Strain Fitness in Escherichia coli ECRC101 around MCAODC_26460

Experiment: WM_TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntybeY and corC are separated by 89 nucleotidescorC and lnt are separated by 24 nucleotideslnt and gltI are separated by 396 nucleotides MCAODC_26450: ybeY - rRNA maturation RNase YbeY, at 2,008,291 to 2,008,758 ybeY MCAODC_26455: corC - CNNM family magnesium/cobalt transport protein CorC, at 2,008,848 to 2,009,726 corC MCAODC_26460: lnt - apolipoprotein N-acyltransferase, at 2,009,751 to 2,011,289 lnt MCAODC_26465: gltI - glutamate/aspartate ABC transporter substrate-binding protein GltI, at 2,011,686 to 2,012,594 gltI Position (kb) 2009 2010 2011 2012Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2008.820 kb on + strandat 2008.824 kb on + strandat 2008.824 kb on + strandat 2008.824 kb on + strandat 2008.824 kb on + strandat 2008.824 kb on + strandat 2008.871 kb on + strandat 2009.006 kb on + strand, within corCat 2009.263 kb on + strand, within corCat 2009.263 kb on + strand, within corCat 2009.291 kb on + strand, within corCat 2009.666 kb on + strandat 2011.298 kb on + strandat 2011.299 kb on - strandat 2011.311 kb on + strandat 2011.321 kb on - strandat 2011.321 kb on - strandat 2011.371 kb on + strandat 2011.372 kb on - strandat 2011.398 kb on + strandat 2011.398 kb on + strandat 2011.398 kb on + strandat 2011.399 kb on - strandat 2011.412 kb on - strandat 2011.426 kb on + strandat 2011.672 kb on + strandat 2011.673 kb on - strandat 2011.693 kb on + strandat 2011.697 kb on + strandat 2011.697 kb on + strandat 2011.779 kb on - strand, within gltIat 2011.779 kb on - strand, within gltIat 2011.838 kb on - strand, within gltIat 2011.848 kb on + strand, within gltIat 2012.024 kb on + strand, within gltIat 2012.025 kb on - strand, within gltIat 2012.171 kb on + strand, within gltI

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Per-strain Table

Position Strand Gene LocusTag Fraction WM_TP9
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2,008,820 + -1.8
2,008,824 + -1.4
2,008,824 + -0.5
2,008,824 + -0.7
2,008,824 + -0.5
2,008,824 + -0.1
2,008,871 + -1.5
2,009,006 + corC MCAODC_26455 0.18 +0.2
2,009,263 + corC MCAODC_26455 0.47 +0.8
2,009,263 + corC MCAODC_26455 0.47 +0.2
2,009,291 + corC MCAODC_26455 0.50 +0.2
2,009,666 + -0.1
2,011,298 + +3.2
2,011,299 - -0.9
2,011,311 + -1.5
2,011,321 - +0.6
2,011,321 - +0.7
2,011,371 + -0.1
2,011,372 - -0.8
2,011,398 + +0.2
2,011,398 + -0.9
2,011,398 + -0.3
2,011,399 - +0.8
2,011,412 - +0.6
2,011,426 + +0.9
2,011,672 + +1.6
2,011,673 - -0.9
2,011,693 + +0.2
2,011,697 + +0.4
2,011,697 + +0.6
2,011,779 - gltI MCAODC_26465 0.10 +0.3
2,011,779 - gltI MCAODC_26465 0.10 +0.1
2,011,838 - gltI MCAODC_26465 0.17 -1.1
2,011,848 + gltI MCAODC_26465 0.18 -0.6
2,012,024 + gltI MCAODC_26465 0.37 +0.1
2,012,025 - gltI MCAODC_26465 0.37 -0.7
2,012,171 + gltI MCAODC_26465 0.53 +1.1

Or see this region's nucleotide sequence