Experiment: WM_RB68
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MCAODC_00880 and ecpD are separated by 86 nucleotides ecpD and fimD are separated by 41 nucleotides fimD and fimA are separated by 13 nucleotides fimA and fimA are separated by 14 nucleotides
MCAODC_00880: MCAODC_00880 - fimbrial protein, at 155,919 to 156,515
_00880
MCAODC_00885: ecpD - fimbrial chaperone, at 156,602 to 157,327
ecpD
MCAODC_00890: fimD - outer membrane usher protein, at 157,369 to 159,969
fimD
MCAODC_00895: fimA - Pilin (type 1 fimbrial protein), at 159,983 to 160,531
fimA
MCAODC_00900: fimA - fimbrial protein, at 160,546 to 161,151
fimA
Position (kb) 157
158
159
160 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 156.425 kb on + strand, within MCAODC_00880 at 156.435 kb on + strand, within MCAODC_00880 at 156.435 kb on + strand, within MCAODC_00880 at 156.436 kb on - strand, within MCAODC_00880 at 156.478 kb on + strand at 156.486 kb on - strand at 156.507 kb on + strand at 156.507 kb on + strand at 156.507 kb on + strand at 156.507 kb on + strand at 156.508 kb on - strand at 156.513 kb on + strand at 156.601 kb on + strand at 156.683 kb on - strand, within ecpD at 156.701 kb on - strand, within ecpD at 156.708 kb on - strand, within ecpD at 156.893 kb on + strand, within ecpD at 156.893 kb on + strand, within ecpD at 156.893 kb on + strand, within ecpD at 156.893 kb on + strand, within ecpD at 156.893 kb on + strand, within ecpD at 156.893 kb on + strand, within ecpD at 156.893 kb on + strand, within ecpD at 156.893 kb on + strand, within ecpD at 156.893 kb on + strand, within ecpD at 156.894 kb on - strand, within ecpD at 156.894 kb on - strand, within ecpD at 156.935 kb on + strand, within ecpD at 157.000 kb on - strand, within ecpD at 157.110 kb on + strand, within ecpD at 157.111 kb on - strand, within ecpD at 157.121 kb on - strand, within ecpD at 157.121 kb on - strand, within ecpD at 157.133 kb on + strand, within ecpD at 157.134 kb on - strand, within ecpD at 157.136 kb on + strand, within ecpD at 157.136 kb on + strand, within ecpD at 157.136 kb on + strand, within ecpD at 157.136 kb on + strand, within ecpD at 157.136 kb on + strand, within ecpD at 157.136 kb on + strand, within ecpD at 157.136 kb on + strand, within ecpD at 157.137 kb on - strand, within ecpD at 157.137 kb on - strand, within ecpD at 157.137 kb on - strand, within ecpD at 157.137 kb on - strand, within ecpD at 157.137 kb on - strand, within ecpD at 157.147 kb on + strand, within ecpD at 157.181 kb on + strand, within ecpD at 157.182 kb on - strand, within ecpD at 157.277 kb on - strand at 157.347 kb on + strand at 157.380 kb on + strand at 157.380 kb on + strand at 157.381 kb on - strand at 157.441 kb on + strand at 157.443 kb on + strand at 157.524 kb on + strand at 157.531 kb on + strand at 157.564 kb on + strand at 157.564 kb on + strand at 157.565 kb on - strand at 157.566 kb on + strand at 157.567 kb on - strand at 157.577 kb on + strand at 157.577 kb on + strand at 157.686 kb on + strand, within fimD at 157.687 kb on - strand, within fimD at 157.687 kb on - strand, within fimD at 157.713 kb on - strand, within fimD at 157.763 kb on - strand, within fimD at 157.828 kb on + strand, within fimD at 157.828 kb on + strand, within fimD at 157.828 kb on + strand, within fimD at 157.829 kb on - strand, within fimD at 157.829 kb on - strand, within fimD at 157.843 kb on + strand, within fimD at 157.843 kb on + strand, within fimD at 157.852 kb on + strand, within fimD at 157.853 kb on - strand, within fimD at 157.869 kb on - strand, within fimD at 157.903 kb on + strand, within fimD at 157.903 kb on + strand, within fimD at 157.903 kb on + strand, within fimD at 157.904 kb on - strand, within fimD at 157.904 kb on - strand, within fimD at 157.904 kb on - strand, within fimD at 157.905 kb on + strand, within fimD at 157.905 kb on + strand, within fimD at 157.906 kb on - strand, within fimD at 157.906 kb on - strand, within fimD at 157.906 kb on - strand, within fimD at 157.944 kb on + strand, within fimD at 157.944 kb on + strand, within fimD at 157.944 kb on + strand, within fimD at 157.945 kb on - strand, within fimD at 157.958 kb on - strand, within fimD at 157.978 kb on - strand, within fimD at 157.978 kb on - strand, within fimD at 157.985 kb on + strand, within fimD at 157.986 kb on - strand, within fimD at 157.986 kb on - strand, within fimD at 158.013 kb on + strand, within fimD at 158.017 kb on + strand, within fimD at 158.017 kb on + strand, within fimD at 158.017 kb on + strand, within fimD at 158.017 kb on + strand, within fimD at 158.017 kb on + strand, within fimD at 158.017 kb on + strand, within fimD at 158.017 kb on + strand, within fimD at 158.017 kb on + strand, within fimD at 158.018 kb on - strand, within fimD at 158.018 kb on - strand, within fimD at 158.018 kb on - strand, within fimD at 158.020 kb on - strand, within fimD at 158.066 kb on - strand, within fimD at 158.069 kb on + strand, within fimD at 158.070 kb on - strand, within fimD at 158.070 kb on - strand, within fimD at 158.102 kb on + strand, within fimD at 158.103 kb on - strand, within fimD at 158.107 kb on - strand, within fimD at 158.119 kb on + strand, within fimD at 158.119 kb on + strand, within fimD at 158.120 kb on - strand, within fimD at 158.121 kb on + strand, within fimD at 158.170 kb on + strand, within fimD at 158.184 kb on + strand, within fimD at 158.184 kb on + strand, within fimD at 158.185 kb on - strand, within fimD at 158.185 kb on - strand, within fimD at 158.210 kb on - strand, within fimD at 158.210 kb on - strand, within fimD at 158.275 kb on - strand, within fimD at 158.314 kb on - strand, within fimD at 158.316 kb on - strand, within fimD at 158.316 kb on - strand, within fimD at 158.395 kb on - strand, within fimD at 158.418 kb on - strand, within fimD at 158.499 kb on + strand, within fimD at 158.515 kb on + strand, within fimD at 158.515 kb on + strand, within fimD at 158.515 kb on + strand, within fimD at 158.515 kb on + strand, within fimD at 158.515 kb on + strand, within fimD at 158.516 kb on - strand, within fimD at 158.516 kb on - strand, within fimD at 158.516 kb on - strand, within fimD at 158.516 kb on - strand, within fimD at 158.516 kb on - strand, within fimD at 158.518 kb on + strand, within fimD at 158.518 kb on + strand, within fimD at 158.518 kb on + strand, within fimD at 158.519 kb on - strand, within fimD at 158.519 kb on - strand, within fimD at 158.519 kb on - strand, within fimD at 158.521 kb on + strand, within fimD at 158.521 kb on + strand, within fimD at 158.521 kb on + strand, within fimD at 158.548 kb on + strand, within fimD at 158.551 kb on - strand, within fimD at 158.574 kb on + strand, within fimD at 158.574 kb on + strand, within fimD at 158.574 kb on + strand, within fimD at 158.574 kb on + strand, within fimD at 158.574 kb on + strand, within fimD at 158.575 kb on - strand, within fimD at 158.575 kb on - strand, within fimD at 158.575 kb on - strand, within fimD at 158.575 kb on - strand, within fimD at 158.575 kb on - strand, within fimD at 158.578 kb on + strand, within fimD at 158.579 kb on - strand, within fimD at 158.579 kb on - strand, within fimD at 158.579 kb on - strand, within fimD at 158.594 kb on + strand, within fimD at 158.594 kb on + strand, within fimD at 158.595 kb on - strand, within fimD at 158.595 kb on - strand, within fimD at 158.595 kb on - strand, within fimD at 158.595 kb on - strand, within fimD at 158.595 kb on - strand, within fimD at 158.670 kb on + strand, within fimD at 158.671 kb on - strand, within fimD at 158.671 kb on - strand, within fimD at 158.671 kb on - strand, within fimD at 158.739 kb on + strand, within fimD at 158.740 kb on - strand, within fimD at 158.740 kb on - strand, within fimD at 158.773 kb on + strand, within fimD at 158.774 kb on - strand, within fimD at 158.857 kb on + strand, within fimD at 158.857 kb on + strand, within fimD at 158.857 kb on + strand, within fimD at 158.857 kb on + strand, within fimD at 158.865 kb on + strand, within fimD at 158.880 kb on + strand, within fimD at 158.938 kb on - strand, within fimD at 158.956 kb on + strand, within fimD at 158.956 kb on + strand, within fimD at 158.957 kb on - strand, within fimD at 158.957 kb on - strand, within fimD at 158.976 kb on + strand, within fimD at 158.976 kb on + strand, within fimD at 158.977 kb on - strand, within fimD at 158.989 kb on + strand, within fimD at 158.990 kb on - strand, within fimD at 158.991 kb on + strand, within fimD at 159.001 kb on + strand, within fimD at 159.041 kb on + strand, within fimD at 159.042 kb on - strand, within fimD at 159.048 kb on + strand, within fimD at 159.048 kb on + strand, within fimD at 159.049 kb on - strand, within fimD at 159.086 kb on - strand, within fimD at 159.086 kb on - strand, within fimD at 159.086 kb on - strand, within fimD at 159.086 kb on - strand, within fimD at 159.101 kb on + strand, within fimD at 159.101 kb on + strand, within fimD at 159.101 kb on + strand, within fimD at 159.101 kb on + strand, within fimD at 159.102 kb on - strand, within fimD at 159.102 kb on - strand, within fimD at 159.105 kb on + strand, within fimD at 159.106 kb on - strand, within fimD at 159.115 kb on - strand, within fimD at 159.119 kb on + strand, within fimD at 159.120 kb on - strand, within fimD at 159.133 kb on - strand, within fimD at 159.133 kb on - strand, within fimD at 159.159 kb on + strand, within fimD at 159.172 kb on - strand, within fimD at 159.205 kb on - strand, within fimD at 159.216 kb on + strand, within fimD at 159.241 kb on + strand, within fimD at 159.241 kb on + strand, within fimD at 159.241 kb on + strand, within fimD at 159.242 kb on - strand, within fimD at 159.242 kb on - strand, within fimD at 159.242 kb on - strand, within fimD at 159.261 kb on + strand, within fimD at 159.304 kb on + strand, within fimD at 159.305 kb on - strand, within fimD at 159.326 kb on + strand, within fimD at 159.377 kb on - strand, within fimD at 159.377 kb on - strand, within fimD at 159.404 kb on + strand, within fimD at 159.405 kb on - strand, within fimD at 159.405 kb on - strand, within fimD at 159.405 kb on - strand, within fimD at 159.408 kb on - strand, within fimD at 159.408 kb on - strand, within fimD at 159.422 kb on + strand, within fimD at 159.432 kb on + strand, within fimD at 159.432 kb on + strand, within fimD at 159.486 kb on + strand, within fimD at 159.510 kb on + strand, within fimD at 159.511 kb on - strand, within fimD at 159.511 kb on - strand, within fimD at 159.535 kb on + strand, within fimD at 159.625 kb on - strand, within fimD at 159.641 kb on + strand, within fimD at 159.641 kb on + strand, within fimD at 159.642 kb on - strand, within fimD at 159.648 kb on + strand, within fimD at 159.708 kb on + strand, within fimD at 159.712 kb on - strand at 159.833 kb on + strand at 159.847 kb on + strand at 159.873 kb on + strand at 159.873 kb on + strand at 159.873 kb on + strand at 159.874 kb on - strand at 159.874 kb on - strand at 159.874 kb on - strand at 159.874 kb on - strand at 159.883 kb on + strand at 159.929 kb on + strand at 159.929 kb on + strand at 159.929 kb on + strand at 159.932 kb on + strand at 159.932 kb on + strand at 159.932 kb on + strand at 159.932 kb on + strand at 159.932 kb on + strand at 159.932 kb on + strand at 159.933 kb on - strand at 159.933 kb on - strand at 159.933 kb on - strand at 159.936 kb on + strand at 159.937 kb on - strand at 159.945 kb on + strand at 159.945 kb on + strand at 159.967 kb on + strand at 159.967 kb on + strand at 159.968 kb on - strand at 159.993 kb on + strand at 159.996 kb on + strand at 159.996 kb on + strand at 159.997 kb on - strand at 159.997 kb on - strand at 159.997 kb on - strand at 159.997 kb on - strand at 159.997 kb on - strand at 159.999 kb on + strand at 159.999 kb on + strand at 160.000 kb on - strand at 160.015 kb on - strand at 160.055 kb on - strand, within fimA at 160.055 kb on - strand, within fimA at 160.055 kb on - strand, within fimA at 160.066 kb on + strand, within fimA at 160.099 kb on - strand, within fimA at 160.099 kb on - strand, within fimA at 160.102 kb on + strand, within fimA at 160.102 kb on + strand, within fimA at 160.102 kb on + strand, within fimA at 160.102 kb on + strand, within fimA at 160.102 kb on + strand, within fimA at 160.102 kb on + strand, within fimA at 160.102 kb on + strand, within fimA at 160.102 kb on + strand, within fimA at 160.103 kb on - strand, within fimA at 160.103 kb on - strand, within fimA at 160.103 kb on - strand, within fimA at 160.103 kb on - strand, within fimA at 160.103 kb on - strand, within fimA at 160.103 kb on - strand, within fimA at 160.103 kb on - strand, within fimA at 160.103 kb on - strand, within fimA at 160.103 kb on - strand, within fimA at 160.105 kb on - strand, within fimA at 160.148 kb on + strand, within fimA at 160.149 kb on - strand, within fimA at 160.220 kb on - strand, within fimA at 160.273 kb on + strand, within fimA at 160.273 kb on + strand, within fimA at 160.274 kb on - strand, within fimA at 160.274 kb on - strand, within fimA at 160.294 kb on + strand, within fimA at 160.299 kb on + strand, within fimA at 160.348 kb on + strand, within fimA at 160.354 kb on + strand, within fimA at 160.360 kb on + strand, within fimA at 160.360 kb on + strand, within fimA at 160.393 kb on + strand, within fimA at 160.394 kb on - strand, within fimA at 160.514 kb on - strand at 160.554 kb on - strand at 160.578 kb on + strand at 160.578 kb on + strand at 160.595 kb on + strand at 160.596 kb on - strand at 160.596 kb on - strand at 160.627 kb on - strand, within fimA at 160.627 kb on - strand, within fimA at 160.650 kb on - strand, within fimA at 160.656 kb on + strand, within fimA at 160.672 kb on - strand, within fimA at 160.672 kb on - strand, within fimA at 160.672 kb on - strand, within fimA at 160.698 kb on + strand, within fimA at 160.698 kb on + strand, within fimA at 160.698 kb on + strand, within fimA at 160.698 kb on + strand, within fimA at 160.699 kb on - strand, within fimA at 160.699 kb on - strand, within fimA at 160.702 kb on - strand, within fimA at 160.705 kb on - strand, within fimA at 160.705 kb on - strand, within fimA at 160.739 kb on - strand, within fimA at 160.740 kb on + strand, within fimA at 160.741 kb on - strand, within fimA at 160.791 kb on + strand, within fimA at 160.791 kb on + strand, within fimA at 160.829 kb on + strand, within fimA at 160.829 kb on + strand, within fimA at 160.830 kb on - strand, within fimA at 160.842 kb on + strand, within fimA at 160.843 kb on - strand, within fimA at 160.843 kb on - strand, within fimA at 160.843 kb on - strand, within fimA at 160.843 kb on - strand, within fimA at 160.843 kb on - strand, within fimA at 160.843 kb on - strand, within fimA at 160.843 kb on - strand, within fimA at 160.848 kb on + strand, within fimA at 160.848 kb on + strand, within fimA at 160.848 kb on + strand, within fimA at 160.848 kb on + strand, within fimA at 160.848 kb on + strand, within fimA at 160.848 kb on + strand, within fimA at 160.848 kb on + strand, within fimA at 160.849 kb on - strand, within fimA at 160.849 kb on - strand, within fimA at 160.849 kb on - strand, within fimA at 160.849 kb on - strand, within fimA at 160.849 kb on - strand, within fimA at 160.849 kb on - strand, within fimA at 160.849 kb on - strand, within fimA at 160.850 kb on + strand, within fimA at 160.851 kb on - strand, within fimA at 160.851 kb on - strand, within fimA at 160.909 kb on - strand, within fimA at 160.937 kb on + strand, within fimA at 160.938 kb on - strand, within fimA at 160.938 kb on - strand, within fimA at 160.944 kb on + strand, within fimA at 160.944 kb on + strand, within fimA at 160.945 kb on - strand, within fimA at 160.950 kb on + strand, within fimA at 160.951 kb on - strand, within fimA at 160.951 kb on - strand, within fimA
Per-strain Table
Position Strand Gene LocusTag Fraction WM_RB68 remove 156,425 + MCAODC_00880 0.85 -0.1 156,435 + MCAODC_00880 0.86 +0.4 156,435 + MCAODC_00880 0.86 +0.4 156,436 - MCAODC_00880 0.87 +0.4 156,478 + +0.0 156,486 - -0.7 156,507 + +0.5 156,507 + +0.2 156,507 + +0.9 156,507 + +0.0 156,508 - -0.3 156,513 + +1.6 156,601 + +1.2 156,683 - ecpD MCAODC_00885 0.11 -0.2 156,701 - ecpD MCAODC_00885 0.14 -3.3 156,708 - ecpD MCAODC_00885 0.15 -1.6 156,893 + ecpD MCAODC_00885 0.40 +0.2 156,893 + ecpD MCAODC_00885 0.40 -0.3 156,893 + ecpD MCAODC_00885 0.40 +0.3 156,893 + ecpD MCAODC_00885 0.40 +0.8 156,893 + ecpD MCAODC_00885 0.40 +0.7 156,893 + ecpD MCAODC_00885 0.40 -0.9 156,893 + ecpD MCAODC_00885 0.40 +0.0 156,893 + ecpD MCAODC_00885 0.40 +0.1 156,893 + ecpD MCAODC_00885 0.40 -0.9 156,894 - ecpD MCAODC_00885 0.40 +0.0 156,894 - ecpD MCAODC_00885 0.40 -0.1 156,935 + ecpD MCAODC_00885 0.46 -1.4 157,000 - ecpD MCAODC_00885 0.55 +0.1 157,110 + ecpD MCAODC_00885 0.70 -1.6 157,111 - ecpD MCAODC_00885 0.70 +0.3 157,121 - ecpD MCAODC_00885 0.71 +0.8 157,121 - ecpD MCAODC_00885 0.71 +0.4 157,133 + ecpD MCAODC_00885 0.73 +0.3 157,134 - ecpD MCAODC_00885 0.73 -0.1 157,136 + ecpD MCAODC_00885 0.74 -3.8 157,136 + ecpD MCAODC_00885 0.74 +0.8 157,136 + ecpD MCAODC_00885 0.74 -0.1 157,136 + ecpD MCAODC_00885 0.74 +0.3 157,136 + ecpD MCAODC_00885 0.74 +0.6 157,136 + ecpD MCAODC_00885 0.74 -0.6 157,136 + ecpD MCAODC_00885 0.74 +0.1 157,137 - ecpD MCAODC_00885 0.74 +0.1 157,137 - ecpD MCAODC_00885 0.74 -0.5 157,137 - ecpD MCAODC_00885 0.74 +0.0 157,137 - ecpD MCAODC_00885 0.74 +1.9 157,137 - ecpD MCAODC_00885 0.74 +1.5 157,147 + ecpD MCAODC_00885 0.75 -0.7 157,181 + ecpD MCAODC_00885 0.80 -0.2 157,182 - ecpD MCAODC_00885 0.80 +1.1 157,277 - -1.1 157,347 + +0.7 157,380 + -0.1 157,380 + +1.2 157,381 - -0.1 157,441 + +1.2 157,443 + +0.2 157,524 + -1.4 157,531 + -0.7 157,564 + -1.3 157,564 + +1.0 157,565 - -0.3 157,566 + +0.7 157,567 - +1.4 157,577 + +0.4 157,577 + -0.9 157,686 + fimD MCAODC_00890 0.12 +0.2 157,687 - fimD MCAODC_00890 0.12 +1.4 157,687 - fimD MCAODC_00890 0.12 +0.4 157,713 - fimD MCAODC_00890 0.13 +0.2 157,763 - fimD MCAODC_00890 0.15 +1.9 157,828 + fimD MCAODC_00890 0.18 +2.1 157,828 + fimD MCAODC_00890 0.18 +0.6 157,828 + fimD MCAODC_00890 0.18 -1.6 157,829 - fimD MCAODC_00890 0.18 -0.3 157,829 - fimD MCAODC_00890 0.18 +1.4 157,843 + fimD MCAODC_00890 0.18 -0.6 157,843 + fimD MCAODC_00890 0.18 -0.3 157,852 + fimD MCAODC_00890 0.19 +0.3 157,853 - fimD MCAODC_00890 0.19 -2.7 157,869 - fimD MCAODC_00890 0.19 -0.1 157,903 + fimD MCAODC_00890 0.21 -2.4 157,903 + fimD MCAODC_00890 0.21 +0.5 157,903 + fimD MCAODC_00890 0.21 -0.7 157,904 - fimD MCAODC_00890 0.21 +0.7 157,904 - fimD MCAODC_00890 0.21 -0.1 157,904 - fimD MCAODC_00890 0.21 -0.0 157,905 + fimD MCAODC_00890 0.21 -0.2 157,905 + fimD MCAODC_00890 0.21 -3.0 157,906 - fimD MCAODC_00890 0.21 +0.2 157,906 - fimD MCAODC_00890 0.21 -0.2 157,906 - fimD MCAODC_00890 0.21 +1.0 157,944 + fimD MCAODC_00890 0.22 -0.8 157,944 + fimD MCAODC_00890 0.22 +0.4 157,944 + fimD MCAODC_00890 0.22 -1.1 157,945 - fimD MCAODC_00890 0.22 -0.0 157,958 - fimD MCAODC_00890 0.23 +0.5 157,978 - fimD MCAODC_00890 0.23 -0.7 157,978 - fimD MCAODC_00890 0.23 +0.2 157,985 + fimD MCAODC_00890 0.24 +0.9 157,986 - fimD MCAODC_00890 0.24 -0.7 157,986 - fimD MCAODC_00890 0.24 -2.4 158,013 + fimD MCAODC_00890 0.25 -0.5 158,017 + fimD MCAODC_00890 0.25 +0.6 158,017 + fimD MCAODC_00890 0.25 -0.3 158,017 + fimD MCAODC_00890 0.25 +0.2 158,017 + fimD MCAODC_00890 0.25 +0.0 158,017 + fimD MCAODC_00890 0.25 +0.5 158,017 + fimD MCAODC_00890 0.25 -0.6 158,017 + fimD MCAODC_00890 0.25 +0.0 158,017 + fimD MCAODC_00890 0.25 +0.6 158,018 - fimD MCAODC_00890 0.25 -0.4 158,018 - fimD MCAODC_00890 0.25 +1.5 158,018 - fimD MCAODC_00890 0.25 -0.0 158,020 - fimD MCAODC_00890 0.25 +0.3 158,066 - fimD MCAODC_00890 0.27 +0.9 158,069 + fimD MCAODC_00890 0.27 -1.6 158,070 - fimD MCAODC_00890 0.27 +0.4 158,070 - fimD MCAODC_00890 0.27 +1.8 158,102 + fimD MCAODC_00890 0.28 +0.4 158,103 - fimD MCAODC_00890 0.28 -0.3 158,107 - fimD MCAODC_00890 0.28 +0.4 158,119 + fimD MCAODC_00890 0.29 +0.6 158,119 + fimD MCAODC_00890 0.29 -1.3 158,120 - 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fimA MCAODC_00900 0.66 -0.4 160,950 + fimA MCAODC_00900 0.67 -0.8 160,951 - fimA MCAODC_00900 0.67 +0.5 160,951 - fimA MCAODC_00900 0.67 -0.5
Or see this region's nucleotide sequence