strand, within sltY at 326.450 kb on + strand, within sltY at 326.486 kb on + strand, within sltY at 326.486 kb on + strand, within sltY at 326.486 kb on + strand, within sltY at 326.486 kb on + strand, within sltY at 326.486 kb on + strand, within sltY at 326.487 kb on - strand, within sltY at 326.487 kb on - strand, within sltY at 326.498 kb on + strand, within sltY at 326.498 kb on + strand, within sltY at 326.499 kb on - strand, within sltY at 326.499 kb on - strand, within sltY at 326.499 kb on - strand, within sltY at 326.499 kb on - strand, within sltY at 326.517 kb on - strand, within sltY at 326.538 kb on - strand, within sltY at 326.538 kb on - strand, within sltY at 326.620 kb on + strand, within sltY at 326.620 kb on + strand, within sltY at 326.650 kb on + strand, within sltY at 326.651 kb on - strand, within sltY at 326.651 kb on - strand, within sltY at 326.671 kb on + strand, within sltY at 326.671 kb on + strand, within sltY at 326.672 kb on - strand, within sltY at 326.736 kb on - strand, within sltY at 326.736 kb on - strand, within sltY at 326.852 kb on - strand, within sltY at 326.938 kb on + strand, within sltY at 326.938 kb on + strand, within sltY at 327.062 kb on - strand, within sltY at 327.093 kb on - strand, within sltY at 327.167 kb on + strand, within sltY at 327.168 kb on - strand, within sltY at 327.176 kb on + strand, within sltY at 327.176 kb on + strand, within sltY at 327.176 kb on + strand, within sltY at 327.177 kb on - strand, within sltY at 327.191 kb on + strand, within sltY at 327.192 kb on - strand, within sltY at 327.192 kb on - strand, within sltY at 327.290 kb on + strand, within sltY at 327.290 kb on + strand, within sltY at 327.291 kb on - strand, within sltY at 327.390 kb on - strand, within sltY at 327.410 kb on + strand, within sltY at 327.411 kb on - strand, within sltY at 327.411 kb on - strand, within sltY at 327.471 kb on - strand, within sltY at 327.510 kb on + strand, within sltY at 327.524 kb on + strand, within sltY at 327.555 kb on + strand, within sltY at 327.555 kb on + strand, within sltY at 327.556 kb on - strand, within sltY at 327.556 kb on - strand, within sltY at 327.559 kb on + strand, within sltY at 327.560 kb on - strand, within sltY at 327.560 kb on - strand, within sltY at 327.578 kb on + strand, within sltY at 327.579 kb on - strand, within sltY at 327.579 kb on - strand, within sltY at 327.579 kb on - strand, within sltY at 327.599 kb on + strand, within sltY at 327.599 kb on + strand, within sltY at 327.599 kb on + strand, within sltY at 327.604 kb on - strand, within sltY at 327.604 kb on - strand, within sltY at 327.700 kb on + strand, within sltY at 327.700 kb on + strand, within sltY at 327.703 kb on + strand, within sltY at 327.703 kb on + strand, within sltY at 327.703 kb on + strand, within sltY at 327.704 kb on - strand, within sltY at 327.704 kb on - strand, within sltY at 327.704 kb on - strand, within sltY at 327.704 kb on - strand, within sltY at 327.704 kb on - strand, within sltY at 327.706 kb on + strand, within sltY at 327.706 kb on + strand, within sltY at 327.706 kb on + strand, within sltY at 327.706 kb on + strand, within sltY at 327.706 kb on + strand, within sltY at 327.706 kb on + strand, within sltY at 327.706 kb on + strand, within sltY at 327.707 kb on - strand, within sltY at 327.707 kb on - strand, within sltY at 327.707 kb on - strand, within sltY at 327.707 kb on - strand, within sltY at 327.707 kb on - strand, within sltY at 327.707 kb on - strand, within sltY at 327.707 kb on - strand, within sltY at 327.707 kb on - strand, within sltY at 327.710 kb on + strand, within sltY at 327.710 kb on + strand, within sltY at 327.710 kb on + strand, within sltY at 327.710 kb on + strand, within sltY at 327.710 kb on + strand, within sltY at 327.710 kb on + strand, within sltY at 327.710 kb on + strand, within sltY at 327.711 kb on - strand, within sltY at 327.851 kb on + strand, within sltY at 327.852 kb on - strand, within sltY at 327.917 kb on - strand at 328.089 kb on - strand at 328.122 kb on + strand at 328.128 kb on + strand at 328.129 kb on - strand at 328.132 kb on + strand at 328.132 kb on + strand at 328.132 kb on + strand at 328.133 kb on - strand at 328.133 kb on - strand at 328.133 kb on - strand at 328.133 kb on - strand at 328.161 kb on - strand at 328.166 kb on + strand at 328.166 kb on + strand at 328.166 kb on + strand at 328.167 kb on - strand at 328.167 kb on - strand at 328.167 kb on - strand at 328.190 kb on - strand at 328.219 kb on + strand at 328.303 kb on + strand at 328.304 kb on - strand at 328.335 kb on + strand at 328.337 kb on + strand at 328.337 kb on + strand at 328.338 kb on - strand at 328.338 kb on - strand at 328.338 kb on - strand at 328.379 kb on + strand at 328.451 kb on + strand at 328.472 kb on + strand at 328.472 kb on + strand at 328.472 kb on + strand at 328.537 kb on - strand, within ettA at 328.577 kb on - strand, within ettA at 328.577 kb on - strand, within ettA at 328.641 kb on + strand, within ettA at 328.642 kb on - strand, within ettA at 328.642 kb on - strand, within ettA at 328.734 kb on - strand, within ettA at 328.744 kb on + strand, within ettA at 328.744 kb on + strand, within ettA at 328.744 kb on + strand, within ettA at 328.744 kb on + strand, within ettA at 328.771 kb on + strand, within ettA at 328.771 kb on + strand, within ettA at 328.771 kb on + strand, within ettA at 328.771 kb on + strand, within ettA at 328.965 kb on - strand, within ettA at 328.977 kb on + strand, within ettA at 328.977 kb on + strand, within ettA at 328.978 kb on - strand, within ettA at 328.978 kb on - strand, within ettA at 329.045 kb on + strand, within ettA at 329.046 kb on - strand, within ettA at 329.046 kb on - strand, within ettA at 329.049 kb on + strand, within ettA at 329.050 kb on - strand, within ettA at 329.050 kb on - strand, within ettA at 329.050 kb on - strand, within ettA at 329.050 kb on - strand, within ettA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_RB68 remove 325,438 - yjjX MCAODC_01675 0.66 -0.3 325,501 + yjjX MCAODC_01675 0.79 -0.4 325,557 - yjjX MCAODC_01675 0.90 +0.3 325,557 - yjjX MCAODC_01675 0.90 -0.4 325,604 + -0.0 325,605 - +0.6 325,605 - +0.1 325,607 + +0.2 325,608 - +0.4 325,608 - -1.8 325,636 + +1.4 325,655 - -0.8 325,669 + +0.2 325,676 - +0.5 325,824 + trpR MCAODC_01680 0.23 -0.2 325,824 + trpR MCAODC_01680 0.23 -0.7 325,825 - trpR MCAODC_01680 0.23 -0.5 325,836 + trpR MCAODC_01680 0.27 -1.0 325,915 - trpR MCAODC_01680 0.54 +0.1 325,967 - trpR MCAODC_01680 0.71 +1.2 325,975 + trpR MCAODC_01680 0.74 +0.7 325,976 - trpR MCAODC_01680 0.74 +1.3 326,004 + trpR MCAODC_01680 0.84 -0.1 326,023 + -0.3 326,063 + -0.2 326,082 + +0.4 326,082 + +0.1 326,083 - -0.3 326,083 - +0.9 326,083 - +0.9 326,085 + -0.0 326,085 + -0.4 326,085 + +1.2 326,085 + -0.1 326,085 + +0.3 326,085 + +0.8 326,085 + +0.6 326,086 - +0.4 326,086 - +0.6 326,086 - +0.2 326,086 - +0.3 326,086 - +0.9 326,155 + -0.4 326,155 + +0.4 326,156 - -0.3 326,160 + -0.6 326,160 + -2.3 326,161 - -0.9 326,161 - -0.7 326,236 + +0.3 326,236 + +0.6 326,239 + -0.0 326,240 - +0.4 326,249 - -0.6 326,269 + -0.1 326,269 + -1.4 326,270 - +0.3 326,294 + +1.1 326,294 + -0.3 326,295 - -0.6 326,372 + sltY MCAODC_01685 0.10 -1.5 326,372 + sltY MCAODC_01685 0.10 -1.3 326,373 - sltY MCAODC_01685 0.10 -1.4 326,373 - sltY MCAODC_01685 0.10 +0.6 326,374 + sltY MCAODC_01685 0.10 +0.3 326,375 - sltY MCAODC_01685 0.10 -0.6 326,394 - sltY MCAODC_01685 0.11 +0.3 326,402 + sltY MCAODC_01685 0.12 +0.9 326,416 + sltY MCAODC_01685 0.13 +0.5 326,422 + sltY MCAODC_01685 0.13 +1.1 326,422 + sltY MCAODC_01685 0.13 -0.2 326,422 + sltY MCAODC_01685 0.13 +0.2 326,422 + sltY MCAODC_01685 0.13 +0.7 326,423 - sltY MCAODC_01685 0.13 -2.2 326,423 - sltY MCAODC_01685 0.13 +1.4 326,432 - sltY MCAODC_01685 0.13 -0.0 326,450 + sltY MCAODC_01685 0.14 +1.2 326,486 + sltY MCAODC_01685 0.16 +0.8 326,486 + sltY MCAODC_01685 0.16 -1.8 326,486 + sltY MCAODC_01685 0.16 -0.0 326,486 + sltY MCAODC_01685 0.16 +0.7 326,486 + sltY MCAODC_01685 0.16 +0.1 326,487 - sltY MCAODC_01685 0.16 +0.8 326,487 - sltY MCAODC_01685 0.16 +0.5 326,498 + sltY MCAODC_01685 0.17 -0.3 326,498 + sltY MCAODC_01685 0.17 +1.3 326,499 - sltY MCAODC_01685 0.17 -0.9 326,499 - sltY MCAODC_01685 0.17 -0.3 326,499 - sltY MCAODC_01685 0.17 -0.7 326,499 - sltY MCAODC_01685 0.17 +0.6 326,517 - sltY MCAODC_01685 0.18 -0.7 326,538 - sltY MCAODC_01685 0.19 -1.7 326,538 - sltY MCAODC_01685 0.19 +0.3 326,620 + sltY MCAODC_01685 0.23 -0.3 326,620 + sltY MCAODC_01685 0.23 +1.0 326,650 + sltY MCAODC_01685 0.25 -0.1 326,651 - sltY MCAODC_01685 0.25 +1.3 326,651 - sltY MCAODC_01685 0.25 +0.9 326,671 + sltY MCAODC_01685 0.26 -0.9 326,671 + sltY MCAODC_01685 0.26 -1.5 326,672 - sltY MCAODC_01685 0.26 -0.8 326,736 - sltY MCAODC_01685 0.29 -1.8 326,736 - sltY MCAODC_01685 0.29 +0.6 326,852 - sltY MCAODC_01685 0.35 -0.4 326,938 + sltY MCAODC_01685 0.40 -0.9 326,938 + sltY MCAODC_01685 0.40 +0.1 327,062 - sltY MCAODC_01685 0.46 +0.5 327,093 - sltY MCAODC_01685 0.48 -0.6 327,167 + sltY MCAODC_01685 0.51 -0.2 327,168 - sltY MCAODC_01685 0.51 +0.1 327,176 + sltY MCAODC_01685 0.52 -1.7 327,176 + sltY MCAODC_01685 0.52 -1.2 327,176 + sltY MCAODC_01685 0.52 +1.8 327,177 - sltY MCAODC_01685 0.52 +0.5 327,191 + sltY MCAODC_01685 0.53 -0.4 327,192 - sltY MCAODC_01685 0.53 +0.9 327,192 - sltY MCAODC_01685 0.53 +2.1 327,290 + sltY MCAODC_01685 0.58 +0.2 327,290 + sltY MCAODC_01685 0.58 -1.2 327,291 - sltY MCAODC_01685 0.58 -0.1 327,390 - sltY MCAODC_01685 0.63 +0.5 327,410 + sltY MCAODC_01685 0.64 -1.0 327,411 - sltY MCAODC_01685 0.64 +0.4 327,411 - sltY MCAODC_01685 0.64 +0.1 327,471 - sltY MCAODC_01685 0.67 +1.6 327,510 + sltY MCAODC_01685 0.69 +0.9 327,524 + sltY MCAODC_01685 0.70 +0.5 327,555 + sltY MCAODC_01685 0.71 -0.4 327,555 + sltY MCAODC_01685 0.71 +0.3 327,556 - sltY MCAODC_01685 0.71 -0.2 327,556 - sltY MCAODC_01685 0.71 -0.6 327,559 + sltY MCAODC_01685 0.72 -2.4 327,560 - sltY MCAODC_01685 0.72 -0.8 327,560 - sltY MCAODC_01685 0.72 +0.0 327,578 + sltY MCAODC_01685 0.73 -0.3 327,579 - sltY MCAODC_01685 0.73 -1.2 327,579 - sltY MCAODC_01685 0.73 +0.2 327,579 - sltY MCAODC_01685 0.73 +1.2 327,599 + sltY MCAODC_01685 0.74 -0.4 327,599 + sltY MCAODC_01685 0.74 -1.6 327,599 + sltY MCAODC_01685 0.74 +0.6 327,604 - sltY MCAODC_01685 0.74 +0.4 327,604 - sltY MCAODC_01685 0.74 +0.0 327,700 + sltY MCAODC_01685 0.79 -0.7 327,700 + sltY MCAODC_01685 0.79 +0.5 327,703 + sltY MCAODC_01685 0.79 -1.3 327,703 + sltY MCAODC_01685 0.79 -0.6 327,703 + sltY MCAODC_01685 0.79 +0.4 327,704 - sltY MCAODC_01685 0.79 -0.2 327,704 - sltY MCAODC_01685 0.79 +0.1 327,704 - sltY MCAODC_01685 0.79 +0.4 327,704 - sltY MCAODC_01685 0.79 +0.5 327,704 - sltY MCAODC_01685 0.79 -0.0 327,706 + sltY MCAODC_01685 0.79 -0.3 327,706 + sltY MCAODC_01685 0.79 -0.2 327,706 + sltY MCAODC_01685 0.79 +0.3 327,706 + sltY MCAODC_01685 0.79 -0.0 327,706 + sltY MCAODC_01685 0.79 -0.1 327,706 + sltY MCAODC_01685 0.79 +1.4 327,706 + sltY MCAODC_01685 0.79 +0.1 327,707 - sltY MCAODC_01685 0.79 +0.3 327,707 - sltY MCAODC_01685 0.79 -1.8 327,707 - sltY MCAODC_01685 0.79 +0.3 327,707 - sltY MCAODC_01685 0.79 -1.4 327,707 - sltY MCAODC_01685 0.79 +0.4 327,707 - sltY MCAODC_01685 0.79 +0.9 327,707 - sltY MCAODC_01685 0.79 +0.4 327,707 - sltY MCAODC_01685 0.79 -0.4 327,710 + sltY MCAODC_01685 0.79 -1.2 327,710 + sltY MCAODC_01685 0.79 -0.1 327,710 + sltY MCAODC_01685 0.79 -3.0 327,710 + sltY MCAODC_01685 0.79 +0.1 327,710 + sltY MCAODC_01685 0.79 -0.5 327,710 + sltY MCAODC_01685 0.79 +0.6 327,710 + sltY MCAODC_01685 0.79 +0.8 327,711 - sltY MCAODC_01685 0.79 +0.4 327,851 + sltY MCAODC_01685 0.87 +1.3 327,852 - sltY MCAODC_01685 0.87 -1.2 327,917 - +0.8 328,089 - +1.2 328,122 + +0.5 328,128 + +1.2 328,129 - +0.1 328,132 + +2.1 328,132 + -2.2 328,132 + -1.7 328,133 - -0.4 328,133 - +0.1 328,133 - -0.0 328,133 - +1.1 328,161 - +0.1 328,166 + +0.2 328,166 + -0.7 328,166 + -0.0 328,167 - +0.8 328,167 - -0.5 328,167 - -1.0 328,190 - -1.6 328,219 + +0.4 328,303 + +0.6 328,304 - +1.4 328,335 + -0.3 328,337 + -0.4 328,337 + +0.9 328,338 - -1.4 328,338 - -1.4 328,338 - +0.4 328,379 + +0.3 328,451 + -0.7 328,472 + -1.7 328,472 + -1.1 328,472 + +0.2 328,537 - ettA MCAODC_01690 0.13 -0.9 328,577 - ettA MCAODC_01690 0.15 +1.2 328,577 - ettA MCAODC_01690 0.15 +0.1 328,641 + ettA MCAODC_01690 0.19 -0.1 328,642 - ettA MCAODC_01690 0.19 +0.2 328,642 - ettA MCAODC_01690 0.19 +2.9 328,734 - ettA MCAODC_01690 0.25 -1.4 328,744 + ettA MCAODC_01690 0.25 +2.0 328,744 + ettA MCAODC_01690 0.25 +2.4 328,744 + ettA MCAODC_01690 0.25 -0.5 328,744 + ettA MCAODC_01690 0.25 +0.6 328,771 + ettA MCAODC_01690 0.27 +0.2 328,771 + ettA MCAODC_01690 0.27 -2.4 328,771 + ettA MCAODC_01690 0.27 +0.4 328,771 + ettA MCAODC_01690 0.27 -1.2 328,965 - ettA MCAODC_01690 0.39 +0.0 328,977 + ettA MCAODC_01690 0.39 +0.2 328,977 + ettA MCAODC_01690 0.39 +0.1 328,978 - ettA MCAODC_01690 0.39 +0.4 328,978 - ettA MCAODC_01690 0.39 -2.3 329,045 + ettA MCAODC_01690 0.43 -1.1 329,046 - ettA MCAODC_01690 0.44 -1.7 329,046 - ettA MCAODC_01690 0.44 -0.4 329,049 + ettA MCAODC_01690 0.44 -1.2 329,050 - ettA MCAODC_01690 0.44 +0.0 329,050 - ettA MCAODC_01690 0.44 -0.2 329,050 - ettA MCAODC_01690 0.44 -0.6 329,050 - ettA MCAODC_01690 0.44 -0.5
Or see this region's nucleotide sequence